Wall clock time and date at job start Tue Mar 31 2020 07:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46555 * 2 1 4 4 C 1.50692 * 109.47221 * 240.00028 * 2 1 3 5 5 H 1.08004 * 120.00316 * 241.33903 * 4 2 1 6 6 C 1.37881 * 120.00005 * 61.34729 * 4 2 1 7 7 N 1.31512 * 119.99943 * 193.97436 * 6 4 2 8 8 Si 1.86797 * 120.00028 * 13.97347 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.55270 * 8 6 4 10 10 H 1.48499 * 109.47043 * 204.55145 * 8 6 4 11 11 H 1.48495 * 109.46971 * 324.54917 * 8 6 4 12 12 C 1.53000 * 109.47050 * 119.99544 * 2 1 3 13 13 N 1.46500 * 109.47390 * 300.00662 * 12 2 1 14 14 C 1.34782 * 119.99744 * 180.02562 * 13 12 2 15 15 O 1.21575 * 119.99716 * 359.97438 * 14 13 12 16 16 C 1.47632 * 119.99651 * 179.97438 * 14 13 12 17 17 C 1.40357 * 119.92868 * 0.02562 * 16 14 13 18 18 C 1.36160 * 120.65912 * 180.02562 * 17 16 14 19 19 C 1.39560 * 120.18832 * 359.95519 * 18 17 16 20 20 N 1.36767 * 133.50705 * 180.02562 * 19 18 17 21 21 H 0.96998 * 125.35945 * 0.03188 * 20 19 18 22 22 N 1.39826 * 109.28524 * 179.78816 * 20 19 18 23 23 C 1.30509 * 110.09622 * 0.37196 * 22 20 19 24 24 O 1.35894 * 126.20665 * 179.90161 * 23 22 20 25 25 C 1.40980 * 119.72952 * 0.02562 * 19 18 17 26 26 C 1.38990 * 119.92523 * 179.97438 * 16 14 13 27 27 H 1.08998 * 109.47423 * 309.36407 * 1 2 3 28 28 H 1.09003 * 109.47290 * 69.37174 * 1 2 3 29 29 H 1.09006 * 109.46698 * 189.36741 * 1 2 3 30 30 H 1.09004 * 109.46581 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47337 * 300.00034 * 3 2 1 32 32 H 1.09002 * 109.47132 * 59.99899 * 3 2 1 33 33 H 0.97005 * 120.00415 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46862 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.46790 * 60.00734 * 12 2 1 36 36 H 0.96997 * 120.00141 * 359.97438 * 13 12 2 37 37 H 1.08000 * 119.66914 * 0.02562 * 17 16 14 38 38 H 1.08005 * 119.90469 * 179.97438 * 18 17 16 39 39 H 0.96705 * 114.00064 * 269.69267 * 24 23 22 40 40 H 1.07997 * 120.29008 * 0.02730 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6353 -1.6009 -1.1315 6 6 1.7223 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5459 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5865 -3.9287 11 1 0.1417 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6696 15 8 2.5766 -1.4792 3.7811 16 6 1.3858 0.2055 4.8750 17 6 0.5785 1.3461 4.7444 18 6 0.1172 2.0001 5.8460 19 6 0.4431 1.5404 7.1228 20 7 0.1391 1.9713 8.3847 21 1 -0.4077 2.7436 8.5976 22 7 0.7358 1.1199 9.3197 23 6 1.4054 0.1812 8.7082 24 8 2.1113 -0.8174 9.3008 25 6 1.2529 0.3956 7.2681 26 6 1.7225 -0.2707 6.1366 27 1 -0.3634 0.6518 0.7945 28 1 -0.3634 0.3621 -0.9618 29 1 -0.3633 -1.0140 0.1673 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6974 -0.6300 -4.4268 34 1 3.1300 -0.7207 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9941 0.7582 2.3565 37 1 0.3205 1.7087 3.7603 38 1 -0.5030 2.8769 5.7314 39 1 3.0371 -0.5967 9.4718 40 1 2.3433 -1.1484 6.2398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597763666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:05 Heat of formation + Delta-G solvation = 28.300104 kcal Electronic energy + Delta-G solvation = -24040.137258 eV Core-core repulsion = 20436.441998 eV Total energy + Delta-G solvation = -3603.695260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75342 -39.64861 -37.89670 -37.09112 -36.48125 -33.43027 -32.20054 -31.60581 -30.33873 -29.70676 -26.45302 -26.16437 -24.99449 -23.37530 -23.22596 -22.14914 -20.40487 -19.29389 -18.67112 -17.93591 -17.62544 -16.39222 -16.18298 -15.78707 -15.74433 -15.13811 -14.93295 -14.56157 -14.35736 -14.16699 -13.71677 -13.27921 -13.15854 -12.93615 -12.72345 -12.62455 -12.24587 -12.08589 -12.01476 -11.54882 -11.31383 -10.77609 -10.48103 -10.46386 -10.35080 -10.19998 -10.09537 -9.68509 -9.16843 -9.15002 -8.71621 -8.62533 -8.48322 -8.27516 -6.16613 -4.14074 0.52547 0.75524 1.82752 2.10341 2.86061 3.21631 3.28177 3.28374 3.36766 3.55261 3.76383 4.13670 4.33331 4.39162 4.69885 4.78356 4.95148 5.02512 5.13929 5.26391 5.60472 5.73160 5.73939 5.94313 6.01339 6.03409 6.07332 6.31032 6.33711 6.46207 6.49103 6.60595 6.66455 6.74278 6.77281 6.93040 6.99422 7.12149 7.18874 7.40135 7.69672 7.87899 8.42107 8.53946 8.89054 9.47041 10.96497 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.032467 B = 0.003028 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.212348 B = 9244.737304 C = 9895.857900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.142 3.858 13 N -0.717 5.717 14 C 0.554 3.446 15 O -0.545 6.545 16 C -0.168 4.168 17 C -0.033 4.033 18 C -0.150 4.150 19 C 0.156 3.844 20 N -0.491 5.491 21 H 0.446 0.554 22 N -0.261 5.261 23 C 0.295 3.705 24 O -0.450 6.450 25 C -0.203 4.203 26 C 0.032 3.968 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.395 0.605 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.406 0.594 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 9.134 22.043 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.368 5.368 14 C 0.340 3.660 15 O -0.424 6.424 16 C -0.173 4.173 17 C -0.054 4.054 18 C -0.172 4.172 19 C 0.039 3.961 20 N -0.210 5.210 21 H 0.292 0.708 22 N -0.088 5.088 23 C 0.077 3.923 24 O -0.254 6.254 25 C -0.212 4.212 26 C 0.011 3.989 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.264 0.736 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.996 8.447 23.009 24.834 hybrid contribution -0.247 1.709 -0.915 1.954 sum -4.244 10.156 22.094 24.684 Atomic orbital electron populations 1.22307 0.97837 0.99917 0.99938 1.18726 0.92517 0.92256 0.93805 1.22371 1.01300 0.98310 0.98519 1.20716 1.34106 1.12364 0.87958 0.90482 1.24976 0.94673 0.97296 0.95787 1.69949 1.48114 1.35920 0.98744 0.87296 0.79329 0.85574 0.76002 1.21350 1.23410 1.17507 1.21555 0.98743 0.95905 0.81853 1.46228 1.52742 1.31777 1.06036 1.18034 0.80626 0.84106 0.83192 1.90768 1.38526 1.26280 1.86845 1.19844 1.04557 0.99011 0.93854 1.20920 0.93077 0.92722 0.98701 1.19715 1.05992 1.03229 0.88247 1.18868 0.95723 0.94006 0.87539 1.45487 1.47928 1.26863 1.00710 0.70792 1.76618 1.13340 1.03566 1.15250 1.20842 0.95587 0.88551 0.87311 1.84891 1.27328 1.32623 1.80541 1.19901 1.07972 1.00012 0.93291 1.20728 0.92988 0.96441 0.88740 0.96024 0.92481 0.93299 0.92697 0.94001 0.95263 0.92534 0.91759 0.91642 0.76941 0.84564 0.84679 0.73578 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.53 37.16 0.28 -2.52 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.88 7.52 37.16 0.28 -2.60 16 4 C -0.51 -13.53 8.62 -34.44 -0.30 -13.83 16 5 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 6 C 0.08 2.06 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 8 Si 0.89 20.62 22.79 -169.99 -3.87 16.74 16 9 H -0.29 -6.64 7.10 56.52 0.40 -6.24 16 10 H -0.31 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.25 -5.21 4.65 56.52 0.26 -4.95 16 12 C 0.14 2.76 4.49 -4.04 -0.02 2.74 16 13 N -0.72 -11.35 4.95 -61.31 -0.30 -11.65 16 14 C 0.55 8.94 7.76 -12.42 -0.10 8.84 16 15 O -0.55 -10.75 16.32 5.30 0.09 -10.66 16 16 C -0.17 -2.13 5.87 -104.99 -0.62 -2.75 16 17 C -0.03 -0.32 9.46 -39.53 -0.37 -0.70 16 18 C -0.15 -1.25 10.00 -39.84 -0.40 -1.65 16 19 C 0.16 1.50 7.32 -84.13 -0.62 0.88 16 20 N -0.49 -4.11 7.34 32.40 0.24 -3.87 16 21 H 0.45 2.18 8.96 -182.81 -1.64 0.54 16 22 N -0.26 -2.76 12.56 31.81 0.40 -2.36 16 23 C 0.30 3.13 8.73 -14.83 -0.13 3.00 16 24 O -0.45 -3.90 13.66 -19.41 -0.27 -4.17 16 25 C -0.20 -2.27 6.36 -105.13 -0.67 -2.94 16 26 C 0.03 0.39 9.64 -38.85 -0.37 0.02 16 27 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 28 H 0.06 1.20 4.30 -51.93 -0.22 0.97 16 29 H 0.05 0.96 8.12 -51.93 -0.42 0.53 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 32 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.39 5.27 4.26 -40.82 -0.17 5.10 16 37 H 0.14 1.10 6.36 -52.49 -0.33 0.76 16 38 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.41 1.33 9.06 45.56 0.41 1.74 16 40 H 0.15 1.78 7.63 -52.49 -0.40 1.38 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -33.99 323.29 -6.28 -40.28 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.01 Total: 5.39 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.20 Total: -9.02 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 1.11 Total: -43.44 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.18 Total: -14.83 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -3.87 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.99 -6.28 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.576 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds