Wall clock time and date at job start Tue Mar 31 2020 07:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47043 * 2 1 4 4 C 1.50703 * 109.46440 * 239.99942 * 2 1 3 5 5 H 1.07996 * 120.00228 * 239.99776 * 4 2 1 6 6 C 1.37878 * 119.99798 * 60.00962 * 4 2 1 7 7 N 1.31513 * 120.00196 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47014 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47393 * 119.99645 * 8 6 4 11 11 H 1.48503 * 109.46924 * 239.99315 * 8 6 4 12 12 C 1.52994 * 109.46939 * 120.00470 * 2 1 3 13 13 N 1.46496 * 109.47367 * 299.99552 * 12 2 1 14 14 C 1.34780 * 120.00223 * 180.02562 * 13 12 2 15 15 O 1.21625 * 119.99907 * 359.97438 * 14 13 12 16 16 C 1.47216 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.37965 * 126.81645 * 0.19010 * 16 14 13 18 18 N 1.34138 * 107.93787 * 180.26387 * 17 16 14 19 19 H 0.97003 * 125.13541 * 179.72262 * 18 17 16 20 20 N 1.39769 * 109.72769 * 359.71810 * 18 17 16 21 21 C 1.31591 * 109.04583 * 0.02562 * 20 18 17 22 22 C 1.47664 * 126.53975 * 179.97438 * 21 20 18 23 23 C 1.36021 * 125.93712 * 324.73853 * 22 21 20 24 24 C 1.40894 * 106.73622 * 180.26342 * 23 22 21 25 25 C 1.34754 * 107.04346 * 359.97438 * 24 23 22 26 26 O 1.34298 * 108.68159 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47035 * 299.99606 * 1 2 3 28 28 H 1.08998 * 109.47539 * 59.99099 * 1 2 3 29 29 H 1.08998 * 109.47817 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46613 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47489 * 300.00064 * 3 2 1 32 32 H 1.09000 * 109.47204 * 60.00988 * 3 2 1 33 33 H 0.97003 * 120.00091 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47150 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47509 * 60.00099 * 12 2 1 36 36 H 0.96995 * 120.00051 * 0.02562 * 13 12 2 37 37 H 1.07998 * 126.03216 * 359.97438 * 17 16 14 38 38 H 1.07997 * 126.62823 * 0.24315 * 23 22 21 39 39 H 1.08006 * 126.47929 * 180.02562 * 24 23 22 40 40 H 1.08003 * 125.66243 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9429 0.8299 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 3.1479 -2.2857 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1857 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4911 3.6695 15 8 2.5769 -1.4800 3.7810 16 6 1.3866 0.2026 4.8715 17 6 0.5866 1.3259 4.9089 18 7 0.3740 1.6390 6.1958 19 1 -0.1542 2.3905 6.5076 20 7 1.0282 0.7187 7.0196 21 6 1.6480 -0.1657 6.2678 22 6 2.4571 -1.3075 6.7392 23 6 3.2520 -1.3209 7.8430 24 6 3.8355 -2.6017 7.9072 25 6 3.3729 -3.2998 6.8515 26 8 2.5407 -2.5149 6.1480 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8901 33 1 0.7082 1.1612 -3.4844 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9938 0.7576 2.3565 37 1 0.2034 1.8618 4.0531 38 1 3.4062 -0.5070 8.5359 39 1 4.5229 -2.9571 8.6607 40 1 3.6295 -4.3209 6.6105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601632145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:19 Heat of formation + Delta-G solvation = 50.195651 kcal Electronic energy + Delta-G solvation = -24354.887893 eV Core-core repulsion = 20752.142096 eV Total energy + Delta-G solvation = -3602.745798 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.38951 -41.12039 -38.74543 -36.24823 -33.34369 -33.09660 -32.34123 -31.20920 -30.03013 -28.88147 -25.73288 -25.66920 -24.98719 -23.14161 -22.75275 -21.51981 -20.03973 -19.65339 -18.96264 -18.29491 -17.19239 -16.44437 -15.89110 -15.69128 -15.08101 -14.95153 -14.92424 -14.55699 -14.19959 -13.78979 -13.27848 -12.90468 -12.76528 -12.67504 -12.64931 -12.36111 -12.17578 -11.38548 -11.25570 -11.19819 -10.87603 -10.65653 -10.38938 -10.31748 -10.20319 -9.81538 -9.63331 -9.54835 -9.24626 -8.99146 -8.77890 -8.43145 -8.29700 -8.15548 -6.02464 -4.11931 1.15328 1.45337 2.16233 2.36918 2.79828 3.16649 3.27409 3.36114 3.41006 3.79333 3.83393 4.31786 4.41227 4.50904 4.93064 5.03747 5.06875 5.24703 5.26509 5.44978 5.71383 5.87562 5.97323 6.16632 6.28534 6.36671 6.48122 6.51701 6.80480 6.81934 6.83073 6.94323 7.02788 7.07107 7.10505 7.32422 7.36778 7.55256 7.69808 8.00951 8.09429 8.20077 8.39372 8.81342 8.89997 9.53969 10.99043 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.003444 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.867130 B = 8128.031071 C = 9168.370827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.135 3.865 13 N -0.715 5.715 14 C 0.577 3.423 15 O -0.536 6.536 16 C -0.261 4.261 17 C 0.105 3.895 18 N -0.460 5.460 19 H 0.446 0.554 20 N -0.269 5.269 21 C 0.195 3.805 22 C 0.060 3.940 23 C -0.173 4.173 24 C -0.226 4.226 25 C -0.018 4.018 26 O -0.131 6.131 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.259 0.741 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.393 0.607 37 H 0.193 0.807 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 1.660 17.888 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.012 3.988 13 N -0.366 5.366 14 C 0.363 3.637 15 O -0.413 6.413 16 C -0.276 4.276 17 C -0.045 4.045 18 N -0.167 5.167 19 H 0.291 0.709 20 N -0.092 5.092 21 C 0.028 3.972 22 C 0.007 3.993 23 C -0.194 4.194 24 C -0.245 4.245 25 C -0.089 4.089 26 O -0.023 6.023 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.227 0.773 37 H 0.210 0.790 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.039 1.336 18.669 18.746 hybrid contribution 0.024 0.238 -1.475 1.494 sum -1.015 1.574 17.194 17.296 Atomic orbital electron populations 1.21826 0.97794 0.99230 0.99931 1.18363 0.92767 0.92754 0.90664 1.21826 0.98657 0.98365 0.99933 1.21038 1.31285 1.12044 0.89862 0.92339 1.24876 0.94880 0.94928 0.98854 1.69809 1.36834 1.22853 1.23079 0.86524 0.78644 0.79785 0.82996 1.19725 1.21087 1.21092 1.21692 0.98169 0.95788 0.83102 1.46108 1.52980 1.31789 1.05675 1.17116 0.80639 0.83881 0.82113 1.90793 1.38227 1.25810 1.86512 1.21625 1.10680 1.01523 0.93782 1.23118 0.96397 0.96141 0.88805 1.45876 1.41659 1.25390 1.03764 0.70902 1.77369 1.13248 1.02762 1.15858 1.20114 0.95064 0.92166 0.89895 1.18482 1.01942 0.84767 0.94124 1.21741 1.00316 0.98948 0.98419 1.21697 1.06269 0.94700 1.01847 1.24232 0.94624 0.97216 0.92783 1.84301 1.52189 1.19963 1.45815 0.97624 0.89633 0.95394 0.95406 0.89630 0.97620 0.93108 0.92688 0.92655 0.77257 0.79022 0.83277 0.83250 0.77885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 4 C -0.50 -13.07 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.31 9.35 55.43 0.52 -22.79 16 8 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.13 2.86 4.50 -4.05 -0.02 2.84 16 13 N -0.71 -12.69 4.95 -61.45 -0.30 -13.00 16 14 C 0.58 10.65 7.81 -12.61 -0.10 10.55 16 15 O -0.54 -11.71 14.59 -15.18 -0.22 -11.93 16 16 C -0.26 -3.96 6.32 -102.91 -0.65 -4.61 16 17 C 0.10 1.09 11.50 -16.64 -0.19 0.90 16 18 N -0.46 -4.29 7.20 30.81 0.22 -4.07 16 19 H 0.45 2.25 8.96 -182.85 -1.64 0.61 16 20 N -0.27 -3.53 12.67 34.50 0.44 -3.10 16 21 C 0.20 3.02 7.29 -80.68 -0.59 2.43 16 22 C 0.06 0.95 6.74 -36.53 -0.25 0.70 16 23 C -0.17 -2.30 10.85 -39.37 -0.43 -2.73 16 24 C -0.23 -2.62 10.89 -39.81 -0.43 -3.06 16 25 C -0.02 -0.23 12.08 29.50 0.36 0.13 16 26 O -0.13 -2.18 8.76 -15.82 -0.14 -2.32 16 27 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.39 6.00 5.11 -40.82 -0.21 5.79 16 37 H 0.19 1.28 7.48 -52.49 -0.39 0.89 16 38 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.20 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -32.56 336.38 -7.67 -40.23 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.08 Total: 4.86 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.14 Total: -8.52 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.87 Total: -42.96 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.36 Total: -14.24 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.56 -7.67 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601632145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.423 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds