Wall clock time and date at job start Tue Mar 31 2020 08:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 H 1.09000 * 109.46557 * 305.00266 * 3 2 1 5 5 O 1.42893 * 109.47122 * 65.00027 * 3 2 1 6 6 C 1.35904 * 117.00302 * 260.59363 * 5 3 2 7 7 C 1.38738 * 120.05220 * 5.32464 * 6 5 3 8 8 C 1.38144 * 119.94154 * 179.69826 * 7 6 5 9 9 C 1.38270 * 120.05417 * 0.59567 * 8 7 6 10 10 C 1.50706 * 119.94337 * 179.69846 * 9 8 7 11 11 O 1.42903 * 109.47155 * 269.98078 * 10 9 8 12 12 C 1.38266 * 120.11179 * 359.68200 * 9 8 7 13 13 C 1.38139 * 120.05759 * 0.02562 * 12 9 8 14 14 C 1.50698 * 109.47412 * 185.00155 * 3 2 1 15 15 C 1.34943 * 125.48792 * 124.99561 * 14 3 2 16 16 N 1.36660 * 106.73275 * 179.73772 * 15 14 3 17 17 C 1.37568 * 126.89063 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.39015 * 120.00187 * 180.02562 * 17 16 15 20 20 N 1.31254 * 119.99748 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47436 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47113 * 120.00198 * 21 19 17 24 24 H 1.48504 * 109.47322 * 239.99717 * 21 19 17 25 25 N 1.40334 * 106.22375 * 0.02562 * 16 15 14 26 26 N 1.28749 * 108.03008 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.46687 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46926 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.47035 * 60.00303 * 1 2 3 30 30 H 1.09007 * 109.47153 * 239.99808 * 2 1 3 31 31 H 1.09004 * 109.47323 * 120.00329 * 2 1 3 32 32 H 1.07998 * 120.02990 * 359.97438 * 7 6 5 33 33 H 1.07992 * 119.97433 * 180.31697 * 8 7 6 34 34 H 1.09001 * 109.46596 * 29.98031 * 10 9 8 35 35 H 1.09004 * 109.46835 * 149.97899 * 10 9 8 36 36 H 0.96693 * 113.99973 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.97175 * 180.02562 * 12 9 8 38 38 H 1.08001 * 120.02926 * 179.97438 * 13 12 9 39 39 H 1.08007 * 126.63399 * 359.70776 * 15 14 3 40 40 H 0.97004 * 120.00249 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 -0.8418 5 8 1.6620 2.0813 1.2210 6 6 0.5665 2.8847 1.1836 7 6 -0.1944 2.9686 0.0266 8 6 -1.3111 3.7812 -0.0069 9 6 -1.6635 4.5200 1.1075 10 6 -2.8784 5.4109 1.0660 11 8 -2.4986 6.7136 0.6179 12 6 -0.9035 4.4425 2.2599 13 6 0.2106 3.6268 2.3004 14 6 3.5419 1.4443 -0.1239 15 6 4.2494 2.1013 -1.0666 16 7 5.5686 1.8453 -0.8182 17 6 6.6488 2.3116 -1.5311 18 1 6.4951 2.9512 -2.3876 19 6 7.9382 1.9586 -1.1497 20 7 8.1249 1.1808 -0.1091 21 14 9.4048 2.5911 -2.1182 22 1 8.9288 3.4425 -3.2379 23 1 10.2802 3.3914 -1.2246 24 1 10.1717 1.4417 -2.6624 25 7 5.6005 1.0105 0.3094 26 7 4.3867 0.8008 0.6843 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.0835 2.3957 -0.8458 33 1 -1.9067 3.8430 -0.9056 34 1 -3.6137 4.9906 0.3798 35 1 -3.3113 5.4816 2.0639 36 1 -3.2323 7.3414 0.5671 37 1 -1.1811 5.0202 3.1291 38 1 0.8041 3.5670 3.2007 39 1 3.8502 2.7111 -1.8637 40 1 9.0246 0.9347 0.1573 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600973806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:31 Heat of formation + Delta-G solvation = 27.914657 kcal Electronic energy + Delta-G solvation = -23978.306642 eV Core-core repulsion = 20374.594668 eV Total energy + Delta-G solvation = -3603.711974 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48050 -39.85094 -37.99341 -36.33672 -34.26277 -33.38263 -31.37555 -30.86004 -30.82579 -29.48378 -26.43246 -25.50280 -24.74402 -23.10679 -21.64699 -21.42685 -20.60308 -19.60820 -18.20768 -17.60795 -17.52819 -15.87376 -15.61919 -15.50989 -15.22179 -14.82606 -14.60411 -14.08092 -13.84580 -13.63609 -13.47443 -13.20911 -13.11919 -12.90516 -12.70645 -12.07663 -11.97459 -11.89061 -11.53712 -11.44008 -11.24979 -11.09501 -10.96030 -10.66044 -10.48130 -10.29928 -10.15195 -10.01153 -9.59578 -9.24447 -8.88727 -8.75829 -7.90129 -7.55698 -6.87057 -4.68281 1.44645 1.47835 2.76428 2.93252 3.00703 3.18589 3.48846 3.65650 3.75492 4.24466 4.40938 4.56698 4.76539 4.78578 4.88947 4.99089 5.13465 5.19623 5.21926 5.31857 5.38895 5.47074 5.54555 5.70947 5.80719 5.89887 6.02541 6.12700 6.18078 6.23202 6.31540 6.43552 6.50103 6.61647 6.64408 6.72370 6.82121 6.92558 6.98894 7.42739 7.65970 7.82739 7.86869 8.44872 9.04693 10.09343 10.13943 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.003149 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.846775 B = 8888.315400 C = 9614.704210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.186 3.814 4 H 0.078 0.922 5 O -0.295 6.295 6 C 0.156 3.844 7 C -0.219 4.219 8 C -0.058 4.058 9 C -0.150 4.150 10 C 0.125 3.875 11 O -0.569 6.569 12 C -0.060 4.060 13 C -0.164 4.164 14 C -0.086 4.086 15 C -0.106 4.106 16 N -0.146 5.146 17 C -0.313 4.313 18 H 0.122 0.878 19 C 0.047 3.953 20 N -0.757 5.757 21 Si 0.944 3.056 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.270 1.270 25 N -0.090 5.090 26 N -0.302 5.302 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.375 0.625 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.637 5.561 -1.430 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C 0.129 3.871 4 H 0.096 0.904 5 O -0.207 6.207 6 C 0.109 3.891 7 C -0.237 4.237 8 C -0.076 4.076 9 C -0.151 4.151 10 C 0.048 3.952 11 O -0.374 6.374 12 C -0.078 4.078 13 C -0.182 4.182 14 C -0.233 4.233 15 C -0.261 4.261 16 N 0.084 4.916 17 C -0.450 4.450 18 H 0.140 0.860 19 C -0.174 4.174 20 N -0.383 5.383 21 Si 0.766 3.234 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.195 1.195 25 N -0.067 5.067 26 N -0.163 5.163 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.222 0.778 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.173 0.827 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.846 4.253 -0.076 16.407 hybrid contribution -0.410 1.163 -1.434 1.891 sum -16.256 5.416 -1.510 17.201 Atomic orbital electron populations 1.21965 0.96139 1.01543 1.01605 1.21897 0.94943 0.96172 1.03937 1.20400 0.89584 0.92440 0.84690 0.90402 1.86329 1.40944 1.57285 1.36121 1.19220 0.86594 0.89495 0.93795 1.21405 0.98367 1.05137 0.98829 1.20742 0.95535 0.94318 0.97021 1.19376 0.99480 1.01129 0.95077 1.20878 0.93690 0.82568 0.98056 1.86626 1.38824 1.21910 1.90040 1.20754 0.93262 0.96332 0.97423 1.20459 0.99549 0.99809 0.98431 1.20255 0.93868 1.08919 1.00220 1.22232 0.84948 1.12119 1.06849 1.46731 1.03979 1.24266 1.16605 1.20235 0.82998 1.30314 1.11419 0.86004 1.25811 0.99920 0.95354 0.96266 1.70150 1.24164 1.24353 1.19632 0.85614 0.79281 0.79113 0.79361 1.18324 1.19503 1.19525 1.82590 1.10144 1.13763 1.00199 1.73994 0.98184 1.20345 1.23758 0.92748 0.92509 0.92893 0.90553 0.90202 0.84657 0.86174 0.93180 0.93160 0.77811 0.85821 0.85173 0.82673 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.49 37.16 0.32 -1.71 16 2 C -0.13 -2.17 5.60 -26.73 -0.15 -2.32 16 3 C 0.19 3.48 2.61 -27.89 -0.07 3.41 16 4 H 0.08 1.27 5.37 -51.93 -0.28 0.99 16 5 O -0.29 -5.72 9.56 -19.44 -0.19 -5.91 16 6 C 0.16 2.55 5.65 -39.21 -0.22 2.33 16 7 C -0.22 -3.08 7.38 -39.43 -0.29 -3.37 16 8 C -0.06 -0.72 9.69 -39.60 -0.38 -1.11 16 9 C -0.15 -1.84 5.51 -104.60 -0.58 -2.42 16 10 C 0.13 1.16 7.17 36.01 0.26 1.41 16 11 O -0.57 -5.76 13.64 -35.23 -0.48 -6.24 16 12 C -0.06 -0.76 9.69 -39.61 -0.38 -1.14 16 13 C -0.16 -2.45 9.99 -39.43 -0.39 -2.84 16 14 C -0.09 -2.03 6.00 -83.06 -0.50 -2.53 16 15 C -0.11 -2.55 11.45 -16.57 -0.19 -2.74 16 16 N -0.15 -4.00 3.78 -11.47 -0.04 -4.04 16 17 C -0.31 -8.05 10.31 -14.69 -0.15 -8.20 16 18 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 19 C 0.05 1.15 5.50 -17.51 -0.10 1.06 16 20 N -0.76 -20.42 11.89 55.50 0.66 -19.76 16 21 Si 0.94 18.03 29.55 -169.99 -5.02 13.00 16 22 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 25 N -0.09 -2.65 11.73 60.35 0.71 -1.94 16 26 N -0.30 -8.29 12.30 33.16 0.41 -7.89 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 29 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 30 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.14 1.75 4.30 -52.49 -0.23 1.53 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.38 1.81 9.12 45.56 0.42 2.22 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.16 3.09 8.06 -52.48 -0.42 2.67 16 40 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -33.67 339.83 -5.80 -39.46 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.12 Total: 8.36 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.84 Total: -20.16 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 1.73 Total: -33.63 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.67 Total: -12.15 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.02 Total: 13.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.67 -5.80 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.378 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds