Wall clock time and date at job start Tue Mar 31 2020 08:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46628 * 2 1 4 4 C 1.50691 * 109.47315 * 120.00366 * 2 1 3 5 5 O 1.21277 * 120.00500 * 119.99682 * 4 2 1 6 6 N 1.34786 * 119.99890 * 300.00442 * 4 2 1 7 7 C 1.39470 * 119.99885 * 175.08528 * 6 4 2 8 8 C 1.38597 * 119.57656 * 185.18947 * 7 6 4 9 9 C 1.40811 * 118.79499 * 179.97438 * 8 7 6 10 10 C 1.41540 * 120.99624 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99889 * 329.38045 * 10 9 8 12 12 C 1.40034 * 119.99818 * 149.38092 * 10 9 8 13 13 N 1.30740 * 119.99786 * 167.79366 * 12 10 9 14 14 Si 1.86805 * 120.00070 * 347.79821 * 12 10 9 15 15 H 1.48498 * 109.46991 * 92.42054 * 14 12 10 16 16 H 1.48504 * 109.46990 * 212.41754 * 14 12 10 17 17 H 1.48495 * 109.47217 * 332.41680 * 14 12 10 18 18 C 1.41180 * 118.00419 * 359.97438 * 9 8 7 19 19 C 1.37585 * 119.02036 * 0.02562 * 18 9 8 20 20 N 1.32082 * 121.10540 * 359.74016 * 19 18 9 21 21 C 1.52997 * 109.46932 * 240.00443 * 2 1 3 22 22 H 1.09000 * 110.21934 * 299.29436 * 21 2 1 23 23 C 1.54485 * 110.24870 * 61.22667 * 21 2 1 24 24 C 1.54628 * 101.76233 * 93.58333 * 23 21 2 25 25 C 1.51276 * 104.19827 * 24.80040 * 24 23 21 26 26 O 1.21277 * 124.94490 * 163.72613 * 25 24 23 27 27 N 1.34623 * 110.15029 * 343.76656 * 25 24 23 28 28 H 1.08996 * 109.47151 * 299.99796 * 1 2 3 29 29 H 1.08998 * 109.47420 * 59.99731 * 1 2 3 30 30 H 1.09010 * 109.46783 * 179.97438 * 1 2 3 31 31 H 0.96992 * 119.99518 * 355.07832 * 6 4 2 32 32 H 1.07996 * 120.60430 * 359.95213 * 8 7 6 33 33 H 0.97005 * 120.00013 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.48697 * 179.97438 * 18 9 8 35 35 H 1.08000 * 119.45178 * 179.97438 * 19 18 9 36 36 H 1.09005 * 110.96959 * 211.70585 * 23 21 2 37 37 H 1.09000 * 110.96925 * 335.42807 * 23 21 2 38 38 H 1.08998 * 110.48287 * 143.47547 * 24 23 21 39 39 H 1.08997 * 110.48334 * 266.11792 * 24 23 21 40 40 H 0.96998 * 124.47619 * 179.53943 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.0849 -0.9640 3.5914 8 6 1.6539 -0.5418 4.8392 9 6 2.0450 -1.2752 5.9758 10 6 1.6322 -0.8855 7.2723 11 1 1.4616 0.1577 7.4939 12 6 1.4451 -1.8524 8.2678 13 7 1.2994 -1.4873 9.5147 14 14 1.4037 -3.6641 7.8141 15 1 2.7688 -4.2360 7.9354 16 1 0.4827 -4.3830 8.7307 17 1 0.9268 -3.8135 6.4158 18 6 2.8612 -2.4110 5.7833 19 6 3.2390 -2.7526 4.5052 20 7 2.8467 -2.0403 3.4644 21 6 2.0400 -0.7211 -1.2493 22 1 1.6937 -1.7547 -1.2554 23 6 1.5605 0.0109 -2.5224 24 6 2.7556 0.9467 -2.8170 25 6 3.9355 0.2572 -2.1681 26 8 5.0994 0.5084 -2.3981 27 7 3.5062 -0.6766 -1.2985 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.2095 0.5778 2.5448 32 1 1.0298 0.3340 4.9380 33 1 1.1694 -2.1571 10.2042 34 1 3.1850 -3.0024 6.6270 35 1 3.8636 -3.6198 4.3500 36 1 1.4041 -0.6918 -3.3409 37 1 0.6548 0.5843 -2.3249 38 1 2.9117 1.0391 -3.8918 39 1 2.5924 1.9266 -2.3686 40 1 4.0889 -1.2465 -0.7727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599686938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:49 Heat of formation + Delta-G solvation = -63.631017 kcal Electronic energy + Delta-G solvation = -24303.904305 eV Core-core repulsion = 20696.222613 eV Total energy + Delta-G solvation = -3607.681692 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92020 -40.99462 -39.73584 -37.77135 -36.21557 -35.48812 -33.99849 -33.19487 -32.05201 -30.62713 -27.94891 -27.64510 -25.84027 -23.91220 -23.64470 -21.95275 -21.38645 -20.72853 -19.89289 -18.62240 -18.21959 -17.87659 -17.37296 -16.77407 -16.65882 -16.16852 -15.99582 -15.85047 -15.31209 -14.93882 -14.85255 -14.65491 -14.43515 -14.36759 -14.10505 -13.69888 -13.47456 -13.05010 -13.01387 -12.73195 -12.71497 -12.55650 -12.41780 -12.14229 -11.78350 -11.71325 -11.44565 -11.21789 -10.91466 -10.90313 -10.19097 -10.12673 -9.67987 -8.99680 -8.97267 -6.75066 0.50365 0.72800 1.25892 1.38732 1.45691 1.57599 1.80748 2.04315 2.08041 2.46043 2.66367 3.33306 3.48172 3.55494 3.63990 3.78625 4.06087 4.14460 4.24339 4.32687 4.42878 4.48497 4.59672 4.65298 4.72039 4.76876 4.84174 4.93434 5.01460 5.15250 5.18810 5.22703 5.23504 5.41117 5.44434 5.70001 5.84024 6.03634 6.13711 6.18526 6.47388 6.49095 6.67887 7.20780 7.25383 7.66343 8.08952 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.031409 B = 0.003164 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.258384 B = 8848.410137 C = 9109.265091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.120 0.880 4 C 0.498 3.502 5 O -0.520 6.520 6 N -0.651 5.651 7 C 0.359 3.641 8 C -0.297 4.297 9 C 0.114 3.886 10 C -0.469 4.469 11 H 0.068 0.932 12 C 0.054 3.946 13 N -0.837 5.837 14 Si 0.968 3.032 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.259 1.259 18 C -0.312 4.312 19 C 0.133 3.867 20 N -0.568 5.568 21 C 0.143 3.857 22 H 0.090 0.910 23 C -0.114 4.114 24 C -0.147 4.147 25 C 0.500 3.500 26 O -0.601 6.601 27 N -0.723 5.723 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.427 0.573 32 H 0.128 0.872 33 H 0.298 0.702 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 3.830 -20.533 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.138 0.862 4 C 0.285 3.715 5 O -0.392 6.392 6 N -0.298 5.298 7 C 0.132 3.868 8 C -0.322 4.322 9 C 0.106 3.894 10 C -0.500 4.500 11 H 0.087 0.913 12 C -0.163 4.163 13 N -0.463 5.463 14 Si 0.792 3.208 15 H -0.181 1.181 16 H -0.203 1.203 17 H -0.183 1.183 18 C -0.336 4.336 19 C -0.021 4.021 20 N -0.287 5.287 21 C 0.038 3.962 22 H 0.108 0.892 23 C -0.151 4.151 24 C -0.187 4.187 25 C 0.288 3.712 26 O -0.483 6.483 27 N -0.375 5.375 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.265 0.735 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.172 0.828 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.495 3.083 -21.453 22.626 hybrid contribution 0.255 -0.352 2.127 2.171 sum -6.241 2.731 -19.326 20.492 Atomic orbital electron populations 1.21914 0.89193 1.03587 1.05393 1.21889 1.00051 1.01279 0.90094 0.86223 1.21695 0.79842 0.84951 0.84978 1.90740 1.35548 1.26634 1.86283 1.43554 1.56166 1.26370 1.03737 1.18386 0.92104 0.90389 0.85961 1.21434 1.12253 1.07906 0.90615 1.17879 0.87947 0.90461 0.93115 1.19468 1.41314 0.96033 0.93147 0.91339 1.26773 0.90464 1.05432 0.93667 1.69619 1.35368 1.39407 1.01894 0.85467 0.79228 0.76853 0.79207 1.18143 1.20280 1.18311 1.22036 1.08825 1.04573 0.98128 1.22267 0.95405 0.96974 0.87484 1.67462 1.18554 1.09027 1.33674 1.21676 0.78665 1.01199 0.94706 0.89189 1.22853 0.98669 0.98468 0.95090 1.22420 0.91827 1.00865 1.03596 1.22011 0.90406 0.79631 0.79103 1.90707 1.22668 1.68133 1.66764 1.46719 1.09398 1.38450 1.42902 0.90929 0.86925 0.92480 0.73455 0.85447 0.89129 0.87102 0.82838 0.88032 0.84917 0.86626 0.85758 0.75853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.87 71.98 0.64 -0.60 16 2 C -0.11 -1.68 2.50 -11.54 -0.03 -1.71 16 3 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.50 14.11 6.97 87.65 0.61 14.73 16 5 O -0.52 -19.42 12.98 -3.02 -0.04 -19.46 16 6 N -0.65 -19.58 5.25 -308.65 -1.62 -21.20 16 7 C 0.36 14.91 7.42 132.75 0.98 15.89 16 8 C -0.30 -13.05 9.73 22.99 0.22 -12.82 16 9 C 0.11 5.68 5.16 -21.11 -0.11 5.57 16 10 C -0.47 -25.02 9.67 23.52 0.23 -24.79 16 11 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 12 C 0.05 2.75 5.48 85.29 0.47 3.22 16 13 N -0.84 -43.70 13.92 21.84 0.30 -43.40 16 14 Si 0.97 41.60 24.42 68.60 1.68 43.27 16 15 H -0.26 -10.43 6.67 99.48 0.66 -9.77 16 16 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.26 -11.62 6.65 99.48 0.66 -10.96 16 18 C -0.31 -14.79 7.11 22.84 0.16 -14.63 16 19 C 0.13 5.94 11.15 84.50 0.94 6.88 16 20 N -0.57 -25.95 7.85 -193.53 -1.52 -27.47 16 21 C 0.14 2.18 2.55 45.44 0.12 2.30 16 22 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 23 C -0.11 -0.71 6.52 31.65 0.21 -0.51 16 24 C -0.15 -1.63 6.86 30.59 0.21 -1.42 16 25 C 0.50 12.08 8.44 87.86 0.74 12.82 16 26 O -0.60 -21.05 18.03 -3.02 -0.05 -21.11 16 27 N -0.72 -16.88 5.39 -439.16 -2.37 -19.24 16 28 H 0.07 0.61 7.68 -2.39 -0.02 0.59 16 29 H 0.11 0.14 6.17 -2.39 -0.01 0.12 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.43 9.20 8.27 -92.71 -0.77 8.43 16 32 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 33 H 0.30 13.92 8.29 -92.70 -0.77 13.15 16 34 H 0.11 5.11 4.43 -2.91 -0.01 5.10 16 35 H 0.15 5.93 8.06 -2.91 -0.02 5.91 16 36 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.13 -0.05 5.89 -2.39 -0.01 -0.06 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.40 11.78 7.92 -92.71 -0.73 11.04 16 Total: -1.00 -77.12 328.33 1.29 -75.83 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.49 Total: 27.85 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.39 Total: 4.92 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -5.20 Total: -111.31 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.09 Total: -40.57 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.68 Total: 43.27 kcal Total: -77.12 1.29 -75.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599686938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.199 kcal (2) G-P(sol) polarization free energy of solvation -77.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds