Wall clock time and date at job start Tue Mar 31 2020 07:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47043 * 2 1 4 4 C 1.50703 * 109.46440 * 239.99942 * 2 1 3 5 5 H 1.07996 * 120.00228 * 239.99776 * 4 2 1 6 6 C 1.37878 * 119.99798 * 60.00962 * 4 2 1 7 7 N 1.31513 * 120.00196 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47014 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47393 * 119.99645 * 8 6 4 11 11 H 1.48503 * 109.46924 * 239.99315 * 8 6 4 12 12 C 1.52994 * 109.46939 * 120.00470 * 2 1 3 13 13 N 1.46496 * 109.47367 * 299.99552 * 12 2 1 14 14 C 1.34780 * 120.00223 * 180.02562 * 13 12 2 15 15 O 1.21625 * 119.99907 * 359.97438 * 14 13 12 16 16 C 1.47216 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.37965 * 126.81645 * 0.19010 * 16 14 13 18 18 N 1.34138 * 107.93787 * 180.26387 * 17 16 14 19 19 H 0.97003 * 125.13541 * 179.72262 * 18 17 16 20 20 N 1.39769 * 109.72769 * 359.71810 * 18 17 16 21 21 C 1.31591 * 109.04583 * 0.02562 * 20 18 17 22 22 C 1.47664 * 126.53975 * 179.97438 * 21 20 18 23 23 C 1.36021 * 125.93712 * 324.73853 * 22 21 20 24 24 C 1.40894 * 106.73622 * 180.26342 * 23 22 21 25 25 C 1.34754 * 107.04346 * 359.97438 * 24 23 22 26 26 O 1.34298 * 108.68159 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47035 * 299.99606 * 1 2 3 28 28 H 1.08998 * 109.47539 * 59.99099 * 1 2 3 29 29 H 1.08998 * 109.47817 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46613 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47489 * 300.00064 * 3 2 1 32 32 H 1.09000 * 109.47204 * 60.00988 * 3 2 1 33 33 H 0.97003 * 120.00091 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47150 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47509 * 60.00099 * 12 2 1 36 36 H 0.96995 * 120.00051 * 0.02562 * 13 12 2 37 37 H 1.07998 * 126.03216 * 359.97438 * 17 16 14 38 38 H 1.07997 * 126.62823 * 0.24315 * 23 22 21 39 39 H 1.08006 * 126.47929 * 180.02562 * 24 23 22 40 40 H 1.08003 * 125.66243 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9429 0.8299 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 3.1479 -2.2857 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1857 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4911 3.6695 15 8 2.5769 -1.4800 3.7810 16 6 1.3866 0.2026 4.8715 17 6 0.5866 1.3259 4.9089 18 7 0.3740 1.6390 6.1958 19 1 -0.1542 2.3905 6.5076 20 7 1.0282 0.7187 7.0196 21 6 1.6480 -0.1657 6.2678 22 6 2.4571 -1.3075 6.7392 23 6 3.2520 -1.3209 7.8430 24 6 3.8355 -2.6017 7.9072 25 6 3.3729 -3.2998 6.8515 26 8 2.5407 -2.5149 6.1480 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8901 33 1 0.7082 1.1612 -3.4844 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9938 0.7576 2.3565 37 1 0.2034 1.8618 4.0531 38 1 3.4062 -0.5070 8.5359 39 1 4.5229 -2.9571 8.6607 40 1 3.6295 -4.3209 6.6105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601632145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:17 Heat of formation + Delta-G solvation = 28.963481 kcal Electronic energy + Delta-G solvation = -24355.808589 eV Core-core repulsion = 20752.142096 eV Total energy + Delta-G solvation = -3603.666494 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.40048 -42.10071 -40.21279 -37.97683 -34.96712 -34.15959 -33.30293 -32.89120 -31.25662 -29.85397 -27.51045 -27.43912 -26.75954 -24.10115 -23.96994 -22.54134 -21.19959 -20.78428 -20.57475 -19.51207 -18.16556 -17.94090 -17.38158 -16.95542 -16.58505 -16.28609 -16.22606 -15.89343 -15.49349 -14.92455 -14.85809 -14.47375 -14.31529 -13.94945 -13.72101 -13.58580 -13.31233 -13.15771 -13.05852 -12.65809 -12.56089 -12.24150 -12.20548 -12.11607 -11.44104 -11.27584 -11.23895 -10.87473 -10.76569 -10.64549 -10.37043 -10.10124 -9.75414 -9.19753 -8.00291 -6.14976 0.12438 0.49254 1.21650 1.42335 1.46803 1.47393 1.56148 1.80694 2.22040 2.40825 2.50263 2.56505 3.23528 3.40475 3.54854 4.06429 4.11845 4.17643 4.31541 4.33039 4.53226 4.57060 4.73258 4.78947 4.95709 5.01982 5.06588 5.10648 5.16072 5.20488 5.24937 5.42511 5.59311 5.65967 5.70750 5.72235 6.04127 6.20935 6.25480 6.25972 6.35436 6.47609 6.80058 6.89142 7.44527 7.52504 8.98630 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.003444 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.867130 B = 8128.031071 C = 9168.370827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.152 3.848 13 N -0.705 5.705 14 C 0.577 3.423 15 O -0.579 6.579 16 C -0.307 4.307 17 C 0.146 3.854 18 N -0.434 5.434 19 H 0.468 0.532 20 N -0.279 5.279 21 C 0.177 3.823 22 C 0.020 3.980 23 C -0.173 4.173 24 C -0.222 4.222 25 C -0.031 4.031 26 O -0.166 6.166 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.260 0.740 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.407 0.593 37 H 0.238 0.762 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 3.131 19.163 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.028 3.972 13 N -0.357 5.357 14 C 0.365 3.635 15 O -0.460 6.460 16 C -0.322 4.322 17 C -0.006 4.006 18 N -0.143 5.143 19 H 0.318 0.682 20 N -0.103 5.103 21 C 0.010 3.990 22 C -0.032 4.032 23 C -0.194 4.194 24 C -0.241 4.241 25 C -0.100 4.100 26 O -0.060 6.060 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.245 0.755 37 H 0.254 0.746 38 H 0.182 0.818 39 H 0.200 0.800 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.826 2.860 19.985 20.272 hybrid contribution 0.244 -0.194 -1.791 1.818 sum -1.582 2.666 18.194 18.457 Atomic orbital electron populations 1.21670 0.96897 0.98653 1.00607 1.18356 0.93401 0.93112 0.90018 1.21669 0.97842 0.97696 1.00611 1.21316 1.31542 1.12064 0.91712 0.94013 1.25402 0.95192 0.95608 1.00788 1.69898 1.37034 1.23248 1.23477 0.85754 0.78139 0.78755 0.80433 1.20204 1.20720 1.20722 1.21224 0.96845 0.95004 0.84085 1.45819 1.53217 1.32039 1.04578 1.17555 0.79710 0.83346 0.82879 1.90763 1.40221 1.27872 1.87137 1.21371 1.14352 1.04162 0.92333 1.23628 0.93139 0.93784 0.90056 1.45935 1.40222 1.24888 1.03283 0.68242 1.77321 1.13491 1.03111 1.16395 1.20303 0.95682 0.92671 0.90364 1.18951 1.03721 0.85123 0.95393 1.22084 0.99451 1.00040 0.97794 1.22100 1.06116 0.93797 1.02096 1.25029 0.93872 0.98323 0.92755 1.84267 1.53552 1.20862 1.47292 0.93928 0.91823 0.96575 0.96567 0.91828 0.93913 0.93057 0.94671 0.94662 0.75538 0.74575 0.81761 0.79997 0.74905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 4 C -0.53 -27.83 8.01 25.60 0.21 -27.62 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.25 16 6 C 0.03 1.56 5.15 84.66 0.44 1.99 16 7 N -0.90 -47.00 9.35 21.45 0.20 -46.80 16 8 Si 0.94 42.46 29.54 68.60 2.03 44.49 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.53 4.50 86.38 0.39 6.92 16 13 N -0.70 -24.25 4.95 -466.59 -2.31 -26.56 16 14 C 0.58 21.25 7.81 86.60 0.68 21.92 16 15 O -0.58 -26.24 14.59 15.43 0.23 -26.02 16 16 C -0.31 -8.92 6.32 -18.76 -0.12 -9.04 16 17 C 0.15 2.49 11.50 84.28 0.97 3.46 16 18 N -0.43 -6.57 7.20 -56.44 -0.41 -6.98 16 19 H 0.47 2.68 8.96 -213.53 -1.91 0.77 16 20 N -0.28 -6.85 12.67 -44.77 -0.57 -7.42 16 21 C 0.18 5.39 7.29 43.90 0.32 5.71 16 22 C 0.02 0.65 6.74 24.25 0.16 0.81 16 23 C -0.17 -4.52 10.85 22.40 0.24 -4.28 16 24 C -0.22 -4.92 10.89 22.12 0.24 -4.68 16 25 C -0.03 -0.76 12.08 67.02 0.81 0.05 16 26 O -0.17 -5.73 8.76 13.14 0.12 -5.62 16 27 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 28 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 29 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 32 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 33 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 34 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.41 11.19 5.11 -92.71 -0.47 10.72 16 37 H 0.24 1.76 7.48 -2.91 -0.02 1.74 16 38 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.23 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -74.12 336.38 3.46 -70.65 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -1.29 Total: 15.84 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.47 Total: -11.60 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -3.08 Total: -87.75 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: 0.34 Total: -31.64 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -74.12 3.46 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601632145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.618 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds