Wall clock time and date at job start Tue Mar 31 2020 08:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35778 * 117.00031 * 2 1 4 4 C 1.38946 * 119.90968 * 179.97438 * 3 2 1 5 5 C 1.37764 * 120.08679 * 179.97438 * 4 3 2 6 6 C 1.39684 * 119.90820 * 0.02562 * 5 4 3 7 7 C 1.47660 * 120.08283 * 180.02562 * 6 5 4 8 8 N 1.32205 * 126.68365 * 180.34305 * 7 6 5 9 9 C 1.34190 * 105.53997 * 180.13771 * 8 7 6 10 10 C 1.50701 * 126.18371 * 179.84791 * 9 8 7 11 11 N 1.46901 * 109.46921 * 269.71362 * 10 9 8 12 12 C 1.46906 * 110.99793 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46871 * 35.00433 * 12 11 10 14 14 C 1.52994 * 109.47113 * 275.00325 * 12 11 10 15 15 C 1.50696 * 109.46865 * 155.00158 * 12 11 10 16 16 H 1.07997 * 120.00579 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99887 * 179.97438 * 15 12 11 18 18 N 1.31517 * 120.00053 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00159 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47106 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47244 * 120.00229 * 19 17 15 22 22 H 1.48501 * 109.47100 * 240.00286 * 19 17 15 23 23 N 1.30041 * 107.63666 * 359.58668 * 9 8 7 24 24 O 1.21280 * 110.50119 * 0.25979 * 23 9 8 25 25 C 1.39684 * 119.82824 * 0.27234 * 6 5 4 26 26 C 1.37759 * 119.90398 * 359.44801 * 25 6 5 27 27 H 1.09004 * 109.47162 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47185 * 299.99723 * 1 2 3 30 30 H 1.08000 * 119.95635 * 359.95966 * 4 3 2 31 31 H 1.08002 * 120.04052 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47060 * 29.71543 * 10 9 8 33 33 H 1.09001 * 109.47380 * 149.71630 * 10 9 8 34 34 H 1.00899 * 111.00283 * 303.95218 * 11 10 9 35 35 H 1.08996 * 109.47268 * 180.02562 * 14 12 11 36 36 H 1.09003 * 109.47340 * 299.99821 * 14 12 11 37 37 H 1.08995 * 109.47731 * 59.99955 * 14 12 11 38 38 H 0.97002 * 119.99751 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.04516 * 179.72855 * 25 6 5 40 40 H 1.08005 * 119.95489 * 180.27394 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4330 1.2803 0.0005 5 6 4.0623 2.5059 0.0000 6 6 3.3033 3.6785 -0.0005 7 6 3.9737 4.9941 -0.0017 8 7 3.3877 6.1792 0.0041 9 6 4.3871 7.0745 -0.0029 10 6 4.2382 8.5742 -0.0035 11 7 4.1883 9.0607 -1.3887 12 6 4.0426 10.5219 -1.4285 13 1 4.5917 10.9646 -0.5975 14 6 2.5619 10.8900 -1.3152 15 6 4.5924 11.0463 -2.7299 16 1 5.0081 10.3625 -3.4552 17 6 4.5638 12.3990 -2.9953 18 7 4.0571 13.2317 -2.1124 19 14 5.2447 13.0490 -4.6088 20 1 5.7539 11.9164 -5.4232 21 1 4.1683 13.7503 -5.3536 22 1 6.3537 13.9969 -4.3320 23 7 5.5075 6.4144 -0.0034 24 8 5.2968 5.2200 -0.0026 25 6 1.9085 3.6033 0.0052 26 6 1.2869 2.3739 -0.0001 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0191 0.3732 0.0016 31 1 5.1410 2.5598 0.0000 32 1 3.3173 8.8481 0.5112 33 1 5.0885 9.0240 0.5091 34 1 5.0024 8.7640 -1.9058 35 1 2.4537 11.9742 -1.3451 36 1 2.0128 10.4474 -2.1462 37 1 2.1642 10.5108 -0.3739 38 1 4.0366 14.1833 -2.2993 39 1 1.3182 4.5077 0.0093 40 1 0.2085 2.3148 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:13 Heat of formation + Delta-G solvation = 61.387449 kcal Electronic energy + Delta-G solvation = -23137.397623 eV Core-core repulsion = 19535.137138 eV Total energy + Delta-G solvation = -3602.260485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.32198 -40.53587 -37.98913 -36.60697 -35.20835 -33.25304 -32.20927 -31.59975 -30.06194 -28.92277 -27.80025 -25.84827 -24.96839 -24.33703 -23.06723 -22.45634 -20.87493 -19.86857 -18.68008 -17.91353 -17.80556 -16.61299 -16.48172 -16.27082 -16.20307 -14.98998 -14.89170 -14.28932 -14.18401 -13.91936 -13.71950 -13.60477 -13.29509 -12.91608 -12.58899 -12.41369 -12.19004 -11.96427 -11.89229 -11.40504 -11.26551 -11.21008 -10.94234 -10.81831 -10.75825 -10.36333 -10.23857 -10.14829 -9.89214 -9.48068 -8.87167 -8.51575 -8.41608 -7.42955 -6.05771 -4.12218 0.34934 0.94075 1.66155 2.48122 2.72680 2.81877 3.28049 3.35765 3.39979 3.40741 3.73584 4.21544 4.37308 4.39871 4.45631 4.67948 4.71051 4.82276 4.97916 5.02157 5.06815 5.17506 5.25113 5.40796 5.60714 5.65208 5.80482 5.85048 5.92934 6.08326 6.10114 6.19659 6.25463 6.82748 6.87531 7.10325 7.16099 7.41338 7.74273 7.82485 8.20393 8.27344 8.35338 8.55009 8.96041 9.53645 11.00679 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026954 B = 0.002381 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.576668 B =11756.382957 C =12040.652741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.151 3.849 4 C -0.155 4.155 5 C -0.040 4.040 6 C -0.062 4.062 7 C 0.212 3.788 8 N -0.458 5.458 9 C 0.197 3.803 10 C 0.146 3.854 11 N -0.679 5.679 12 C 0.213 3.787 13 H 0.005 0.995 14 C -0.125 4.125 15 C -0.518 4.518 16 H 0.061 0.939 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 N -0.386 5.386 24 O 0.078 5.922 25 C -0.020 4.020 26 C -0.213 4.213 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.334 0.666 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.006 0.994 38 H 0.261 0.739 39 H 0.145 0.855 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 -25.850 6.850 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.104 3.896 4 C -0.173 4.173 5 C -0.060 4.060 6 C -0.064 4.064 7 C -0.005 4.005 8 N -0.192 5.192 9 C -0.076 4.076 10 C 0.015 3.985 11 N -0.312 5.312 12 C 0.106 3.894 13 H 0.023 0.977 14 C -0.184 4.184 15 C -0.557 4.557 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 N -0.093 5.093 24 O 0.019 5.981 25 C -0.040 4.040 26 C -0.231 4.231 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.151 0.849 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.162 0.838 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.924 -25.211 6.824 26.782 hybrid contribution 0.920 0.728 -0.630 1.331 sum -5.005 -24.483 6.195 25.745 Atomic orbital electron populations 1.23150 0.77830 1.04304 1.01836 1.86059 1.21890 1.26794 1.87900 1.19313 0.92455 0.84299 0.93534 1.20315 0.91263 0.98507 1.07258 1.21089 1.00500 0.90119 0.94301 1.17108 0.92634 0.85914 1.10749 1.26274 0.81236 0.95246 0.97741 1.72129 1.30432 0.97372 1.19264 1.25991 0.82793 1.00396 0.98455 1.20261 1.02358 0.81179 0.94694 1.60782 1.45823 1.16532 1.08110 1.19168 0.93995 0.79602 0.96627 0.97721 1.21726 0.96927 1.03077 0.96632 1.21248 1.39660 0.92276 1.02506 0.92116 1.24916 0.95208 0.96818 0.97054 1.69905 1.45205 1.03023 1.34623 0.86431 0.78624 0.78847 0.83447 1.19751 1.20902 1.21045 1.74631 1.24050 0.88814 1.21844 1.85355 1.26462 1.20125 1.66195 1.21063 0.92430 0.98283 0.92219 1.21200 1.00624 0.91572 1.09719 0.92188 0.87983 0.92238 0.84149 0.83895 0.88498 0.93122 0.84856 0.89885 0.94786 0.97494 0.92894 0.83764 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.40 10.49 -19.05 -0.20 -2.60 16 3 C 0.15 1.26 6.69 -39.06 -0.26 1.00 16 4 C -0.15 -1.23 9.97 -39.49 -0.39 -1.63 16 5 C -0.04 -0.35 9.72 -39.21 -0.38 -0.74 16 6 C -0.06 -0.69 5.87 -104.97 -0.62 -1.31 16 7 C 0.21 3.08 8.00 -13.87 -0.11 2.97 16 8 N -0.46 -7.88 11.26 -10.18 -0.11 -7.99 16 9 C 0.20 3.63 7.71 -156.57 -1.21 2.42 16 10 C 0.15 2.85 6.11 -4.97 -0.03 2.82 16 11 N -0.68 -15.30 6.29 -109.22 -0.69 -15.99 16 12 C 0.21 5.47 2.60 -68.87 -0.18 5.29 16 13 H 0.01 0.14 7.80 -51.93 -0.41 -0.26 16 14 C -0.13 -3.14 9.19 37.15 0.34 -2.80 16 15 C -0.52 -14.41 8.59 -34.44 -0.30 -14.70 16 16 H 0.06 1.68 7.62 -52.49 -0.40 1.28 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 N -0.39 -6.86 12.15 31.20 0.38 -6.48 16 24 O 0.08 1.20 11.13 16.59 0.18 1.38 16 25 C -0.02 -0.20 9.70 -39.22 -0.38 -0.58 16 26 C -0.21 -1.72 9.02 -39.50 -0.36 -2.08 16 27 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.14 1.01 7.94 -52.49 -0.42 0.60 16 32 H 0.10 1.85 7.44 -51.93 -0.39 1.46 16 33 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.33 7.56 8.22 -39.29 -0.32 7.24 16 35 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.14 1.49 7.87 -52.49 -0.41 1.07 16 40 H 0.14 0.80 6.28 -52.48 -0.33 0.47 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -31.42 344.47 -7.61 -39.03 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.99 Total: 2.41 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.98 Total: -6.61 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.20 Total: -55.25 kcal Atomic # 8 Polarization: -1.20 SS G_CDS: -0.02 Total: -1.22 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.42 -7.61 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.416 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds