Wall clock time and date at job start Tue Mar 31 2020 08:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46896 * 110.99955 * 183.95614 * 12 2 1 14 14 C 1.46897 * 111.00012 * 59.99745 * 12 2 1 15 15 N 1.46503 * 109.47166 * 190.00460 * 14 12 2 16 16 N 1.39837 * 125.40841 * 90.02398 * 15 14 12 17 17 C 1.30199 * 110.12916 * 180.02562 * 16 15 14 18 18 C 1.46061 * 107.70212 * 359.97438 * 17 16 15 19 19 C 1.39565 * 133.88413 * 179.97438 * 18 17 16 20 20 C 1.39011 * 119.40200 * 179.23326 * 19 18 17 21 21 C 1.47554 * 119.92581 * 180.21525 * 20 19 18 22 22 O 1.21496 * 119.99928 * 0.43874 * 21 20 19 23 23 O 1.34733 * 120.00006 * 180.43764 * 21 20 19 24 24 C 1.40386 * 120.14927 * 0.65428 * 20 19 18 25 25 C 1.36159 * 120.66379 * 359.61083 * 24 20 19 26 26 C 1.36790 * 125.40458 * 269.72227 * 15 14 12 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47833 * 59.99499 * 13 12 2 32 32 H 1.09009 * 109.46755 * 180.02562 * 13 12 2 33 33 H 1.09001 * 109.47104 * 299.98879 * 13 12 2 34 34 H 1.09009 * 109.46998 * 310.00024 * 14 12 2 35 35 H 1.09000 * 109.47347 * 70.00169 * 14 12 2 36 36 H 1.08000 * 126.14962 * 180.02562 * 17 16 15 37 37 H 1.08003 * 120.29769 * 0.02562 * 19 18 17 38 38 H 0.96697 * 116.99701 * 180.02562 * 23 21 20 39 39 H 1.07996 * 119.66936 * 179.57854 * 24 20 19 40 40 H 1.08007 * 119.89963 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 7 1.8493 -0.8668 -3.5827 16 7 1.0039 -1.8450 -4.1155 17 6 1.5664 -2.4115 -5.1440 18 6 2.8743 -1.7896 -5.3335 19 6 3.9095 -1.9740 -6.2511 20 6 5.0497 -1.1838 -6.1618 21 6 6.1491 -1.3658 -7.1289 22 8 6.0539 -2.2001 -8.0069 23 8 7.2586 -0.6067 -7.0382 24 6 5.1613 -0.2192 -5.1478 25 6 4.1564 -0.0393 -4.2469 26 6 2.9992 -0.8154 -4.3218 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 3.8030 -1.3531 -0.3068 32 1 3.8209 -1.3108 -2.0865 33 1 3.9187 0.2052 -1.1592 34 1 0.4721 0.1325 -2.3564 35 1 2.0518 0.9348 -2.5280 36 1 1.1419 -3.1991 -5.7489 37 1 3.8202 -2.7153 -7.0316 38 1 7.9516 -0.7621 -7.6945 39 1 6.0534 0.3858 -5.0815 40 1 4.2552 0.7066 -3.4720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736541044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:49 Heat of formation + Delta-G solvation = -4.298657 kcal Electronic energy + Delta-G solvation = -24284.699184 eV Core-core repulsion = 20679.590336 eV Total energy + Delta-G solvation = -3605.108848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.45823 -41.03980 -38.92089 -37.92226 -36.99870 -35.16916 -33.56976 -31.50116 -31.24712 -30.94201 -28.39156 -26.65898 -25.52027 -24.89942 -23.79446 -22.15610 -22.07340 -21.05575 -19.24197 -18.71371 -18.31040 -17.95554 -17.35303 -16.74801 -16.60178 -16.41203 -16.00902 -15.79558 -15.32546 -15.04134 -14.92568 -14.49795 -14.36952 -14.15580 -13.79817 -13.71738 -13.15492 -12.98895 -12.84034 -12.68275 -12.64686 -12.47158 -12.24364 -12.17627 -12.05672 -11.93695 -11.77264 -11.67355 -11.27565 -10.97542 -10.55758 -9.84878 -9.25427 -8.99090 -8.15409 -6.27240 -0.26752 -0.02097 1.26290 1.40511 1.42875 1.49404 1.52616 1.60597 2.13632 2.39927 2.73078 3.11805 3.19108 3.41538 3.51553 3.68781 3.98943 4.11069 4.13968 4.15805 4.25952 4.39337 4.53148 4.57568 4.74201 4.81174 4.87764 4.92372 4.95841 5.14011 5.21258 5.23233 5.37925 5.42784 5.60319 5.64345 5.64438 5.68215 5.87476 6.15558 6.25311 6.53009 6.63850 6.84070 7.05046 7.41818 8.90067 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.003300 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.999062 B = 8482.548126 C = 9155.750153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.226 3.774 3 H -0.019 1.019 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.560 5.560 13 C 0.044 3.956 14 C 0.302 3.698 15 N -0.394 5.394 16 N -0.276 5.276 17 C 0.092 3.908 18 C -0.210 4.210 19 C 0.046 3.954 20 C -0.190 4.190 21 C 0.544 3.456 22 O -0.552 6.552 23 O -0.505 6.505 24 C -0.009 4.009 25 C -0.161 4.161 26 C 0.148 3.852 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.239 0.761 37 H 0.158 0.842 38 H 0.433 0.567 39 H 0.165 0.835 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 -1.333 -18.577 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.120 3.880 3 H -0.002 1.002 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.287 5.287 13 C -0.104 4.104 14 C 0.091 3.909 15 N -0.180 5.180 16 N -0.086 5.086 17 C -0.106 4.106 18 C -0.218 4.218 19 C 0.026 3.974 20 C -0.193 4.193 21 C 0.390 3.610 22 O -0.445 6.445 23 O -0.319 6.319 24 C -0.030 4.030 25 C -0.183 4.183 26 C 0.030 3.970 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.255 0.745 37 H 0.176 0.824 38 H 0.295 0.705 39 H 0.183 0.817 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.083 -1.680 -17.431 18.890 hybrid contribution 1.442 0.389 0.351 1.534 sum 8.525 -1.291 -17.080 19.133 Atomic orbital electron populations 1.21725 0.97111 0.99308 1.00145 1.19000 0.92626 0.90681 0.85717 1.00164 1.21332 1.31487 1.12398 0.90803 0.92600 1.25623 0.95217 0.95704 1.01658 1.69980 1.37356 1.23929 1.24264 0.85555 0.78147 0.78905 0.79022 1.19958 1.20822 1.19811 1.61938 1.11044 1.53613 1.02055 1.22217 0.87228 0.99588 1.01415 1.22045 1.02091 0.87665 0.79090 1.48609 1.12202 1.31943 1.25261 1.76694 1.18485 1.02101 1.11350 1.25873 0.91013 0.99228 0.94498 1.20003 0.98171 1.02616 1.01041 1.20829 0.88265 0.94157 0.94197 1.18779 0.95204 1.04656 1.00637 1.20579 0.81665 0.76837 0.81881 1.90876 1.81222 1.35857 1.36543 1.84515 1.28402 1.60072 1.58863 1.21046 0.97900 0.94115 0.89940 1.19997 0.91955 1.02909 1.03470 1.19493 0.88997 0.96483 0.92056 0.91513 0.95354 0.94834 0.92733 0.92096 0.92262 0.95784 0.87896 0.91151 0.74532 0.82420 0.70486 0.81728 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.76 71.98 0.63 -5.29 16 2 C 0.23 11.02 2.06 44.17 0.09 11.12 16 3 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 4 C -0.52 -27.97 7.93 25.60 0.20 -27.77 16 5 H 0.06 3.03 6.39 -2.91 -0.02 3.01 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -50.89 11.32 21.45 0.24 -50.65 16 8 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.56 -23.48 4.76 -913.83 -4.35 -27.83 16 13 C 0.04 1.66 8.50 127.69 1.09 2.75 16 14 C 0.30 10.68 5.92 170.81 1.01 11.69 16 15 N -0.39 -12.85 3.59 -348.93 -1.25 -14.10 16 16 N -0.28 -8.78 12.39 -53.01 -0.66 -9.43 16 17 C 0.09 2.17 12.29 86.96 1.07 3.24 16 18 C -0.21 -5.15 6.35 -20.25 -0.13 -5.28 16 19 C 0.05 0.96 9.65 22.78 0.22 1.18 16 20 C -0.19 -3.87 5.87 -20.11 -0.12 -3.99 16 21 C 0.54 10.46 8.26 70.28 0.58 11.04 16 22 O -0.55 -13.50 17.11 19.85 0.34 -13.16 16 23 O -0.50 -6.34 12.65 -56.43 -0.71 -7.06 16 24 C -0.01 -0.18 9.53 22.31 0.21 0.03 16 25 C -0.16 -3.81 8.65 22.10 0.19 -3.62 16 26 C 0.15 4.15 5.49 39.36 0.22 4.37 16 27 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.03 1.37 6.20 -2.38 -0.01 1.36 16 30 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.06 2.55 6.23 -2.39 -0.01 2.53 16 32 H 0.06 2.06 5.53 -2.38 -0.01 2.05 16 33 H 0.02 0.86 8.11 -2.39 -0.02 0.84 16 34 H 0.10 3.74 5.83 -2.38 -0.01 3.72 16 35 H 0.07 2.27 8.09 -2.39 -0.02 2.26 16 36 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.16 2.74 7.63 -2.91 -0.02 2.72 16 38 H 0.43 1.49 9.11 -74.06 -0.67 0.81 16 39 H 0.17 2.36 7.58 -2.91 -0.02 2.34 16 40 H 0.14 3.04 7.84 -2.91 -0.02 3.02 16 Total: -1.00 -67.79 334.51 1.76 -66.03 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.42 Total: 10.50 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.71 Total: 0.84 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -6.02 Total: -102.01 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.37 Total: -20.22 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.79 1.76 -66.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736541044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.727 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds