Wall clock time and date at job start Tue Mar 31 2020 08:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46628 * 2 1 4 4 C 1.50691 * 109.47315 * 120.00366 * 2 1 3 5 5 O 1.21277 * 120.00500 * 119.99682 * 4 2 1 6 6 N 1.34786 * 119.99890 * 300.00442 * 4 2 1 7 7 C 1.39470 * 119.99885 * 175.08528 * 6 4 2 8 8 C 1.38597 * 119.57656 * 185.18947 * 7 6 4 9 9 C 1.40811 * 118.79499 * 179.97438 * 8 7 6 10 10 C 1.41540 * 120.99624 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99889 * 329.38045 * 10 9 8 12 12 C 1.40034 * 119.99818 * 149.38092 * 10 9 8 13 13 N 1.30740 * 119.99786 * 167.79366 * 12 10 9 14 14 Si 1.86805 * 120.00070 * 347.79821 * 12 10 9 15 15 H 1.48498 * 109.46991 * 92.42054 * 14 12 10 16 16 H 1.48504 * 109.46990 * 212.41754 * 14 12 10 17 17 H 1.48495 * 109.47217 * 332.41680 * 14 12 10 18 18 C 1.41180 * 118.00419 * 359.97438 * 9 8 7 19 19 C 1.37585 * 119.02036 * 0.02562 * 18 9 8 20 20 N 1.32082 * 121.10540 * 359.74016 * 19 18 9 21 21 C 1.52997 * 109.46932 * 240.00443 * 2 1 3 22 22 H 1.09000 * 110.21934 * 299.29436 * 21 2 1 23 23 C 1.54485 * 110.24870 * 61.22667 * 21 2 1 24 24 C 1.54628 * 101.76233 * 93.58333 * 23 21 2 25 25 C 1.51276 * 104.19827 * 24.80040 * 24 23 21 26 26 O 1.21277 * 124.94490 * 163.72613 * 25 24 23 27 27 N 1.34623 * 110.15029 * 343.76656 * 25 24 23 28 28 H 1.08996 * 109.47151 * 299.99796 * 1 2 3 29 29 H 1.08998 * 109.47420 * 59.99731 * 1 2 3 30 30 H 1.09010 * 109.46783 * 179.97438 * 1 2 3 31 31 H 0.96992 * 119.99518 * 355.07832 * 6 4 2 32 32 H 1.07996 * 120.60430 * 359.95213 * 8 7 6 33 33 H 0.97005 * 120.00013 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.48697 * 179.97438 * 18 9 8 35 35 H 1.08000 * 119.45178 * 179.97438 * 19 18 9 36 36 H 1.09005 * 110.96959 * 211.70585 * 23 21 2 37 37 H 1.09000 * 110.96925 * 335.42807 * 23 21 2 38 38 H 1.08998 * 110.48287 * 143.47547 * 24 23 21 39 39 H 1.08997 * 110.48334 * 266.11792 * 24 23 21 40 40 H 0.96998 * 124.47619 * 179.53943 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.0849 -0.9640 3.5914 8 6 1.6539 -0.5418 4.8392 9 6 2.0450 -1.2752 5.9758 10 6 1.6322 -0.8855 7.2723 11 1 1.4616 0.1577 7.4939 12 6 1.4451 -1.8524 8.2678 13 7 1.2994 -1.4873 9.5147 14 14 1.4037 -3.6641 7.8141 15 1 2.7688 -4.2360 7.9354 16 1 0.4827 -4.3830 8.7307 17 1 0.9268 -3.8135 6.4158 18 6 2.8612 -2.4110 5.7833 19 6 3.2390 -2.7526 4.5052 20 7 2.8467 -2.0403 3.4644 21 6 2.0400 -0.7211 -1.2493 22 1 1.6937 -1.7547 -1.2554 23 6 1.5605 0.0109 -2.5224 24 6 2.7556 0.9467 -2.8170 25 6 3.9355 0.2572 -2.1681 26 8 5.0994 0.5084 -2.3981 27 7 3.5062 -0.6766 -1.2985 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.2095 0.5778 2.5448 32 1 1.0298 0.3340 4.9380 33 1 1.1694 -2.1571 10.2042 34 1 3.1850 -3.0024 6.6270 35 1 3.8636 -3.6198 4.3500 36 1 1.4041 -0.6918 -3.3409 37 1 0.6548 0.5843 -2.3249 38 1 2.9117 1.0391 -3.8918 39 1 2.5924 1.9266 -2.3686 40 1 4.0889 -1.2465 -0.7727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599686938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:50 Heat of formation + Delta-G solvation = -38.735751 kcal Electronic energy + Delta-G solvation = -24302.824765 eV Core-core repulsion = 20696.222613 eV Total energy + Delta-G solvation = -3606.602153 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93411 -39.66390 -38.23766 -36.73043 -34.61358 -33.85610 -33.03924 -31.41341 -31.31474 -29.01862 -26.96158 -26.06331 -24.96076 -22.51890 -22.01335 -20.84431 -20.56078 -19.53455 -18.23209 -17.67918 -17.00484 -16.28972 -15.94406 -15.67035 -15.53389 -14.75823 -14.37876 -14.33425 -14.07226 -13.93104 -13.62537 -13.47955 -13.20302 -13.09708 -12.89808 -12.81110 -12.27848 -12.10436 -11.86159 -11.56563 -11.50608 -11.27801 -11.11858 -10.87020 -10.74694 -10.01255 -9.94266 -9.80884 -9.61811 -9.41990 -9.18618 -8.32066 -7.96874 -7.33271 -7.08490 -4.79342 2.18421 2.50420 2.54471 3.01779 3.11644 3.13582 3.24936 3.26791 3.32191 3.86984 4.12094 4.20148 4.30146 4.51407 4.65436 4.69546 4.90038 4.94546 5.07094 5.27002 5.32632 5.33090 5.41834 5.53990 5.58831 5.71581 5.73232 5.90222 6.22515 6.25751 6.37464 6.46981 6.75966 6.96130 7.01284 7.04802 7.08186 7.51473 7.66226 7.90801 8.15709 8.20793 8.35138 8.52904 8.62275 9.34879 9.92912 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.031409 B = 0.003164 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.258384 B = 8848.410137 C = 9109.265091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 H 0.099 0.901 4 C 0.506 3.494 5 O -0.478 6.478 6 N -0.659 5.659 7 C 0.358 3.642 8 C -0.290 4.290 9 C 0.129 3.871 10 C -0.439 4.439 11 H 0.094 0.906 12 C 0.085 3.915 13 N -0.803 5.803 14 Si 0.918 3.082 15 H -0.268 1.268 16 H -0.291 1.291 17 H -0.245 1.245 18 C -0.299 4.299 19 C 0.137 3.863 20 N -0.553 5.553 21 C 0.151 3.849 22 H 0.097 0.903 23 C -0.131 4.131 24 C -0.158 4.158 25 C 0.513 3.487 26 O -0.541 6.541 27 N -0.715 5.715 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.408 0.592 32 H 0.109 0.891 33 H 0.288 0.712 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 3.373 -17.967 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 H 0.117 0.883 4 C 0.291 3.709 5 O -0.348 6.348 6 N -0.305 5.305 7 C 0.132 3.868 8 C -0.316 4.316 9 C 0.120 3.880 10 C -0.469 4.469 11 H 0.112 0.888 12 C -0.135 4.135 13 N -0.427 5.427 14 Si 0.745 3.255 15 H -0.194 1.194 16 H -0.219 1.219 17 H -0.168 1.168 18 C -0.323 4.323 19 C -0.017 4.017 20 N -0.273 5.273 21 C 0.044 3.956 22 H 0.115 0.885 23 C -0.169 4.169 24 C -0.198 4.198 25 C 0.299 3.701 26 O -0.419 6.419 27 N -0.371 5.371 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.513 2.585 -18.878 19.582 hybrid contribution -0.381 -0.237 1.457 1.524 sum -4.895 2.348 -17.422 18.248 Atomic orbital electron populations 1.21842 0.91947 1.03461 1.03121 1.21858 0.98117 1.01354 0.93575 0.88291 1.20513 0.81025 0.85319 0.84050 1.90753 1.33830 1.24547 1.85680 1.43478 1.56294 1.26046 1.04655 1.18105 0.93376 0.90912 0.84413 1.21218 1.12128 1.07570 0.90690 1.17684 0.87789 0.89583 0.92916 1.19478 1.38878 0.96826 0.91740 0.88805 1.26180 0.91014 1.02421 0.93904 1.69603 1.34012 1.37956 1.01152 0.86234 0.78511 0.80567 0.80202 1.19369 1.21868 1.16825 1.21945 1.08378 1.04461 0.97477 1.21836 0.95565 0.96347 0.87903 1.67310 1.18187 1.08332 1.33435 1.21396 0.80482 1.00774 0.92944 0.88489 1.22775 0.98432 0.98780 0.96922 1.22355 0.94008 1.00283 1.03135 1.21004 0.89806 0.79811 0.79438 1.90750 1.19855 1.66337 1.64924 1.46442 1.07970 1.39076 1.43578 0.91416 0.90892 0.91500 0.75692 0.87269 0.90112 0.87340 0.85305 0.89506 0.88513 0.88092 0.87872 0.73864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.87 37.16 0.33 -0.65 16 2 C -0.13 -1.17 2.50 -91.77 -0.23 -1.40 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.51 7.61 6.97 -10.99 -0.08 7.54 16 5 O -0.48 -9.05 12.98 5.56 0.07 -8.97 16 6 N -0.66 -10.50 5.25 -11.49 -0.06 -10.56 16 7 C 0.36 7.58 7.42 -154.70 -1.15 6.43 16 8 C -0.29 -6.42 9.73 -38.48 -0.37 -6.80 16 9 C 0.13 3.16 5.16 -106.55 -0.55 2.61 16 10 C -0.44 -11.36 9.67 -37.65 -0.36 -11.73 16 11 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 12 C 0.09 2.15 5.48 -17.34 -0.10 2.05 16 13 N -0.80 -20.57 13.92 55.55 0.77 -19.79 16 14 Si 0.92 20.22 24.42 -169.99 -4.15 16.07 16 15 H -0.27 -5.71 6.67 56.52 0.38 -5.33 16 16 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.24 -5.60 6.65 56.52 0.38 -5.22 16 18 C -0.30 -7.10 7.11 -38.70 -0.28 -7.37 16 19 C 0.14 3.11 11.15 -17.68 -0.20 2.91 16 20 N -0.55 -12.80 7.85 -12.52 -0.10 -12.90 16 21 C 0.15 1.36 2.55 -67.01 -0.17 1.19 16 22 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 23 C -0.13 -0.74 6.52 -25.10 -0.16 -0.91 16 24 C -0.16 -1.17 6.86 -26.74 -0.18 -1.36 16 25 C 0.51 6.46 8.44 -10.77 -0.09 6.37 16 26 O -0.54 -9.31 18.03 5.56 0.10 -9.21 16 27 N -0.71 -8.63 5.39 -52.71 -0.28 -8.92 16 28 H 0.07 0.44 7.68 -51.93 -0.40 0.04 16 29 H 0.07 0.29 6.17 -51.93 -0.32 -0.03 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.41 4.92 8.27 -40.82 -0.34 4.58 16 32 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 34 H 0.11 2.52 4.43 -52.48 -0.23 2.29 16 35 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.33 5.89 -51.93 -0.31 0.03 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.42 5.96 7.92 -40.82 -0.32 5.64 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -33.32 328.33 -7.20 -40.52 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.91 Total: 9.93 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.59 Total: -1.11 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.33 Total: -52.17 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.15 Total: 16.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.32 -7.20 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599686938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.780 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds