Wall clock time and date at job start Tue Mar 31 2020 08:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33014 * 119.99838 * 2 1 4 4 C 1.47064 * 119.99502 * 172.85996 * 3 2 1 5 5 O 1.21632 * 120.00453 * 359.10086 * 4 3 2 6 6 N 1.34777 * 119.99722 * 179.09758 * 4 3 2 7 7 C 1.46501 * 120.00387 * 5.33652 * 6 4 3 8 8 C 1.50701 * 109.46684 * 270.00297 * 7 6 4 9 9 H 1.07993 * 120.00730 * 359.97438 * 8 7 6 10 10 C 1.37887 * 119.99580 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99744 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99948 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47083 * 90.00064 * 12 10 8 14 14 H 1.48499 * 109.47173 * 210.00240 * 12 10 8 15 15 H 1.48509 * 109.47367 * 330.00101 * 12 10 8 16 16 C 1.39939 * 119.99860 * 185.33656 * 6 4 3 17 17 C 1.38878 * 120.04925 * 58.65383 * 16 6 4 18 18 C 1.38107 * 119.95134 * 180.23182 * 17 16 6 19 19 C 1.38479 * 120.04697 * 359.51496 * 18 17 16 20 20 F 1.35104 * 119.94847 * 180.21260 * 19 18 17 21 21 C 1.38473 * 120.09690 * 0.45979 * 19 18 17 22 22 C 1.38107 * 120.04585 * 359.79185 * 21 19 18 23 23 C 1.50698 * 119.99779 * 180.02562 * 2 1 3 24 24 C 1.53003 * 117.49887 * 0.28702 * 23 2 1 25 25 C 1.53001 * 59.99972 * 252.51276 * 24 23 2 26 26 H 1.08997 * 109.46816 * 89.99357 * 1 2 3 27 27 H 1.09000 * 109.47084 * 209.99872 * 1 2 3 28 28 H 1.09002 * 109.46884 * 330.00327 * 1 2 3 29 29 H 1.07995 * 120.00572 * 352.86298 * 3 2 1 30 30 H 1.08997 * 109.46852 * 29.99900 * 7 6 4 31 31 H 1.09002 * 109.47415 * 149.99910 * 7 6 4 32 32 H 0.97005 * 120.00045 * 179.97438 * 11 10 8 33 33 H 1.07994 * 120.02014 * 359.94922 * 17 16 6 34 34 H 1.08001 * 119.97365 * 179.71771 * 18 17 16 35 35 H 1.07993 * 119.97729 * 179.77304 * 21 19 18 36 36 H 1.08003 * 120.02474 * 179.97438 * 22 21 19 37 37 H 1.09000 * 115.54910 * 146.00247 * 23 2 1 38 38 H 1.08998 * 117.50082 * 0.02562 * 24 23 2 39 39 H 1.09000 * 117.49527 * 145.02398 * 24 23 2 40 40 H 1.09004 * 117.49894 * 252.50672 * 25 24 23 41 41 H 1.09003 * 117.51397 * 107.48512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6342 1.1568 0.1583 5 8 4.2335 0.1087 0.3056 6 7 4.3101 2.3227 0.1401 7 6 3.5804 3.5917 0.0803 8 6 3.3689 3.9820 -1.3599 9 1 3.7411 3.3486 -2.1514 10 6 2.7000 5.1480 -1.6670 11 7 2.2463 5.9191 -0.7032 12 14 2.4385 5.6323 -3.4520 13 1 1.1561 5.0617 -3.9369 14 1 2.3947 7.1125 -3.5620 15 1 3.5568 5.1076 -4.2763 16 6 5.7089 2.3212 0.1783 17 6 6.4309 1.6631 -0.8088 18 6 7.8113 1.6589 -0.7665 19 6 8.4757 2.3186 0.2537 20 9 9.8263 2.3168 0.2908 21 6 7.7579 2.9759 1.2388 22 6 6.3773 2.9783 1.2031 23 6 2.2605 -1.3051 -0.0006 24 6 1.4384 -2.5955 -0.0080 25 6 2.1797 -2.1680 1.2603 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6385 2.0836 -0.1162 30 1 2.6141 3.4786 0.5717 31 1 4.1567 4.3665 0.5859 32 1 1.7761 6.7396 -0.9192 33 1 5.9131 1.1513 -1.6064 34 1 8.3730 1.1434 -1.5315 35 1 8.2780 3.4866 2.0355 36 1 5.8178 3.4906 1.9718 37 1 3.2016 -1.3044 -0.5505 38 1 0.3525 -2.5004 -0.0128 39 1 1.8385 -3.4440 -0.5630 40 1 3.0676 -2.7353 1.5397 41 1 1.5819 -1.7915 2.0904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732094138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:42 Heat of formation + Delta-G solvation = -19.546531 kcal Electronic energy + Delta-G solvation = -24451.546378 eV Core-core repulsion = 20825.856371 eV Total energy + Delta-G solvation = -3625.690007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.87119 -41.52466 -39.71111 -38.40493 -36.63056 -34.59389 -34.25337 -32.18128 -30.96071 -29.16483 -28.47951 -25.26745 -24.79903 -23.88090 -23.30750 -23.03129 -21.06850 -19.11329 -18.78033 -18.66088 -18.29643 -17.62111 -17.22246 -16.55680 -16.51243 -16.35187 -15.60852 -15.56132 -15.29104 -14.56595 -14.50806 -14.26718 -14.21798 -14.02725 -13.94191 -13.66616 -13.40566 -13.22974 -13.10266 -12.89047 -12.63074 -12.45475 -12.19515 -12.14625 -12.10670 -11.77157 -11.60782 -11.23788 -10.65460 -10.39922 -10.27067 -10.10941 -9.77366 -9.05694 -8.21961 -6.36746 0.03347 0.23765 0.47308 1.39518 1.41794 1.50966 2.15950 2.31338 2.40911 2.62754 3.07902 3.10282 3.25073 3.67055 3.75079 3.84546 3.89436 4.06855 4.19747 4.23003 4.30438 4.38458 4.46885 4.54876 4.69022 4.76791 4.83141 4.88146 4.95224 4.99275 5.07141 5.09909 5.12498 5.13137 5.28222 5.31222 5.40038 5.56660 5.61502 5.69281 5.71743 6.01012 6.07688 6.47046 6.75232 7.28279 7.38096 8.83043 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.006665 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.680891 B = 4200.135139 C = 6988.357305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.001 4.001 3 C -0.236 4.236 4 C 0.546 3.454 5 O -0.565 6.565 6 N -0.561 5.561 7 C 0.256 3.744 8 C -0.543 4.543 9 H 0.049 0.951 10 C 0.026 3.974 11 N -0.918 5.918 12 Si 0.954 3.046 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.275 1.275 16 C 0.140 3.860 17 C -0.099 4.099 18 C -0.135 4.135 19 C 0.074 3.926 20 F -0.141 7.141 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.158 4.158 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.269 0.731 33 H 0.119 0.881 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -10.731 2.583 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.003 4.003 3 C -0.257 4.257 4 C 0.341 3.659 5 O -0.448 6.448 6 N -0.287 5.287 7 C 0.136 3.864 8 C -0.582 4.582 9 H 0.067 0.933 10 C -0.175 4.175 11 N -0.557 5.557 12 Si 0.779 3.221 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.200 1.200 16 C 0.048 3.952 17 C -0.119 4.119 18 C -0.154 4.154 19 C 0.055 3.945 20 F -0.120 7.120 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.160 4.160 24 C -0.198 4.198 25 C -0.195 4.195 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.958 -11.067 2.707 11.434 hybrid contribution 0.179 0.971 -0.959 1.377 sum 1.137 -10.096 1.748 10.309 Atomic orbital electron populations 1.21059 0.88634 1.04199 1.04007 1.22143 0.96863 0.92357 0.88891 1.22448 0.92389 0.99852 1.10986 1.18937 0.89134 0.82221 0.75601 1.90649 1.71402 1.31107 1.51609 1.45828 1.03654 1.08514 1.70658 1.19221 0.91599 0.78904 0.96656 1.21570 1.37002 1.07024 0.92582 0.93281 1.25582 0.94844 0.95825 1.01264 1.69994 1.38150 1.14005 1.33516 0.85613 0.78731 0.77495 0.80239 1.19511 1.20482 1.19992 1.18033 0.83722 0.98695 0.94759 1.21010 0.93722 0.99821 0.97385 1.21114 0.93703 1.01203 0.99394 1.17664 0.76801 1.02043 0.98032 1.91470 1.28835 1.95216 1.96440 1.21154 0.93238 1.00828 0.99699 1.21153 0.94276 1.00369 0.97369 1.21367 1.00618 0.89266 1.04769 1.23229 0.99729 0.96661 1.00213 1.22830 1.02815 1.02223 0.91682 0.89204 0.88671 0.90801 0.85419 0.94568 0.95819 0.92190 0.86329 0.82447 0.81768 0.84419 0.87816 0.86501 0.87737 0.89085 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.52 71.24 0.68 -2.08 16 2 C 0.00 -0.02 5.81 -17.61 -0.10 -0.12 16 3 C -0.24 -9.09 8.77 23.42 0.21 -8.89 16 4 C 0.55 23.46 7.37 86.56 0.64 24.10 16 5 O -0.57 -24.84 12.65 -4.13 -0.05 -24.89 16 6 N -0.56 -24.75 2.55 -639.30 -1.63 -26.38 16 7 C 0.26 12.43 4.69 85.63 0.40 12.83 16 8 C -0.54 -28.56 9.33 25.60 0.24 -28.32 16 9 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 10 C 0.03 1.34 5.46 84.66 0.46 1.80 16 11 N -0.92 -50.04 13.29 21.45 0.28 -49.75 16 12 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 14 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 16 C 0.14 5.70 5.09 38.15 0.19 5.90 16 17 C -0.10 -3.75 9.05 22.39 0.20 -3.55 16 18 C -0.14 -4.26 10.02 22.30 0.22 -4.03 16 19 C 0.07 2.26 7.30 22.38 0.16 2.43 16 20 F -0.14 -4.05 17.27 44.97 0.78 -3.27 16 21 C -0.13 -3.89 10.02 22.29 0.22 -3.67 16 22 C -0.11 -3.96 9.34 22.39 0.21 -3.75 16 23 C -0.14 -4.25 4.36 -11.54 -0.05 -4.30 16 24 C -0.16 -3.40 9.80 30.60 0.30 -3.10 16 25 C -0.16 -3.96 10.23 30.60 0.31 -3.65 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.09 1.63 6.31 -2.39 -0.02 1.61 16 28 H 0.07 1.67 8.07 -2.39 -0.02 1.65 16 29 H 0.13 5.26 6.33 -2.91 -0.02 5.24 16 30 H 0.04 1.81 6.33 -2.39 -0.02 1.79 16 31 H 0.02 1.21 7.47 -2.39 -0.02 1.19 16 32 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.14 4.63 7.92 -2.91 -0.02 4.60 16 37 H 0.10 3.78 6.17 -2.39 -0.01 3.76 16 38 H 0.12 1.93 6.27 -2.39 -0.01 1.92 16 39 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -60.80 350.51 6.75 -54.05 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 1.04 Total: 24.81 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 4.30 Total: -18.40 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.35 Total: -76.14 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -60.80 6.75 -54.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.503 kcal (2) G-P(sol) polarization free energy of solvation -60.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds