Wall clock time and date at job start Tue Mar 31 2020 08:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33014 * 119.99838 * 2 1 4 4 C 1.47064 * 119.99502 * 172.85996 * 3 2 1 5 5 O 1.21632 * 120.00453 * 359.10086 * 4 3 2 6 6 N 1.34777 * 119.99722 * 179.09758 * 4 3 2 7 7 C 1.46501 * 120.00387 * 5.33652 * 6 4 3 8 8 C 1.50701 * 109.46684 * 270.00297 * 7 6 4 9 9 H 1.07993 * 120.00730 * 359.97438 * 8 7 6 10 10 C 1.37887 * 119.99580 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99744 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99948 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47083 * 90.00064 * 12 10 8 14 14 H 1.48499 * 109.47173 * 210.00240 * 12 10 8 15 15 H 1.48509 * 109.47367 * 330.00101 * 12 10 8 16 16 C 1.39939 * 119.99860 * 185.33656 * 6 4 3 17 17 C 1.38878 * 120.04925 * 58.65383 * 16 6 4 18 18 C 1.38107 * 119.95134 * 180.23182 * 17 16 6 19 19 C 1.38479 * 120.04697 * 359.51496 * 18 17 16 20 20 F 1.35104 * 119.94847 * 180.21260 * 19 18 17 21 21 C 1.38473 * 120.09690 * 0.45979 * 19 18 17 22 22 C 1.38107 * 120.04585 * 359.79185 * 21 19 18 23 23 C 1.50698 * 119.99779 * 180.02562 * 2 1 3 24 24 C 1.53003 * 117.49887 * 0.28702 * 23 2 1 25 25 C 1.53001 * 59.99972 * 252.51276 * 24 23 2 26 26 H 1.08997 * 109.46816 * 89.99357 * 1 2 3 27 27 H 1.09000 * 109.47084 * 209.99872 * 1 2 3 28 28 H 1.09002 * 109.46884 * 330.00327 * 1 2 3 29 29 H 1.07995 * 120.00572 * 352.86298 * 3 2 1 30 30 H 1.08997 * 109.46852 * 29.99900 * 7 6 4 31 31 H 1.09002 * 109.47415 * 149.99910 * 7 6 4 32 32 H 0.97005 * 120.00045 * 179.97438 * 11 10 8 33 33 H 1.07994 * 120.02014 * 359.94922 * 17 16 6 34 34 H 1.08001 * 119.97365 * 179.71771 * 18 17 16 35 35 H 1.07993 * 119.97729 * 179.77304 * 21 19 18 36 36 H 1.08003 * 120.02474 * 179.97438 * 22 21 19 37 37 H 1.09000 * 115.54910 * 146.00247 * 23 2 1 38 38 H 1.08998 * 117.50082 * 0.02562 * 24 23 2 39 39 H 1.09000 * 117.49527 * 145.02398 * 24 23 2 40 40 H 1.09004 * 117.49894 * 252.50672 * 25 24 23 41 41 H 1.09003 * 117.51397 * 107.48512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6342 1.1568 0.1583 5 8 4.2335 0.1087 0.3056 6 7 4.3101 2.3227 0.1401 7 6 3.5804 3.5917 0.0803 8 6 3.3689 3.9820 -1.3599 9 1 3.7411 3.3486 -2.1514 10 6 2.7000 5.1480 -1.6670 11 7 2.2463 5.9191 -0.7032 12 14 2.4385 5.6323 -3.4520 13 1 1.1561 5.0617 -3.9369 14 1 2.3947 7.1125 -3.5620 15 1 3.5568 5.1076 -4.2763 16 6 5.7089 2.3212 0.1783 17 6 6.4309 1.6631 -0.8088 18 6 7.8113 1.6589 -0.7665 19 6 8.4757 2.3186 0.2537 20 9 9.8263 2.3168 0.2908 21 6 7.7579 2.9759 1.2388 22 6 6.3773 2.9783 1.2031 23 6 2.2605 -1.3051 -0.0006 24 6 1.4384 -2.5955 -0.0080 25 6 2.1797 -2.1680 1.2603 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6385 2.0836 -0.1162 30 1 2.6141 3.4786 0.5717 31 1 4.1567 4.3665 0.5859 32 1 1.7761 6.7396 -0.9192 33 1 5.9131 1.1513 -1.6064 34 1 8.3730 1.1434 -1.5315 35 1 8.2780 3.4866 2.0355 36 1 5.8178 3.4906 1.9718 37 1 3.2016 -1.3044 -0.5505 38 1 0.3525 -2.5004 -0.0128 39 1 1.8385 -3.4440 -0.5630 40 1 3.0676 -2.7353 1.5397 41 1 1.5819 -1.7915 2.0904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732094138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:42 Heat of formation + Delta-G solvation = -8.206342 kcal Electronic energy + Delta-G solvation = -24451.054631 eV Core-core repulsion = 20825.856371 eV Total energy + Delta-G solvation = -3625.198260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.59571 -40.03449 -38.40162 -37.13609 -34.98630 -33.07751 -32.64533 -30.84133 -29.50982 -27.63765 -26.97745 -23.72139 -23.29130 -22.43624 -22.18067 -21.81887 -19.68544 -17.75457 -17.41399 -16.83865 -16.80247 -16.06023 -15.80905 -15.29994 -15.25585 -14.66065 -14.23875 -14.07182 -13.89600 -13.26303 -13.22252 -13.00208 -12.79158 -12.62366 -12.48791 -12.23409 -11.97890 -11.88744 -11.50311 -11.39011 -11.14285 -11.01366 -10.86608 -10.79139 -10.49326 -10.26358 -10.06850 -9.89644 -8.98510 -8.77010 -8.74051 -8.62120 -8.46629 -7.52338 -6.24766 -4.32181 1.41543 1.57754 1.82950 3.19281 3.26876 3.30385 3.67631 3.78852 4.00967 4.21412 4.30105 4.57560 4.83632 5.05322 5.08094 5.09443 5.12895 5.21860 5.30771 5.37638 5.58333 5.68025 5.70056 5.80388 5.83145 5.87668 5.92406 5.99947 6.15883 6.19373 6.27329 6.41875 6.48766 6.52949 6.69727 6.74439 6.84431 6.94002 7.07179 7.12248 7.57919 7.70320 7.95275 8.12653 8.71135 8.89950 9.35414 10.81911 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.006665 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.680891 B = 4200.135139 C = 6988.357305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.033 4.033 3 C -0.192 4.192 4 C 0.552 3.448 5 O -0.551 6.551 6 N -0.556 5.556 7 C 0.238 3.762 8 C -0.537 4.537 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.891 5.891 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.174 3.826 17 C -0.084 4.084 18 C -0.141 4.141 19 C 0.073 3.927 20 F -0.148 7.148 21 C -0.141 4.141 22 C -0.102 4.102 23 C -0.107 4.107 24 C -0.195 4.195 25 C -0.160 4.160 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -9.537 2.829 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.035 4.035 3 C -0.213 4.213 4 C 0.345 3.655 5 O -0.432 6.432 6 N -0.282 5.282 7 C 0.119 3.881 8 C -0.575 4.575 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.529 5.529 12 Si 0.724 3.276 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.081 3.919 17 C -0.104 4.104 18 C -0.161 4.161 19 C 0.053 3.947 20 F -0.127 7.127 21 C -0.160 4.160 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.231 4.231 25 C -0.197 4.197 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.162 0.838 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.321 -9.863 2.951 10.379 hybrid contribution 0.011 0.714 -1.068 1.285 sum 1.331 -9.149 1.883 9.435 Atomic orbital electron populations 1.20929 0.91502 1.02718 1.02702 1.21688 0.94968 0.93084 0.93748 1.22644 0.93345 0.99324 1.05960 1.18591 0.88319 0.82566 0.76043 1.90674 1.70906 1.31040 1.50614 1.45921 1.02945 1.09192 1.70112 1.19629 0.92105 0.78248 0.98078 1.21433 1.37152 1.07072 0.91863 0.91992 1.24912 0.95097 0.95881 0.97760 1.69913 1.37495 1.13608 1.31877 0.86502 0.78775 0.77740 0.84562 1.20399 1.21005 1.19747 1.17641 0.84107 0.96877 0.93228 1.21009 0.92680 0.99166 0.97528 1.20896 0.94586 1.01746 0.98848 1.17598 0.76492 1.02411 0.98154 1.91447 1.29437 1.95308 1.96497 1.20865 0.94078 1.01776 0.99295 1.21018 0.93275 1.00333 0.97583 1.21479 1.00412 0.87928 1.02663 1.23107 0.98840 0.98965 1.02227 1.22753 1.02276 1.03137 0.91514 0.90705 0.91427 0.90992 0.83777 0.93677 0.94211 0.92415 0.85308 0.85049 0.84917 0.84870 0.84878 0.88858 0.89091 0.88937 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.52 36.01 0.34 -1.16 16 2 C -0.03 -0.52 5.81 -101.16 -0.59 -1.10 16 3 C -0.19 -3.54 8.77 -37.82 -0.33 -3.87 16 4 C 0.55 11.23 7.37 -12.68 -0.09 11.13 16 5 O -0.55 -11.56 12.65 5.25 0.07 -11.49 16 6 N -0.56 -11.63 2.55 -116.05 -0.30 -11.92 16 7 C 0.24 5.48 4.69 -5.19 -0.02 5.46 16 8 C -0.54 -13.61 9.33 -34.44 -0.32 -13.93 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 12 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 C 0.17 3.42 5.09 -83.68 -0.43 2.99 16 17 C -0.08 -1.54 9.05 -39.39 -0.36 -1.89 16 18 C -0.14 -2.28 10.02 -39.54 -0.40 -2.67 16 19 C 0.07 1.17 7.30 -39.41 -0.29 0.88 16 20 F -0.15 -2.30 17.27 2.25 0.04 -2.26 16 21 C -0.14 -2.19 10.02 -39.54 -0.40 -2.59 16 22 C -0.10 -1.78 9.34 -39.39 -0.37 -2.15 16 23 C -0.11 -1.63 4.36 -91.77 -0.40 -2.03 16 24 C -0.19 -2.34 9.80 -26.73 -0.26 -2.60 16 25 C -0.16 -2.13 10.23 -26.73 -0.27 -2.41 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.71 6.31 -51.93 -0.33 0.38 16 28 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.14 2.79 6.33 -52.49 -0.33 2.46 16 30 H 0.05 1.06 6.33 -51.93 -0.33 0.73 16 31 H 0.04 0.96 7.47 -51.93 -0.39 0.58 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.13 2.17 7.92 -52.48 -0.42 1.76 16 37 H 0.13 2.35 6.17 -51.93 -0.32 2.03 16 38 H 0.09 0.99 6.27 -51.93 -0.33 0.66 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -27.57 350.51 -8.83 -36.40 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.36 Total: 6.22 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -4.28 Total: -14.32 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.44 Total: -35.06 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.57 -8.83 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.195 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds