Wall clock time and date at job start Tue Mar 31 2020 08:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35778 * 116.99805 * 2 1 4 4 C 1.38946 * 119.91192 * 179.97438 * 3 2 1 5 5 C 1.37760 * 120.09250 * 179.97438 * 4 3 2 6 6 C 1.39692 * 119.90668 * 0.02562 * 5 4 3 7 7 C 1.47660 * 120.08629 * 179.97438 * 6 5 4 8 8 N 1.32200 * 126.68235 * 180.29058 * 7 6 5 9 9 C 1.34199 * 105.53417 * 180.14140 * 8 7 6 10 10 C 1.50706 * 126.17987 * 179.85131 * 9 8 7 11 11 N 1.46908 * 109.46935 * 269.71481 * 10 9 8 12 12 C 1.46894 * 110.99837 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47104 * 324.99694 * 12 11 10 14 14 C 1.52997 * 109.47515 * 84.99962 * 12 11 10 15 15 C 1.50708 * 109.46991 * 205.00145 * 12 11 10 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 11 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00195 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99968 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46959 * 89.99935 * 19 17 15 21 21 H 1.48491 * 109.47193 * 210.00326 * 19 17 15 22 22 H 1.48498 * 109.47096 * 330.00479 * 19 17 15 23 23 N 1.30039 * 107.63735 * 359.58856 * 9 8 7 24 24 O 1.21284 * 110.50320 * 0.26404 * 23 9 8 25 25 C 1.39684 * 119.82630 * 0.25386 * 6 5 4 26 26 C 1.37769 * 119.90742 * 359.46541 * 25 6 5 27 27 H 1.09001 * 109.47305 * 300.00487 * 1 2 3 28 28 H 1.09005 * 109.47163 * 60.00256 * 1 2 3 29 29 H 1.08999 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.95261 * 359.97438 * 4 3 2 31 31 H 1.07989 * 120.04630 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47103 * 149.71621 * 10 9 8 33 33 H 1.09002 * 109.47193 * 29.71137 * 10 9 8 34 34 H 1.00903 * 110.99526 * 303.95351 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 36 36 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 37 37 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 38 38 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.04936 * 179.75329 * 25 6 5 40 40 H 1.07999 * 119.95644 * 180.25660 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4330 1.2804 0.0005 5 6 4.0623 2.5059 0.0000 6 6 3.3032 3.6786 -0.0005 7 6 3.9736 4.9943 -0.0005 8 7 3.3874 6.1793 0.0044 9 6 4.3870 7.0747 -0.0011 10 6 4.2380 8.5743 -0.0018 11 7 4.1901 9.0610 -1.3871 12 6 4.0456 10.5222 -1.4269 13 1 3.4208 10.8484 -0.5954 14 6 5.4250 11.1745 -1.3149 15 6 3.4022 10.9281 -2.7280 16 1 3.1285 10.1756 -3.4528 17 6 3.1630 12.2598 -2.9928 18 7 3.4967 13.1760 -2.1104 19 14 2.3661 12.7629 -4.6057 20 1 0.8903 12.7865 -4.4425 21 1 2.8431 14.1147 -4.9930 22 1 2.7315 11.7871 -5.6639 23 7 5.5074 6.4145 0.0001 24 8 5.2966 5.2201 0.0004 25 6 1.9084 3.6034 0.0048 26 6 1.2868 2.3739 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.0191 0.3733 0.0014 31 1 5.1408 2.5600 0.0000 32 1 5.0875 9.0241 0.5121 33 1 3.3163 8.8481 0.5116 34 1 5.0050 8.7643 -1.9029 35 1 6.0497 10.8484 -2.1464 36 1 5.8903 10.8810 -0.3739 37 1 5.3177 12.2589 -1.3449 38 1 3.3288 14.1131 -2.2969 39 1 1.3180 4.5077 0.0085 40 1 0.2084 2.3148 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:10 Heat of formation + Delta-G solvation = 40.622616 kcal Electronic energy + Delta-G solvation = -23141.961422 eV Core-core repulsion = 19538.800506 eV Total energy + Delta-G solvation = -3603.160916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.60315 -41.15316 -38.64691 -38.35058 -36.73538 -34.78407 -33.80920 -32.27307 -31.14890 -30.53835 -28.26118 -27.37919 -26.97074 -25.40429 -23.97494 -23.36754 -22.29881 -21.89354 -19.38940 -19.21053 -18.92208 -18.28508 -17.48229 -17.05105 -16.83836 -16.68282 -16.28081 -15.60713 -15.53380 -14.99546 -14.77133 -14.50701 -14.26281 -13.97378 -13.92268 -13.72242 -13.47624 -13.31341 -12.89961 -12.83502 -12.79909 -12.76044 -12.52253 -12.23290 -12.16839 -12.11245 -11.93810 -11.83092 -11.21081 -11.10471 -10.50765 -10.14395 -9.21845 -9.16871 -8.12304 -6.23383 -0.56945 0.28279 0.55716 1.26482 1.43072 1.43345 1.54498 1.66843 2.28060 2.42079 2.52463 2.67198 2.91068 3.16371 3.64677 3.73663 3.79152 3.87878 4.09372 4.26712 4.29101 4.40095 4.44287 4.49576 4.54127 4.60600 4.69388 4.79952 4.84581 4.91127 4.98226 5.01479 5.09991 5.23196 5.30477 5.34651 5.54508 5.65400 5.73487 6.18438 6.31453 6.49190 6.57641 6.87163 7.09633 7.45715 8.93560 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.002552 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.913870 B =10969.919395 C =11955.746365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.156 3.844 4 C -0.156 4.156 5 C -0.031 4.031 6 C -0.091 4.091 7 C 0.232 3.768 8 N -0.488 5.488 9 C 0.183 3.817 10 C 0.152 3.848 11 N -0.679 5.679 12 C 0.218 3.782 13 H 0.013 0.987 14 C -0.158 4.158 15 C -0.517 4.517 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.963 3.037 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.272 1.272 23 N -0.399 5.399 24 O 0.086 5.914 25 C -0.026 4.026 26 C -0.211 4.211 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.331 0.669 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.263 0.737 39 H 0.135 0.865 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -28.043 6.600 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.108 3.892 4 C -0.174 4.174 5 C -0.051 4.051 6 C -0.093 4.093 7 C 0.016 3.984 8 N -0.221 5.221 9 C -0.090 4.090 10 C 0.022 3.978 11 N -0.310 5.310 12 C 0.110 3.890 13 H 0.031 0.969 14 C -0.217 4.217 15 C -0.556 4.556 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.788 3.212 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.196 1.196 23 N -0.107 5.107 24 O 0.026 5.974 25 C -0.046 4.046 26 C -0.229 4.229 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.180 0.820 31 H 0.178 0.822 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.147 0.853 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.153 0.847 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.880 -27.426 6.578 28.470 hybrid contribution 0.313 1.161 -0.449 1.283 sum -3.568 -26.265 6.129 27.206 Atomic orbital electron populations 1.23456 0.76012 1.05991 1.02685 1.86065 1.23803 1.26275 1.87397 1.19517 0.92853 0.84658 0.92150 1.20587 0.91484 0.98904 1.06432 1.21263 1.01263 0.89481 0.93055 1.17269 0.93160 0.85052 1.13866 1.26825 0.80646 0.95797 0.95135 1.72112 1.30606 0.98215 1.21168 1.25727 0.83488 0.99995 0.99789 1.20106 1.02533 0.82303 0.92908 1.60710 1.45635 1.14571 1.10098 1.18999 0.92718 0.80985 0.96258 0.96861 1.22263 0.98029 1.04149 0.97299 1.21358 1.39185 0.92017 1.03014 0.92991 1.25695 0.96332 0.96432 1.00306 1.69990 1.48554 1.01072 1.36356 0.85486 0.78609 0.77341 0.79741 1.20201 1.20652 1.19624 1.74573 1.24045 0.89641 1.22477 1.85312 1.26856 1.19087 1.66160 1.21089 0.92114 0.98873 0.92530 1.21385 1.01828 0.90708 1.08976 0.91273 0.91437 0.86036 0.81951 0.82239 0.92478 0.88705 0.85257 0.95006 0.95359 0.91346 0.92814 0.84701 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.08 10.49 -91.07 -0.96 -5.03 16 3 C 0.16 2.23 6.69 22.61 0.15 2.38 16 4 C -0.16 -2.08 9.97 22.33 0.22 -1.86 16 5 C -0.03 -0.49 9.72 22.51 0.22 -0.27 16 6 C -0.09 -1.96 5.87 -20.09 -0.12 -2.08 16 7 C 0.23 6.69 8.00 87.24 0.70 7.39 16 8 N -0.49 -17.08 11.26 -302.68 -3.41 -20.49 16 9 C 0.18 6.79 7.71 138.53 1.07 7.86 16 10 C 0.15 5.98 6.11 85.56 0.52 6.51 16 11 N -0.68 -30.81 6.22 -499.44 -3.11 -33.92 16 12 C 0.22 11.31 2.57 44.17 0.11 11.42 16 13 H 0.01 0.75 7.80 -2.39 -0.02 0.74 16 14 C -0.16 -7.73 8.94 71.98 0.64 -7.08 16 15 C -0.52 -29.40 8.84 25.60 0.23 -29.17 16 16 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -53.14 11.32 21.44 0.24 -52.89 16 19 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 N -0.40 -13.99 12.15 -58.54 -0.71 -14.71 16 24 O 0.09 2.58 11.13 69.45 0.77 3.35 16 25 C -0.03 -0.51 9.70 22.51 0.22 -0.30 16 26 C -0.21 -3.07 9.02 22.33 0.20 -2.87 16 27 H 0.07 0.28 7.65 -2.39 -0.02 0.26 16 28 H 0.07 0.31 7.65 -2.38 -0.02 0.29 16 29 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.16 1.89 7.94 -2.92 -0.02 1.86 16 32 H 0.06 2.14 7.43 -2.39 -0.02 2.13 16 33 H 0.09 3.73 8.06 -2.39 -0.02 3.71 16 34 H 0.33 14.65 8.46 -89.69 -0.76 13.89 16 35 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 36 H 0.03 1.21 7.45 -2.39 -0.02 1.19 16 37 H 0.07 3.69 6.07 -2.38 -0.01 3.68 16 38 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 39 H 0.14 2.87 7.87 -2.91 -0.02 2.85 16 40 H 0.16 1.52 6.28 -2.91 -0.02 1.50 16 Total: -1.00 -67.38 344.80 0.91 -66.48 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.32 Total: 16.43 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 5.73 Total: -5.82 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -6.98 Total: -122.01 kcal Atomic # 8 Polarization: -1.50 SS G_CDS: -0.18 Total: -1.68 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.38 0.91 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.100 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds