Wall clock time and date at job start Tue Mar 31 2020 08:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35778 * 117.00031 * 2 1 4 4 C 1.38946 * 119.90968 * 179.97438 * 3 2 1 5 5 C 1.37764 * 120.08679 * 179.97438 * 4 3 2 6 6 C 1.39684 * 119.90820 * 0.02562 * 5 4 3 7 7 C 1.47660 * 120.08283 * 180.02562 * 6 5 4 8 8 N 1.32205 * 126.68365 * 180.34305 * 7 6 5 9 9 C 1.34190 * 105.53997 * 180.13771 * 8 7 6 10 10 C 1.50701 * 126.18371 * 179.84791 * 9 8 7 11 11 N 1.46901 * 109.46921 * 269.71362 * 10 9 8 12 12 C 1.46906 * 110.99793 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46871 * 35.00433 * 12 11 10 14 14 C 1.52994 * 109.47113 * 275.00325 * 12 11 10 15 15 C 1.50696 * 109.46865 * 155.00158 * 12 11 10 16 16 H 1.07997 * 120.00579 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99887 * 179.97438 * 15 12 11 18 18 N 1.31517 * 120.00053 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00159 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47106 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47244 * 120.00229 * 19 17 15 22 22 H 1.48501 * 109.47100 * 240.00286 * 19 17 15 23 23 N 1.30041 * 107.63666 * 359.58668 * 9 8 7 24 24 O 1.21280 * 110.50119 * 0.25979 * 23 9 8 25 25 C 1.39684 * 119.82824 * 0.27234 * 6 5 4 26 26 C 1.37759 * 119.90398 * 359.44801 * 25 6 5 27 27 H 1.09004 * 109.47162 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47185 * 299.99723 * 1 2 3 30 30 H 1.08000 * 119.95635 * 359.95966 * 4 3 2 31 31 H 1.08002 * 120.04052 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47060 * 29.71543 * 10 9 8 33 33 H 1.09001 * 109.47380 * 149.71630 * 10 9 8 34 34 H 1.00899 * 111.00283 * 303.95218 * 11 10 9 35 35 H 1.08996 * 109.47268 * 180.02562 * 14 12 11 36 36 H 1.09003 * 109.47340 * 299.99821 * 14 12 11 37 37 H 1.08995 * 109.47731 * 59.99955 * 14 12 11 38 38 H 0.97002 * 119.99751 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.04516 * 179.72855 * 25 6 5 40 40 H 1.08005 * 119.95489 * 180.27394 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4330 1.2803 0.0005 5 6 4.0623 2.5059 0.0000 6 6 3.3033 3.6785 -0.0005 7 6 3.9737 4.9941 -0.0017 8 7 3.3877 6.1792 0.0041 9 6 4.3871 7.0745 -0.0029 10 6 4.2382 8.5742 -0.0035 11 7 4.1883 9.0607 -1.3887 12 6 4.0426 10.5219 -1.4285 13 1 4.5917 10.9646 -0.5975 14 6 2.5619 10.8900 -1.3152 15 6 4.5924 11.0463 -2.7299 16 1 5.0081 10.3625 -3.4552 17 6 4.5638 12.3990 -2.9953 18 7 4.0571 13.2317 -2.1124 19 14 5.2447 13.0490 -4.6088 20 1 5.7539 11.9164 -5.4232 21 1 4.1683 13.7503 -5.3536 22 1 6.3537 13.9969 -4.3320 23 7 5.5075 6.4144 -0.0034 24 8 5.2968 5.2200 -0.0026 25 6 1.9085 3.6033 0.0052 26 6 1.2869 2.3739 -0.0001 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0191 0.3732 0.0016 31 1 5.1410 2.5598 0.0000 32 1 3.3173 8.8481 0.5112 33 1 5.0885 9.0240 0.5091 34 1 5.0024 8.7640 -1.9058 35 1 2.4537 11.9742 -1.3451 36 1 2.0128 10.4474 -2.1462 37 1 2.1642 10.5108 -0.3739 38 1 4.0366 14.1833 -2.2993 39 1 1.3182 4.5077 0.0093 40 1 0.2085 2.3148 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:12 Heat of formation + Delta-G solvation = 39.523889 kcal Electronic energy + Delta-G solvation = -23138.345698 eV Core-core repulsion = 19535.137138 eV Total energy + Delta-G solvation = -3603.208560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.61327 -41.15244 -38.64672 -38.28920 -36.71979 -34.80452 -33.80226 -32.27176 -31.16942 -30.55307 -28.26048 -27.68731 -26.88084 -25.41078 -23.99048 -23.37190 -22.05998 -21.75864 -19.40958 -19.20893 -18.98768 -18.38049 -17.50501 -17.04900 -16.96154 -16.68048 -16.06773 -15.64000 -15.55108 -15.26582 -14.76145 -14.49126 -14.29256 -14.07849 -13.97293 -13.57615 -13.40874 -13.24152 -12.90990 -12.84434 -12.78959 -12.68837 -12.37179 -12.25925 -12.21955 -12.12211 -11.97604 -11.82924 -11.20406 -10.94252 -10.61808 -10.14270 -9.29632 -9.18748 -8.17406 -6.31597 -0.56875 0.28454 0.55621 1.25905 1.39987 1.41633 1.53649 1.67110 2.28271 2.38393 2.51173 2.67301 2.90843 3.11336 3.62636 3.73859 3.79092 3.87891 4.09512 4.26893 4.29235 4.40323 4.44725 4.49373 4.53995 4.61020 4.77299 4.80428 4.91373 4.98417 5.05073 5.10011 5.13251 5.23234 5.34683 5.38859 5.54630 5.60571 5.77442 6.15726 6.28696 6.31796 6.57289 6.85741 7.09547 7.38166 8.88651 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026954 B = 0.002381 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.576668 B =11756.382957 C =12040.652741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.156 3.844 4 C -0.156 4.156 5 C -0.032 4.032 6 C -0.091 4.091 7 C 0.232 3.768 8 N -0.485 5.485 9 C 0.183 3.817 10 C 0.152 3.848 11 N -0.678 5.678 12 C 0.217 3.783 13 H -0.019 1.019 14 C -0.114 4.114 15 C -0.540 4.540 16 H 0.056 0.944 17 C 0.015 3.985 18 N -0.914 5.914 19 Si 0.965 3.035 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.278 1.278 23 N -0.401 5.401 24 O 0.086 5.914 25 C -0.025 4.025 26 C -0.210 4.210 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.332 0.668 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.136 0.864 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 -28.150 6.446 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.108 3.892 4 C -0.174 4.174 5 C -0.051 4.051 6 C -0.093 4.093 7 C 0.016 3.984 8 N -0.219 5.219 9 C -0.090 4.090 10 C 0.021 3.979 11 N -0.311 5.311 12 C 0.110 3.890 13 H -0.002 1.002 14 C -0.172 4.172 15 C -0.578 4.578 16 H 0.074 0.926 17 C -0.185 4.185 18 N -0.553 5.553 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.204 1.204 23 N -0.109 5.109 24 O 0.026 5.974 25 C -0.045 4.045 26 C -0.229 4.229 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.180 0.820 31 H 0.177 0.823 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.154 0.846 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.391 -27.529 6.430 28.983 hybrid contribution 0.958 1.192 -0.448 1.593 sum -5.433 -26.337 5.982 27.549 Atomic orbital electron populations 1.23459 0.75994 1.05998 1.02702 1.86065 1.23824 1.26288 1.87393 1.19514 0.92829 0.84688 0.92137 1.20584 0.91523 0.98875 1.06459 1.21261 1.01249 0.89532 0.93085 1.17267 0.93200 0.84992 1.13889 1.26844 0.80639 0.95828 0.95135 1.72094 1.30465 0.98121 1.21189 1.25699 0.83509 0.99947 0.99841 1.20124 1.02517 0.82337 0.92887 1.60676 1.45749 1.14557 1.10093 1.18986 0.93781 0.81230 0.95029 1.00191 1.21553 0.96648 1.01617 0.97390 1.21522 1.40256 0.92782 1.03268 0.92594 1.25716 0.95378 0.96999 1.00359 1.70014 1.45709 1.03352 1.36220 0.85404 0.78062 0.78162 0.79356 1.19423 1.20294 1.20416 1.74588 1.24160 0.89687 1.22441 1.85315 1.26919 1.19044 1.66125 1.21088 0.92043 0.98903 0.92487 1.21386 1.01846 0.90681 1.08945 0.91410 0.86053 0.91244 0.82009 0.82334 0.88256 0.93016 0.85122 0.91927 0.95376 0.95524 0.92617 0.84577 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.01 10.49 -91.07 -0.96 -4.96 16 3 C 0.16 2.19 6.69 22.61 0.15 2.35 16 4 C -0.16 -2.08 9.97 22.33 0.22 -1.85 16 5 C -0.03 -0.50 9.72 22.51 0.22 -0.28 16 6 C -0.09 -1.94 5.87 -20.09 -0.12 -2.06 16 7 C 0.23 6.66 8.00 87.24 0.70 7.36 16 8 N -0.49 -16.81 11.26 -302.70 -3.41 -20.22 16 9 C 0.18 6.84 7.71 138.53 1.07 7.90 16 10 C 0.15 6.05 6.11 85.56 0.52 6.58 16 11 N -0.68 -31.13 6.29 -499.45 -3.14 -34.27 16 12 C 0.22 11.41 2.60 44.16 0.11 11.52 16 13 H -0.02 -1.10 7.80 -2.39 -0.02 -1.12 16 14 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 15 C -0.54 -30.41 8.59 25.60 0.22 -30.19 16 16 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 17 C 0.02 0.85 5.30 84.65 0.45 1.30 16 18 N -0.91 -52.73 11.32 21.45 0.24 -52.49 16 19 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 N -0.40 -14.34 12.15 -58.55 -0.71 -15.05 16 24 O 0.09 2.62 11.13 69.44 0.77 3.40 16 25 C -0.03 -0.48 9.70 22.51 0.22 -0.27 16 26 C -0.21 -2.96 9.02 22.32 0.20 -2.76 16 27 H 0.07 0.28 7.65 -2.38 -0.02 0.26 16 28 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 29 H 0.07 0.26 7.65 -2.39 -0.02 0.24 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.16 1.91 7.94 -2.91 -0.02 1.88 16 32 H 0.10 3.85 7.44 -2.39 -0.02 3.83 16 33 H 0.05 2.04 8.06 -2.39 -0.02 2.02 16 34 H 0.33 15.35 8.22 -89.69 -0.74 14.62 16 35 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 1.19 7.45 -2.39 -0.02 1.18 16 38 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.14 2.78 7.87 -2.91 -0.02 2.76 16 40 H 0.16 1.43 6.28 -2.91 -0.02 1.41 16 Total: -1.00 -67.25 344.47 0.91 -66.35 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.34 Total: 15.49 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.74 Total: -4.35 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -7.02 Total: -122.03 kcal Atomic # 8 Polarization: -1.39 SS G_CDS: -0.18 Total: -1.57 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -67.25 0.91 -66.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.869 kcal (2) G-P(sol) polarization free energy of solvation -67.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds