Wall clock time and date at job start Tue Mar 31 2020 07:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46555 * 2 1 4 4 C 1.50692 * 109.47221 * 240.00028 * 2 1 3 5 5 H 1.08004 * 120.00316 * 241.33903 * 4 2 1 6 6 C 1.37881 * 120.00005 * 61.34729 * 4 2 1 7 7 N 1.31512 * 119.99943 * 193.97436 * 6 4 2 8 8 Si 1.86797 * 120.00028 * 13.97347 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.55270 * 8 6 4 10 10 H 1.48499 * 109.47043 * 204.55145 * 8 6 4 11 11 H 1.48495 * 109.46971 * 324.54917 * 8 6 4 12 12 C 1.53000 * 109.47050 * 119.99544 * 2 1 3 13 13 N 1.46500 * 109.47390 * 300.00662 * 12 2 1 14 14 C 1.34782 * 119.99744 * 180.02562 * 13 12 2 15 15 O 1.21575 * 119.99716 * 359.97438 * 14 13 12 16 16 C 1.47632 * 119.99651 * 179.97438 * 14 13 12 17 17 C 1.40357 * 119.92868 * 0.02562 * 16 14 13 18 18 C 1.36160 * 120.65912 * 180.02562 * 17 16 14 19 19 C 1.39560 * 120.18832 * 359.95519 * 18 17 16 20 20 N 1.36767 * 133.50705 * 180.02562 * 19 18 17 21 21 H 0.96998 * 125.35945 * 0.03188 * 20 19 18 22 22 N 1.39826 * 109.28524 * 179.78816 * 20 19 18 23 23 C 1.30509 * 110.09622 * 0.37196 * 22 20 19 24 24 O 1.35894 * 126.20665 * 179.90161 * 23 22 20 25 25 C 1.40980 * 119.72952 * 0.02562 * 19 18 17 26 26 C 1.38990 * 119.92523 * 179.97438 * 16 14 13 27 27 H 1.08998 * 109.47423 * 309.36407 * 1 2 3 28 28 H 1.09003 * 109.47290 * 69.37174 * 1 2 3 29 29 H 1.09006 * 109.46698 * 189.36741 * 1 2 3 30 30 H 1.09004 * 109.46581 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47337 * 300.00034 * 3 2 1 32 32 H 1.09002 * 109.47132 * 59.99899 * 3 2 1 33 33 H 0.97005 * 120.00415 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46862 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.46790 * 60.00734 * 12 2 1 36 36 H 0.96997 * 120.00141 * 359.97438 * 13 12 2 37 37 H 1.08000 * 119.66914 * 0.02562 * 17 16 14 38 38 H 1.08005 * 119.90469 * 179.97438 * 18 17 16 39 39 H 0.96705 * 114.00064 * 269.69267 * 24 23 22 40 40 H 1.07997 * 120.29008 * 0.02730 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6353 -1.6009 -1.1315 6 6 1.7223 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5459 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5865 -3.9287 11 1 0.1417 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6696 15 8 2.5766 -1.4792 3.7811 16 6 1.3858 0.2055 4.8750 17 6 0.5785 1.3461 4.7444 18 6 0.1172 2.0001 5.8460 19 6 0.4431 1.5404 7.1228 20 7 0.1391 1.9713 8.3847 21 1 -0.4077 2.7436 8.5976 22 7 0.7358 1.1199 9.3197 23 6 1.4054 0.1812 8.7082 24 8 2.1113 -0.8174 9.3008 25 6 1.2529 0.3956 7.2681 26 6 1.7225 -0.2707 6.1366 27 1 -0.3634 0.6518 0.7945 28 1 -0.3634 0.3621 -0.9618 29 1 -0.3633 -1.0140 0.1673 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6974 -0.6300 -4.4268 34 1 3.1300 -0.7207 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9941 0.7582 2.3565 37 1 0.3205 1.7087 3.7603 38 1 -0.5030 2.8769 5.7314 39 1 3.0371 -0.5967 9.4718 40 1 2.3433 -1.1484 6.2398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597763666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:04 Heat of formation + Delta-G solvation = -1.567978 kcal Electronic energy + Delta-G solvation = -24041.432435 eV Core-core repulsion = 20436.441998 eV Total energy + Delta-G solvation = -3604.990437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50770 -40.90576 -38.72372 -38.36674 -37.55866 -35.03588 -33.47012 -32.96515 -31.21597 -30.51890 -27.99150 -27.61963 -26.93163 -24.44420 -24.00616 -22.87098 -21.58415 -20.93875 -19.56055 -18.84050 -18.44819 -18.02000 -17.35929 -17.14190 -16.75875 -16.49087 -16.26971 -15.59937 -15.21458 -15.03252 -14.91587 -14.86284 -14.63167 -14.28603 -13.98757 -13.95041 -13.71471 -13.43547 -13.02702 -12.72878 -12.37927 -12.32828 -12.12119 -11.91909 -11.72804 -11.50455 -11.22836 -11.11354 -10.93994 -10.59082 -10.35504 -10.07886 -9.88057 -9.07314 -8.27391 -6.29466 -0.25917 -0.07649 1.12774 1.39387 1.41298 1.45684 1.54642 1.83374 2.23387 2.38119 2.65340 2.79638 3.08970 3.40598 3.66940 3.78584 4.02124 4.11361 4.18746 4.26124 4.36273 4.44597 4.55602 4.80271 4.86696 4.86896 4.90393 4.98127 5.04116 5.10159 5.16892 5.22837 5.27525 5.44299 5.54840 5.59827 5.75355 5.83893 6.16794 6.32965 6.38031 6.57971 6.64768 6.75874 7.29201 7.35612 8.89995 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.032467 B = 0.003028 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.212348 B = 9244.737304 C = 9895.857900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.519 4.519 5 H 0.025 0.975 6 C 0.014 3.986 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.318 1.318 11 H -0.198 1.198 12 C 0.157 3.843 13 N -0.704 5.704 14 C 0.554 3.446 15 O -0.592 6.592 16 C -0.182 4.182 17 C -0.032 4.032 18 C -0.131 4.131 19 C 0.159 3.841 20 N -0.475 5.475 21 H 0.462 0.538 22 N -0.277 5.277 23 C 0.290 3.710 24 O -0.460 6.460 25 C -0.222 4.222 26 C 0.024 3.976 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.264 0.736 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.412 0.588 37 H 0.163 0.837 38 H 0.178 0.822 39 H 0.427 0.573 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 13.190 24.340 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.557 4.557 5 H 0.044 0.956 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.209 1.209 10 H -0.247 1.247 11 H -0.121 1.121 12 C 0.033 3.967 13 N -0.356 5.356 14 C 0.343 3.657 15 O -0.474 6.474 16 C -0.187 4.187 17 C -0.053 4.053 18 C -0.153 4.153 19 C 0.041 3.959 20 N -0.196 5.196 21 H 0.312 0.688 22 N -0.104 5.104 23 C 0.072 3.928 24 O -0.267 6.267 25 C -0.231 4.231 26 C 0.003 3.997 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.251 0.749 37 H 0.180 0.820 38 H 0.195 0.805 39 H 0.289 0.711 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.405 12.549 25.376 29.025 hybrid contribution 0.576 0.319 -1.494 1.632 sum -5.829 12.868 23.883 27.748 Atomic orbital electron populations 1.22239 0.95891 1.00747 1.01099 1.18655 0.93915 0.93214 0.91550 1.22311 1.01057 0.96636 1.00507 1.21058 1.32905 1.11083 0.90702 0.95628 1.25911 0.95407 1.01837 0.95140 1.70124 1.50808 1.38444 0.99450 0.86324 0.79473 0.79630 0.77096 1.20880 1.24730 1.12098 1.21070 0.97473 0.95048 0.83140 1.45903 1.52890 1.32016 1.04761 1.18585 0.79573 0.83477 0.84040 1.90747 1.40645 1.28516 1.87490 1.19566 1.06635 1.00593 0.91897 1.21133 0.92218 0.91463 1.00524 1.20106 1.04845 1.03590 0.86713 1.19109 0.94973 0.93324 0.88503 1.45510 1.47290 1.26800 0.99990 0.68839 1.76592 1.13784 1.04012 1.16051 1.20966 0.95803 0.88704 0.87302 1.84836 1.28955 1.32620 1.80337 1.20010 1.08929 1.00993 0.93190 1.20633 0.93336 0.96409 0.89370 0.91081 0.93538 0.94190 0.93527 0.94579 0.90328 0.92723 0.93800 0.94106 0.74936 0.82003 0.80482 0.71148 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 7.53 71.98 0.54 -4.57 16 2 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 3 C -0.15 -5.22 7.52 71.98 0.54 -4.68 16 4 C -0.52 -28.31 8.62 25.60 0.22 -28.09 16 5 H 0.03 1.60 7.99 -2.91 -0.02 1.57 16 6 C 0.01 0.79 5.32 84.66 0.45 1.24 16 7 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 8 Si 0.95 41.48 22.79 68.60 1.56 43.04 16 9 H -0.28 -12.09 7.10 99.48 0.71 -11.39 16 10 H -0.32 -14.51 7.11 99.48 0.71 -13.80 16 11 H -0.20 -7.07 4.65 99.48 0.46 -6.61 16 12 C 0.16 6.11 4.49 86.38 0.39 6.50 16 13 N -0.70 -20.72 4.95 -466.16 -2.31 -23.03 16 14 C 0.55 17.43 7.76 86.72 0.67 18.11 16 15 O -0.59 -24.08 16.32 -3.95 -0.06 -24.15 16 16 C -0.18 -4.26 5.87 -20.10 -0.12 -4.38 16 17 C -0.03 -0.48 9.46 22.30 0.21 -0.27 16 18 C -0.13 -1.48 10.00 22.10 0.22 -1.26 16 19 C 0.16 2.48 7.32 39.36 0.29 2.77 16 20 N -0.48 -6.30 7.34 -51.42 -0.38 -6.68 16 21 H 0.46 2.64 8.96 -213.50 -1.91 0.72 16 22 N -0.28 -5.25 12.56 -166.89 -2.10 -7.35 16 23 C 0.29 5.75 8.73 87.01 0.76 6.51 16 24 O -0.46 -7.65 13.66 -92.36 -1.26 -8.91 16 25 C -0.22 -4.58 6.36 -20.19 -0.13 -4.71 16 26 C 0.02 0.57 9.64 22.74 0.22 0.79 16 27 H 0.07 1.85 7.13 -2.39 -0.02 1.83 16 28 H 0.05 1.77 4.30 -2.39 -0.01 1.76 16 29 H 0.04 1.49 8.12 -2.38 -0.02 1.47 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.32 2.25 -2.39 -0.01 1.32 16 32 H 0.08 1.99 6.86 -2.39 -0.02 1.97 16 33 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 34 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.41 9.00 4.26 -92.71 -0.39 8.60 16 37 H 0.16 1.55 6.36 -2.91 -0.02 1.53 16 38 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.43 2.49 9.06 -74.05 -0.67 1.82 16 40 H 0.13 3.35 7.63 -2.91 -0.02 3.33 16 Total: -1.00 -79.69 323.29 -2.09 -81.78 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -2.09 Total: 14.57 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.24 Total: -10.92 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -4.48 Total: -95.41 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.33 Total: -33.05 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.56 Total: 43.04 kcal Total: -79.69 -2.09 -81.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.216 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds