Wall clock time and date at job start Tue Mar 31 2020 08:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46896 * 110.99955 * 183.95614 * 12 2 1 14 14 C 1.46897 * 111.00012 * 59.99745 * 12 2 1 15 15 N 1.46503 * 109.47166 * 190.00460 * 14 12 2 16 16 N 1.39837 * 125.40841 * 90.02398 * 15 14 12 17 17 C 1.30199 * 110.12916 * 180.02562 * 16 15 14 18 18 C 1.46061 * 107.70212 * 359.97438 * 17 16 15 19 19 C 1.39565 * 133.88413 * 179.97438 * 18 17 16 20 20 C 1.39011 * 119.40200 * 179.23326 * 19 18 17 21 21 C 1.47554 * 119.92581 * 180.21525 * 20 19 18 22 22 O 1.21496 * 119.99928 * 0.43874 * 21 20 19 23 23 O 1.34733 * 120.00006 * 180.43764 * 21 20 19 24 24 C 1.40386 * 120.14927 * 0.65428 * 20 19 18 25 25 C 1.36159 * 120.66379 * 359.61083 * 24 20 19 26 26 C 1.36790 * 125.40458 * 269.72227 * 15 14 12 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47833 * 59.99499 * 13 12 2 32 32 H 1.09009 * 109.46755 * 180.02562 * 13 12 2 33 33 H 1.09001 * 109.47104 * 299.98879 * 13 12 2 34 34 H 1.09009 * 109.46998 * 310.00024 * 14 12 2 35 35 H 1.09000 * 109.47347 * 70.00169 * 14 12 2 36 36 H 1.08000 * 126.14962 * 180.02562 * 17 16 15 37 37 H 1.08003 * 120.29769 * 0.02562 * 19 18 17 38 38 H 0.96697 * 116.99701 * 180.02562 * 23 21 20 39 39 H 1.07996 * 119.66936 * 179.57854 * 24 20 19 40 40 H 1.08007 * 119.89963 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 7 1.8493 -0.8668 -3.5827 16 7 1.0039 -1.8450 -4.1155 17 6 1.5664 -2.4115 -5.1440 18 6 2.8743 -1.7896 -5.3335 19 6 3.9095 -1.9740 -6.2511 20 6 5.0497 -1.1838 -6.1618 21 6 6.1491 -1.3658 -7.1289 22 8 6.0539 -2.2001 -8.0069 23 8 7.2586 -0.6067 -7.0382 24 6 5.1613 -0.2192 -5.1478 25 6 4.1564 -0.0393 -4.2469 26 6 2.9992 -0.8154 -4.3218 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 3.8030 -1.3531 -0.3068 32 1 3.8209 -1.3108 -2.0865 33 1 3.9187 0.2052 -1.1592 34 1 0.4721 0.1325 -2.3564 35 1 2.0518 0.9348 -2.5280 36 1 1.1419 -3.1991 -5.7489 37 1 3.8202 -2.7153 -7.0316 38 1 7.9516 -0.7621 -7.6945 39 1 6.0534 0.3858 -5.0815 40 1 4.2552 0.7066 -3.4720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736541044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:50 Heat of formation + Delta-G solvation = 16.505707 kcal Electronic energy + Delta-G solvation = -24283.797039 eV Core-core repulsion = 20679.590336 eV Total energy + Delta-G solvation = -3604.206703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42766 -40.18647 -37.44304 -36.84232 -36.20663 -33.48443 -32.16220 -30.39731 -30.20877 -29.21757 -26.90200 -24.93201 -24.39019 -23.45755 -22.82946 -21.21051 -20.71915 -19.56341 -18.37723 -17.51605 -17.27012 -16.30908 -15.91307 -15.75775 -15.54139 -15.00482 -14.79771 -14.45704 -14.04958 -13.85742 -13.66448 -13.42299 -13.01119 -12.74702 -12.56401 -12.15793 -12.01288 -11.66984 -11.38754 -11.28259 -11.14689 -10.92402 -10.85417 -10.78953 -10.68886 -10.36263 -10.24291 -10.14523 -10.02647 -9.07745 -8.85167 -8.56603 -8.04827 -7.48727 -6.13669 -4.18996 0.65093 0.94636 2.36784 2.46914 2.55808 2.88211 3.23816 3.31081 3.35378 3.66473 4.29281 4.35407 4.50653 4.66699 4.81702 4.88472 4.95492 5.11747 5.19197 5.33540 5.43355 5.62027 5.64760 5.78245 5.94105 6.10580 6.13444 6.14251 6.28731 6.37002 6.55203 6.57562 6.62818 6.86059 6.89354 6.97728 7.31289 7.44219 7.66695 7.70342 7.73969 7.97129 8.12775 8.35271 8.85822 9.46654 10.93040 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.003300 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.999062 B = 8482.548126 C = 9155.750153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.219 3.781 3 H 0.004 0.996 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.547 5.547 13 C 0.033 3.967 14 C 0.293 3.707 15 N -0.375 5.375 16 N -0.229 5.229 17 C 0.072 3.928 18 C -0.201 4.201 19 C 0.041 3.959 20 C -0.184 4.184 21 C 0.535 3.465 22 O -0.526 6.526 23 O -0.514 6.514 24 C -0.025 4.025 25 C -0.148 4.148 26 C 0.166 3.834 27 H 0.090 0.910 28 H 0.039 0.961 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.198 0.802 37 H 0.142 0.858 38 H 0.412 0.588 39 H 0.141 0.859 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 -0.841 -17.081 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.114 3.886 3 H 0.022 0.978 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.273 5.273 13 C -0.115 4.115 14 C 0.083 3.917 15 N -0.161 5.161 16 N -0.040 5.040 17 C -0.126 4.126 18 C -0.209 4.209 19 C 0.020 3.980 20 C -0.187 4.187 21 C 0.381 3.619 22 O -0.416 6.416 23 O -0.325 6.325 24 C -0.046 4.046 25 C -0.170 4.170 26 C 0.046 3.954 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.215 0.785 37 H 0.160 0.840 38 H 0.270 0.730 39 H 0.159 0.841 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.541 -1.195 -15.901 16.881 hybrid contribution 1.785 0.242 0.066 1.802 sum 7.326 -0.953 -15.835 17.473 Atomic orbital electron populations 1.21917 0.97334 1.00172 1.00079 1.19266 0.92527 0.91998 0.84814 0.97849 1.21072 1.31498 1.12518 0.89431 0.91751 1.24915 0.95010 0.95041 0.99076 1.69871 1.36581 1.22911 1.23714 0.86474 0.78486 0.80101 0.82259 1.20682 1.21137 1.19792 1.62066 1.10152 1.53273 1.01836 1.22343 0.88006 0.99373 1.01803 1.22268 1.02638 0.87043 0.79759 1.48867 1.11151 1.31029 1.25085 1.76731 1.17196 1.00704 1.09382 1.25140 0.91621 0.99969 0.95863 1.19820 0.97543 1.02661 1.00906 1.20649 0.88788 0.94086 0.94463 1.18571 0.94904 1.04775 1.00448 1.20758 0.81268 0.77182 0.82654 1.90877 1.80577 1.34630 1.35538 1.84569 1.28660 1.61161 1.58138 1.20808 0.97836 0.94760 0.91205 1.19859 0.91981 1.02570 1.02580 1.19134 0.88981 0.95531 0.91733 0.89171 0.94209 0.97359 0.92780 0.90013 0.93706 0.96517 0.87043 0.92393 0.78504 0.84043 0.73001 0.84096 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.76 37.16 0.33 -2.86 16 2 C 0.22 5.23 2.06 -68.86 -0.14 5.08 16 3 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 4 C -0.51 -13.33 7.93 -34.44 -0.27 -13.61 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.38 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.55 -11.33 4.76 -240.19 -1.14 -12.47 16 13 C 0.03 0.63 8.50 60.06 0.51 1.14 16 14 C 0.29 5.16 5.92 -63.32 -0.37 4.79 16 15 N -0.38 -6.19 3.59 -61.64 -0.22 -6.42 16 16 N -0.23 -3.71 12.39 31.89 0.40 -3.32 16 17 C 0.07 0.92 12.29 -15.11 -0.19 0.73 16 18 C -0.20 -2.65 6.35 -105.22 -0.67 -3.32 16 19 C 0.04 0.48 9.65 -38.80 -0.37 0.10 16 20 C -0.18 -2.12 5.87 -105.00 -0.62 -2.73 16 21 C 0.54 5.91 8.26 34.53 0.29 6.20 16 22 O -0.53 -7.06 17.11 -19.26 -0.33 -7.39 16 23 O -0.51 -4.10 12.65 -40.58 -0.51 -4.62 16 24 C -0.03 -0.28 9.53 -39.52 -0.38 -0.65 16 25 C -0.15 -1.86 8.65 -39.84 -0.34 -2.21 16 26 C 0.17 2.42 5.49 -84.12 -0.46 1.96 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.01 0.16 6.20 -51.93 -0.32 -0.17 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.08 1.68 6.23 -51.93 -0.32 1.36 16 32 H 0.04 0.79 5.53 -51.92 -0.29 0.50 16 33 H 0.02 0.30 8.11 -51.93 -0.42 -0.12 16 34 H 0.11 2.00 5.83 -51.92 -0.30 1.69 16 35 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.14 1.43 7.63 -52.48 -0.40 1.03 16 38 H 0.41 1.42 9.11 45.56 0.42 1.83 16 39 H 0.14 1.25 7.58 -52.49 -0.40 0.85 16 40 H 0.13 1.57 7.84 -52.48 -0.41 1.16 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -31.32 334.51 -7.88 -39.20 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.92 Total: 1.86 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.79 Total: -3.84 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.34 Total: -45.99 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.84 Total: -12.00 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.32 -7.88 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736541044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.706 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds