Wall clock time and date at job start Tue Mar 31 2020 08:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35778 * 116.99805 * 2 1 4 4 C 1.38946 * 119.91192 * 179.97438 * 3 2 1 5 5 C 1.37760 * 120.09250 * 179.97438 * 4 3 2 6 6 C 1.39692 * 119.90668 * 0.02562 * 5 4 3 7 7 C 1.47660 * 120.08629 * 179.97438 * 6 5 4 8 8 N 1.32200 * 126.68235 * 180.29058 * 7 6 5 9 9 C 1.34199 * 105.53417 * 180.14140 * 8 7 6 10 10 C 1.50706 * 126.17987 * 179.85131 * 9 8 7 11 11 N 1.46908 * 109.46935 * 269.71481 * 10 9 8 12 12 C 1.46894 * 110.99837 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47104 * 324.99694 * 12 11 10 14 14 C 1.52997 * 109.47515 * 84.99962 * 12 11 10 15 15 C 1.50708 * 109.46991 * 205.00145 * 12 11 10 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 11 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00195 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99968 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46959 * 89.99935 * 19 17 15 21 21 H 1.48491 * 109.47193 * 210.00326 * 19 17 15 22 22 H 1.48498 * 109.47096 * 330.00479 * 19 17 15 23 23 N 1.30039 * 107.63735 * 359.58856 * 9 8 7 24 24 O 1.21284 * 110.50320 * 0.26404 * 23 9 8 25 25 C 1.39684 * 119.82630 * 0.25386 * 6 5 4 26 26 C 1.37769 * 119.90742 * 359.46541 * 25 6 5 27 27 H 1.09001 * 109.47305 * 300.00487 * 1 2 3 28 28 H 1.09005 * 109.47163 * 60.00256 * 1 2 3 29 29 H 1.08999 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.95261 * 359.97438 * 4 3 2 31 31 H 1.07989 * 120.04630 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47103 * 149.71621 * 10 9 8 33 33 H 1.09002 * 109.47193 * 29.71137 * 10 9 8 34 34 H 1.00903 * 110.99526 * 303.95351 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 36 36 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 37 37 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 38 38 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.04936 * 179.75329 * 25 6 5 40 40 H 1.07999 * 119.95644 * 180.25660 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4330 1.2804 0.0005 5 6 4.0623 2.5059 0.0000 6 6 3.3032 3.6786 -0.0005 7 6 3.9736 4.9943 -0.0005 8 7 3.3874 6.1793 0.0044 9 6 4.3870 7.0747 -0.0011 10 6 4.2380 8.5743 -0.0018 11 7 4.1901 9.0610 -1.3871 12 6 4.0456 10.5222 -1.4269 13 1 3.4208 10.8484 -0.5954 14 6 5.4250 11.1745 -1.3149 15 6 3.4022 10.9281 -2.7280 16 1 3.1285 10.1756 -3.4528 17 6 3.1630 12.2598 -2.9928 18 7 3.4967 13.1760 -2.1104 19 14 2.3661 12.7629 -4.6057 20 1 0.8903 12.7865 -4.4425 21 1 2.8431 14.1147 -4.9930 22 1 2.7315 11.7871 -5.6639 23 7 5.5074 6.4145 0.0001 24 8 5.2966 5.2201 0.0004 25 6 1.9084 3.6034 0.0048 26 6 1.2868 2.3739 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.0191 0.3733 0.0014 31 1 5.1408 2.5600 0.0000 32 1 5.0875 9.0241 0.5121 33 1 3.3163 8.8481 0.5116 34 1 5.0050 8.7643 -1.9029 35 1 6.0497 10.8484 -2.1464 36 1 5.8903 10.8810 -0.3739 37 1 5.3177 12.2589 -1.3449 38 1 3.3288 14.1131 -2.2969 39 1 1.3180 4.5077 0.0085 40 1 0.2084 2.3148 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:10 Heat of formation + Delta-G solvation = 62.504701 kcal Electronic energy + Delta-G solvation = -23141.012544 eV Core-core repulsion = 19538.800506 eV Total energy + Delta-G solvation = -3602.212037 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.32223 -40.52823 -37.98199 -36.66966 -35.25297 -33.23994 -32.20093 -31.59247 -30.05922 -28.93055 -27.79346 -25.57640 -25.03559 -24.34321 -23.06100 -22.44855 -20.86958 -20.26202 -18.67281 -17.92143 -17.79237 -16.56643 -16.33557 -16.26494 -16.19534 -14.89538 -14.85231 -14.52690 -14.18728 -13.93580 -13.72391 -13.36217 -13.28698 -12.80814 -12.58859 -12.42808 -12.15690 -11.98229 -11.83603 -11.60455 -11.28967 -11.23002 -10.93511 -10.85751 -10.77955 -10.57360 -10.17030 -10.14175 -9.84901 -9.47355 -9.06643 -8.41397 -8.37262 -7.38234 -5.99713 -4.02911 0.35273 0.94801 1.65929 2.48248 2.72941 2.82190 3.33613 3.39396 3.40729 3.44185 3.73730 4.21289 4.38202 4.44786 4.46442 4.68757 4.71938 4.82923 4.97941 5.02810 5.07571 5.17946 5.32110 5.38683 5.61413 5.65064 5.79689 5.84697 5.93206 6.08608 6.09278 6.20297 6.25898 6.65142 6.81125 6.88168 7.02867 7.25406 7.69941 7.84255 8.19705 8.34076 8.41617 8.53083 9.03564 9.62137 11.07501 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.002552 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.913870 B =10969.919395 C =11955.746365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.151 3.849 4 C -0.155 4.155 5 C -0.040 4.040 6 C -0.062 4.062 7 C 0.213 3.787 8 N -0.457 5.457 9 C 0.197 3.803 10 C 0.146 3.854 11 N -0.674 5.674 12 C 0.213 3.787 13 H 0.038 0.962 14 C -0.171 4.171 15 C -0.495 4.495 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 N -0.387 5.387 24 O 0.077 5.923 25 C -0.020 4.020 26 C -0.212 4.212 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.329 0.671 35 H 0.029 0.971 36 H 0.006 0.994 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.145 0.855 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -25.722 6.934 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.104 3.896 4 C -0.174 4.174 5 C -0.060 4.060 6 C -0.064 4.064 7 C -0.004 4.004 8 N -0.191 5.191 9 C -0.076 4.076 10 C 0.015 3.985 11 N -0.306 5.306 12 C 0.106 3.894 13 H 0.056 0.944 14 C -0.230 4.230 15 C -0.533 4.533 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.728 3.272 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 N -0.095 5.095 24 O 0.018 5.982 25 C -0.040 4.040 26 C -0.231 4.231 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.145 0.855 35 H 0.048 0.952 36 H 0.025 0.975 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.163 0.837 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.363 -25.089 6.903 26.238 hybrid contribution 0.242 0.688 -0.604 0.947 sum -3.120 -24.401 6.299 25.394 Atomic orbital electron populations 1.23151 0.77822 1.04299 1.01852 1.86060 1.21896 1.26792 1.87899 1.19315 0.92455 0.84301 0.93522 1.20309 0.91262 0.98500 1.07291 1.21082 1.00478 0.90121 0.94332 1.17109 0.92638 0.85906 1.10784 1.26277 0.81197 0.95263 0.97694 1.72144 1.30398 0.97358 1.19176 1.25998 0.82796 1.00407 0.98401 1.20253 1.02384 0.81199 0.94699 1.60877 1.45306 1.16397 1.08011 1.19230 0.92791 0.79166 0.98228 0.94416 1.22455 0.98444 1.05997 0.96114 1.21107 1.38315 0.91786 1.02133 0.91874 1.24942 0.95950 0.96501 0.97120 1.69876 1.48132 1.00822 1.34875 0.86468 0.79497 0.77598 0.83656 1.20705 1.21389 1.19938 1.74619 1.24078 0.88843 1.21999 1.85351 1.26486 1.20106 1.66252 1.21075 0.92436 0.98308 0.92141 1.21206 1.00637 0.91569 1.09696 0.92238 0.92171 0.87989 0.84158 0.83914 0.93199 0.88387 0.85483 0.95177 0.97481 0.88960 0.93002 0.83723 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.43 10.49 -19.05 -0.20 -2.63 16 3 C 0.15 1.27 6.69 -39.06 -0.26 1.01 16 4 C -0.16 -1.24 9.97 -39.49 -0.39 -1.63 16 5 C -0.04 -0.36 9.72 -39.21 -0.38 -0.74 16 6 C -0.06 -0.70 5.87 -104.97 -0.62 -1.31 16 7 C 0.21 3.10 8.00 -13.88 -0.11 2.99 16 8 N -0.46 -7.90 11.26 -10.17 -0.11 -8.02 16 9 C 0.20 3.62 7.71 -156.56 -1.21 2.41 16 10 C 0.15 2.81 6.11 -4.97 -0.03 2.78 16 11 N -0.67 -15.05 6.22 -109.21 -0.68 -15.73 16 12 C 0.21 5.41 2.57 -68.87 -0.18 5.23 16 13 H 0.04 1.03 7.80 -51.93 -0.41 0.62 16 14 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 15 C -0.49 -13.86 8.84 -34.44 -0.30 -14.16 16 16 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 17 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 18 N -0.90 -25.69 11.32 55.43 0.63 -25.06 16 19 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 N -0.39 -6.81 12.15 31.20 0.38 -6.43 16 24 O 0.08 1.17 11.13 16.59 0.18 1.36 16 25 C -0.02 -0.20 9.70 -39.21 -0.38 -0.58 16 26 C -0.21 -1.75 9.02 -39.49 -0.36 -2.11 16 27 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 28 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.14 1.01 7.94 -52.49 -0.42 0.59 16 32 H 0.05 0.93 7.43 -51.93 -0.39 0.55 16 33 H 0.10 1.87 8.06 -51.93 -0.42 1.45 16 34 H 0.33 7.20 8.46 -39.29 -0.33 6.87 16 35 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 36 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.14 1.52 7.87 -52.49 -0.41 1.11 16 40 H 0.14 0.82 6.28 -52.49 -0.33 0.49 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -31.45 344.80 -7.63 -39.08 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.01 Total: 2.94 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.99 Total: -7.38 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.21 Total: -55.24 kcal Atomic # 8 Polarization: -1.25 SS G_CDS: -0.02 Total: -1.27 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.45 -7.63 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.583 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds