Wall clock time and date at job start Tue Mar 31 2020 08:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 H 1.09000 * 109.46557 * 305.00266 * 3 2 1 5 5 O 1.42893 * 109.47122 * 65.00027 * 3 2 1 6 6 C 1.35904 * 117.00302 * 260.59363 * 5 3 2 7 7 C 1.38738 * 120.05220 * 5.32464 * 6 5 3 8 8 C 1.38144 * 119.94154 * 179.69826 * 7 6 5 9 9 C 1.38270 * 120.05417 * 0.59567 * 8 7 6 10 10 C 1.50706 * 119.94337 * 179.69846 * 9 8 7 11 11 O 1.42903 * 109.47155 * 269.98078 * 10 9 8 12 12 C 1.38266 * 120.11179 * 359.68200 * 9 8 7 13 13 C 1.38139 * 120.05759 * 0.02562 * 12 9 8 14 14 C 1.50698 * 109.47412 * 185.00155 * 3 2 1 15 15 C 1.34943 * 125.48792 * 124.99561 * 14 3 2 16 16 N 1.36660 * 106.73275 * 179.73772 * 15 14 3 17 17 C 1.37568 * 126.89063 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.39015 * 120.00187 * 180.02562 * 17 16 15 20 20 N 1.31254 * 119.99748 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47436 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47113 * 120.00198 * 21 19 17 24 24 H 1.48504 * 109.47322 * 239.99717 * 21 19 17 25 25 N 1.40334 * 106.22375 * 0.02562 * 16 15 14 26 26 N 1.28749 * 108.03008 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.46687 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46926 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.47035 * 60.00303 * 1 2 3 30 30 H 1.09007 * 109.47153 * 239.99808 * 2 1 3 31 31 H 1.09004 * 109.47323 * 120.00329 * 2 1 3 32 32 H 1.07998 * 120.02990 * 359.97438 * 7 6 5 33 33 H 1.07992 * 119.97433 * 180.31697 * 8 7 6 34 34 H 1.09001 * 109.46596 * 29.98031 * 10 9 8 35 35 H 1.09004 * 109.46835 * 149.97899 * 10 9 8 36 36 H 0.96693 * 113.99973 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.97175 * 180.02562 * 12 9 8 38 38 H 1.08001 * 120.02926 * 179.97438 * 13 12 9 39 39 H 1.08007 * 126.63399 * 359.70776 * 15 14 3 40 40 H 0.97004 * 120.00249 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 -0.8418 5 8 1.6620 2.0813 1.2210 6 6 0.5665 2.8847 1.1836 7 6 -0.1944 2.9686 0.0266 8 6 -1.3111 3.7812 -0.0069 9 6 -1.6635 4.5200 1.1075 10 6 -2.8784 5.4109 1.0660 11 8 -2.4986 6.7136 0.6179 12 6 -0.9035 4.4425 2.2599 13 6 0.2106 3.6268 2.3004 14 6 3.5419 1.4443 -0.1239 15 6 4.2494 2.1013 -1.0666 16 7 5.5686 1.8453 -0.8182 17 6 6.6488 2.3116 -1.5311 18 1 6.4951 2.9512 -2.3876 19 6 7.9382 1.9586 -1.1497 20 7 8.1249 1.1808 -0.1091 21 14 9.4048 2.5911 -2.1182 22 1 8.9288 3.4425 -3.2379 23 1 10.2802 3.3914 -1.2246 24 1 10.1717 1.4417 -2.6624 25 7 5.6005 1.0105 0.3094 26 7 4.3867 0.8008 0.6843 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.0835 2.3957 -0.8458 33 1 -1.9067 3.8430 -0.9056 34 1 -3.6137 4.9906 0.3798 35 1 -3.3113 5.4816 2.0639 36 1 -3.2323 7.3414 0.5671 37 1 -1.1811 5.0202 3.1291 38 1 0.8041 3.5670 3.2007 39 1 3.8502 2.7111 -1.8637 40 1 9.0246 0.9347 0.1573 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600973806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:30 Heat of formation + Delta-G solvation = 3.551113 kcal Electronic energy + Delta-G solvation = -23979.363124 eV Core-core repulsion = 20374.594668 eV Total energy + Delta-G solvation = -3604.768457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.23855 -41.20351 -39.06868 -37.17633 -36.11139 -34.73913 -33.32793 -31.95437 -31.86139 -31.09511 -28.09318 -26.89567 -25.98528 -24.22342 -23.42499 -22.70409 -22.02924 -21.27570 -19.68349 -19.02800 -18.27073 -17.54545 -17.06226 -16.60968 -16.48767 -16.09745 -15.90040 -15.63465 -15.27145 -15.01072 -14.79071 -14.59565 -14.18511 -13.93415 -13.77931 -13.73293 -13.41477 -13.15115 -13.03024 -12.97722 -12.52171 -12.20445 -12.05295 -11.98081 -11.88401 -11.79734 -11.58035 -11.34971 -11.07744 -10.87009 -10.70911 -9.91449 -9.50348 -9.04250 -8.73684 -6.68197 0.40947 0.43544 1.03002 1.36285 1.58248 1.60116 1.81452 2.03812 2.61587 2.73909 2.75261 2.89181 3.69498 3.73872 3.79506 3.93528 3.99434 4.07611 4.24195 4.27723 4.37185 4.45555 4.47177 4.55265 4.59694 4.69027 4.77723 4.82878 4.87350 4.99359 5.06032 5.09300 5.11924 5.18905 5.35429 5.38920 5.48332 5.66169 5.82584 5.89540 5.92243 6.52939 6.61135 7.00956 7.11679 8.14182 8.27458 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.003149 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.846775 B = 8888.315400 C = 9614.704210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.189 3.811 4 H 0.105 0.895 5 O -0.326 6.326 6 C 0.123 3.877 7 C -0.217 4.217 8 C -0.059 4.059 9 C -0.150 4.150 10 C 0.125 3.875 11 O -0.593 6.593 12 C -0.062 4.062 13 C -0.183 4.183 14 C -0.080 4.080 15 C -0.117 4.117 16 N -0.161 5.161 17 C -0.340 4.340 18 H 0.150 0.850 19 C -0.003 4.003 20 N -0.808 5.808 21 Si 1.030 2.970 22 H -0.237 1.237 23 H -0.268 1.268 24 H -0.266 1.266 25 N -0.150 5.150 26 N -0.337 5.337 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.146 0.854 38 H 0.121 0.879 39 H 0.195 0.805 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.848 7.538 -3.713 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.131 3.869 4 H 0.123 0.877 5 O -0.239 6.239 6 C 0.078 3.922 7 C -0.236 4.236 8 C -0.077 4.077 9 C -0.151 4.151 10 C 0.048 3.952 11 O -0.403 6.403 12 C -0.080 4.080 13 C -0.201 4.201 14 C -0.229 4.229 15 C -0.271 4.271 16 N 0.068 4.932 17 C -0.476 4.476 18 H 0.167 0.833 19 C -0.218 4.218 20 N -0.435 5.435 21 Si 0.847 3.153 22 H -0.159 1.159 23 H -0.193 1.193 24 H -0.191 1.191 25 N -0.126 5.126 26 N -0.196 5.196 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.212 0.788 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.119 6.233 -2.335 19.303 hybrid contribution 0.107 0.653 -0.697 0.961 sum -18.012 6.886 -3.032 19.520 Atomic orbital electron populations 1.21873 0.93009 1.02884 1.02269 1.21831 0.97584 0.94555 1.02520 1.20499 0.86534 0.94063 0.85754 0.87721 1.86249 1.42893 1.58537 1.36255 1.19479 0.86783 0.90516 0.95462 1.21519 0.98540 1.05402 0.98107 1.21119 0.95016 0.93335 0.98219 1.19882 0.99962 1.00806 0.94433 1.20952 0.92352 0.81963 0.99921 1.86546 1.40870 1.22669 1.90184 1.21043 0.92397 0.95726 0.98785 1.20623 1.00688 1.00707 0.98127 1.21167 0.96277 1.06708 0.98744 1.23006 0.84038 1.12272 1.07814 1.47083 1.05533 1.24170 1.16431 1.21102 0.83421 1.30893 1.12208 0.83313 1.27162 1.03046 0.94692 0.96870 1.70309 1.25334 1.25991 1.21832 0.84387 0.74307 0.78627 0.77991 1.15942 1.19325 1.19067 1.82527 1.11282 1.16475 1.02365 1.73949 0.98512 1.21963 1.25210 0.91092 0.93322 0.90613 0.90476 0.93121 0.83665 0.83270 0.90881 0.91285 0.75176 0.83619 0.86069 0.78777 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.49 71.98 0.61 -2.91 16 2 C -0.13 -4.22 5.60 30.59 0.17 -4.05 16 3 C 0.19 7.10 2.61 29.85 0.08 7.18 16 4 H 0.11 3.27 5.37 -2.39 -0.01 3.26 16 5 O -0.33 -13.04 9.56 -92.47 -0.88 -13.92 16 6 C 0.12 4.02 5.65 22.51 0.13 4.15 16 7 C -0.22 -5.68 7.38 22.37 0.16 -5.52 16 8 C -0.06 -1.28 9.69 22.26 0.22 -1.07 16 9 C -0.15 -3.24 5.51 -19.85 -0.11 -3.35 16 10 C 0.13 1.81 7.17 71.24 0.51 2.32 16 11 O -0.59 -9.93 13.64 -148.98 -2.03 -11.96 16 12 C -0.06 -1.47 9.69 22.25 0.22 -1.26 16 13 C -0.18 -5.50 9.99 22.36 0.22 -5.28 16 14 C -0.08 -3.92 6.00 41.55 0.25 -3.67 16 15 C -0.12 -5.65 11.45 83.18 0.95 -4.70 16 16 N -0.16 -9.08 3.78 -190.21 -0.72 -9.80 16 17 C -0.34 -17.58 10.31 83.98 0.87 -16.72 16 18 H 0.15 6.57 7.83 -2.91 -0.02 6.55 16 19 C 0.00 -0.13 5.50 84.97 0.47 0.34 16 20 N -0.81 -45.18 11.89 21.66 0.26 -44.93 16 21 Si 1.03 36.36 29.55 68.60 2.03 38.39 16 22 H -0.24 -7.43 7.11 99.48 0.71 -6.72 16 23 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 24 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 25 N -0.15 -9.35 11.73 37.02 0.43 -8.92 16 26 N -0.34 -19.54 12.30 -48.99 -0.60 -20.15 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.29 6.54 -2.39 -0.02 1.27 16 29 H 0.08 1.51 6.75 -2.39 -0.02 1.50 16 30 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.15 3.37 4.30 -2.91 -0.01 3.36 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.07 0.75 8.08 -2.38 -0.02 0.73 16 36 H 0.40 2.42 9.12 -74.06 -0.68 1.74 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.20 7.44 8.06 -2.91 -0.02 7.42 16 40 H 0.29 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -78.30 339.83 3.63 -74.68 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.41 Total: 31.15 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 4.74 Total: -34.55 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -0.63 Total: -83.78 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -2.92 Total: -25.88 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Total: -78.30 3.63 -74.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.227 kcal (2) G-P(sol) polarization free energy of solvation -78.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds