Wall clock time and date at job start Tue Mar 31 2020 08:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46961 * 2 1 4 4 C 1.50696 * 109.47092 * 239.99936 * 2 1 3 5 5 O 1.21276 * 119.99721 * 239.99657 * 4 2 1 6 6 N 1.34780 * 120.00179 * 60.00145 * 4 2 1 7 7 C 1.39466 * 119.99808 * 175.27460 * 6 4 2 8 8 C 1.38599 * 119.57874 * 174.63658 * 7 6 4 9 9 C 1.40811 * 118.79543 * 180.25218 * 8 7 6 10 10 C 1.41546 * 120.99340 * 179.79937 * 9 8 7 11 11 H 1.08002 * 120.00097 * 332.81472 * 10 9 8 12 12 C 1.40034 * 119.99752 * 153.09531 * 10 9 8 13 13 N 1.30736 * 120.00142 * 160.45499 * 12 10 9 14 14 Si 1.86801 * 119.99796 * 340.45018 * 12 10 9 15 15 H 1.48501 * 109.46928 * 93.15048 * 14 12 10 16 16 H 1.48500 * 109.46756 * 213.14465 * 14 12 10 17 17 H 1.48494 * 109.47131 * 333.14545 * 14 12 10 18 18 C 1.41170 * 118.00586 * 359.51788 * 9 8 7 19 19 C 1.37591 * 119.01866 * 0.25899 * 18 9 8 20 20 N 1.32082 * 121.10616 * 359.97223 * 19 18 9 21 21 C 1.53001 * 109.46941 * 119.99628 * 2 1 3 22 22 H 1.08996 * 110.21499 * 59.52691 * 21 2 1 23 23 C 1.54482 * 110.24786 * 297.50441 * 21 2 1 24 24 C 1.54630 * 101.76229 * 266.41544 * 23 21 2 25 25 C 1.51274 * 104.19650 * 335.20330 * 24 23 21 26 26 O 1.21287 * 124.94065 * 196.23349 * 25 24 23 27 27 N 1.34415 * 110.11858 * 16.25441 * 25 24 23 28 28 H 1.08997 * 109.47002 * 299.99971 * 1 2 3 29 29 H 1.09001 * 109.46718 * 60.00401 * 1 2 3 30 30 H 1.09005 * 109.46961 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99727 * 355.27134 * 6 4 2 32 32 H 1.08006 * 120.60136 * 0.02562 * 8 7 6 33 33 H 0.97001 * 120.00156 * 179.97438 * 13 12 10 34 34 H 1.08003 * 120.49231 * 180.27622 * 18 9 8 35 35 H 1.07995 * 119.44599 * 179.97438 * 19 18 9 36 36 H 1.08995 * 110.96588 * 24.53455 * 23 21 2 37 37 H 1.09002 * 110.96706 * 148.29763 * 23 21 2 38 38 H 1.09005 * 110.48504 * 216.52031 * 24 23 21 39 39 H 1.09006 * 110.59666 * 93.94051 * 24 23 21 40 40 H 0.97005 * 124.35290 * 180.38934 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.2508 -0.8470 -3.5915 8 6 1.8259 -0.4416 -4.8470 9 6 2.3822 -1.0592 -5.9835 10 6 1.9792 -0.6844 -7.2876 11 1 0.9916 -0.2793 -7.4520 12 6 2.8588 -0.8442 -8.3653 13 7 2.3966 -0.8712 -9.5880 14 14 4.6928 -1.0188 -8.0561 15 1 5.0443 -2.4586 -7.9637 16 1 5.4448 -0.3965 -9.1752 17 1 5.0470 -0.3400 -6.7838 18 6 3.3584 -2.0592 -5.7835 19 6 3.7201 -2.3913 -4.4982 20 7 3.1705 -1.7910 -3.4580 21 6 2.0400 -0.7212 1.2493 22 1 1.6765 -1.7486 1.2659 23 6 1.5871 0.0286 2.5218 24 6 2.8021 0.9447 2.7970 25 6 3.9623 0.2293 2.1410 26 8 5.1331 0.4616 2.3566 27 7 3.5071 -0.7008 1.2841 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.0941 0.4966 -2.5448 32 1 1.0789 0.3315 -4.9515 33 1 3.0059 -0.9816 -10.3346 34 1 3.8148 -2.5561 -6.6269 35 1 4.4659 -3.1557 -4.3372 36 1 0.6903 0.6174 2.3291 37 1 1.4268 -0.6651 3.3470 38 1 2.9711 1.0423 3.8695 39 1 2.6533 1.9252 2.3446 40 1 4.0752 -1.2837 0.7563 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599686939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:52 Heat of formation + Delta-G solvation = -64.619346 kcal Electronic energy + Delta-G solvation = -24323.220650 eV Core-core repulsion = 20715.496100 eV Total energy + Delta-G solvation = -3607.724550 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92490 -40.98481 -39.72082 -37.76494 -36.23125 -35.50093 -34.00420 -33.19160 -32.05129 -30.59737 -27.95297 -27.65578 -25.82079 -23.90246 -23.63806 -21.96342 -21.38799 -20.71943 -19.91036 -18.62171 -18.22881 -17.86341 -17.35780 -16.79112 -16.61206 -16.17172 -16.02419 -15.79923 -15.36645 -14.91798 -14.86491 -14.65949 -14.43599 -14.34578 -14.10355 -13.67424 -13.47187 -13.07711 -12.98807 -12.80644 -12.69750 -12.55824 -12.40816 -12.14531 -11.74871 -11.71579 -11.48908 -11.22582 -10.91628 -10.89117 -10.20187 -10.12605 -9.67834 -9.03922 -8.98774 -6.74615 0.51809 0.72961 1.24763 1.37965 1.44589 1.58090 1.81026 2.04907 2.07163 2.46990 2.63533 3.33388 3.50807 3.55559 3.64138 3.78612 4.06626 4.14606 4.24302 4.32993 4.44733 4.49650 4.61777 4.66779 4.72577 4.77180 4.85095 4.93379 5.01405 5.14590 5.18277 5.22996 5.24559 5.41686 5.45080 5.70111 5.84424 6.03961 6.14417 6.18131 6.48706 6.49959 6.67168 7.21206 7.26158 7.67908 8.02990 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.003308 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.706523 B = 8463.101981 C = 9011.209371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 H 0.118 0.882 4 C 0.499 3.501 5 O -0.521 6.521 6 N -0.651 5.651 7 C 0.360 3.640 8 C -0.302 4.302 9 C 0.114 3.886 10 C -0.468 4.468 11 H 0.071 0.929 12 C 0.059 3.941 13 N -0.825 5.825 14 Si 0.965 3.035 15 H -0.254 1.254 16 H -0.273 1.273 17 H -0.265 1.265 18 C -0.319 4.319 19 C 0.134 3.866 20 N -0.572 5.572 21 C 0.143 3.857 22 H 0.092 0.908 23 C -0.113 4.113 24 C -0.148 4.148 25 C 0.499 3.501 26 O -0.602 6.602 27 N -0.722 5.722 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.426 0.574 32 H 0.127 0.873 33 H 0.300 0.700 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 4.881 20.044 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.136 0.864 4 C 0.286 3.714 5 O -0.394 6.394 6 N -0.299 5.299 7 C 0.132 3.868 8 C -0.327 4.327 9 C 0.105 3.895 10 C -0.498 4.498 11 H 0.089 0.911 12 C -0.160 4.160 13 N -0.450 5.450 14 Si 0.789 3.211 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.189 1.189 18 C -0.342 4.342 19 C -0.020 4.020 20 N -0.292 5.292 21 C 0.037 3.963 22 H 0.110 0.890 23 C -0.150 4.150 24 C -0.188 4.188 25 C 0.287 3.713 26 O -0.485 6.485 27 N -0.374 5.374 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.265 0.735 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.047 4.140 20.952 22.197 hybrid contribution 0.663 -0.037 -2.133 2.234 sum -5.384 4.103 18.819 20.000 Atomic orbital electron populations 1.21920 0.89024 1.03734 1.05446 1.21906 1.00228 1.01140 0.90096 0.86422 1.21687 0.80012 0.84699 0.84990 1.90729 1.36246 1.26074 1.86301 1.43557 1.46991 1.35577 1.03762 1.18372 0.91242 0.91242 0.85899 1.21382 1.11789 1.08902 0.90661 1.17851 0.89491 0.88821 0.93306 1.19487 1.01948 1.37960 0.90402 0.91099 1.26760 1.05357 0.89932 0.93938 1.69650 1.40301 1.34100 1.00954 0.85520 0.77113 0.79941 0.78484 1.17982 1.19919 1.18916 1.22043 1.08687 1.05574 0.97895 1.22238 0.95996 0.96202 0.87572 1.67417 1.14378 1.13473 1.33954 1.21701 0.78604 1.01260 0.94697 0.88962 1.22842 0.98477 0.98476 0.95177 1.22425 0.92106 1.00689 1.03559 1.21967 0.90214 0.79912 0.79184 1.90709 1.21855 1.68913 1.66979 1.46696 1.09442 1.37989 1.43234 0.86959 0.90852 0.92216 0.73462 0.85499 0.88950 0.87084 0.83013 0.84893 0.87927 0.86634 0.85892 0.75860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.88 71.98 0.64 -0.53 16 2 C -0.11 -1.71 2.50 -11.54 -0.03 -1.74 16 3 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 4 C 0.50 14.31 6.96 87.66 0.61 14.92 16 5 O -0.52 -19.66 12.94 -3.02 -0.04 -19.70 16 6 N -0.65 -19.87 5.31 -308.66 -1.64 -21.51 16 7 C 0.36 15.15 7.40 132.75 0.98 16.13 16 8 C -0.30 -13.42 9.73 22.99 0.22 -13.20 16 9 C 0.11 5.69 5.19 -21.11 -0.11 5.58 16 10 C -0.47 -24.91 9.63 23.52 0.23 -24.69 16 11 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 12 C 0.06 3.01 5.42 85.29 0.46 3.47 16 13 N -0.83 -42.59 13.92 21.84 0.30 -42.29 16 14 Si 0.97 41.79 24.52 68.60 1.68 43.47 16 15 H -0.25 -10.44 6.55 99.48 0.65 -9.79 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.26 -12.14 6.94 99.48 0.69 -11.45 16 18 C -0.32 -15.29 7.37 22.84 0.17 -15.12 16 19 C 0.13 6.09 11.15 84.50 0.94 7.03 16 20 N -0.57 -26.58 7.89 -193.54 -1.53 -28.11 16 21 C 0.14 2.20 2.56 45.45 0.12 2.31 16 22 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 23 C -0.11 -0.72 6.53 31.65 0.21 -0.51 16 24 C -0.15 -1.72 6.86 30.59 0.21 -1.51 16 25 C 0.50 12.44 8.43 87.90 0.74 13.18 16 26 O -0.60 -21.66 18.03 -3.05 -0.05 -21.72 16 27 N -0.72 -17.36 5.34 -439.45 -2.35 -19.70 16 28 H 0.11 0.10 6.24 -2.39 -0.01 0.08 16 29 H 0.07 0.56 7.46 -2.39 -0.02 0.54 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 31 H 0.43 9.32 7.99 -92.71 -0.74 8.58 16 32 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 33 H 0.30 13.79 8.29 -92.71 -0.77 13.02 16 34 H 0.11 5.20 4.44 -2.91 -0.01 5.18 16 35 H 0.15 6.00 8.06 -2.91 -0.02 5.98 16 36 H 0.13 -0.05 5.97 -2.39 -0.01 -0.07 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.40 12.17 7.84 -92.70 -0.73 11.44 16 Total: -1.00 -77.36 328.41 1.34 -76.03 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.43 Total: 28.20 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.39 Total: 5.33 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -5.21 Total: -111.61 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.09 Total: -41.42 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.68 Total: 43.47 kcal Total: -77.36 1.34 -76.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599686939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.408 kcal (2) G-P(sol) polarization free energy of solvation -77.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds