Wall clock time and date at job start Tue Mar 31 2020 08:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.46499 * 120.00065 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47138 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00043 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00213 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00201 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47001 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47188 * 120.00103 * 13 11 9 16 16 H 1.48497 * 109.47104 * 240.00206 * 13 11 9 17 17 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 18 18 C 1.38311 * 120.08392 * 279.72726 * 17 2 1 19 19 C 1.37943 * 120.36917 * 179.73935 * 18 17 2 20 20 C 1.39365 * 120.13423 * 0.50929 * 19 18 17 21 21 C 1.38902 * 118.94397 * 359.76847 * 20 19 18 22 22 C 1.37676 * 120.80665 * 359.97438 * 21 20 19 23 23 C 1.51130 * 106.34181 * 179.97438 * 21 20 19 24 24 C 1.51400 * 104.06961 * 359.97438 * 23 21 20 25 25 O 1.21287 * 126.44618 * 179.97438 * 24 23 21 26 26 N 1.34371 * 107.11259 * 0.02562 * 24 23 21 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 31 31 H 0.97000 * 119.99549 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47602 * 299.99940 * 8 7 5 33 33 H 1.09006 * 109.46868 * 59.99976 * 8 7 5 34 34 H 0.96997 * 119.99506 * 180.02562 * 12 11 9 35 35 H 1.07994 * 119.81201 * 359.97438 * 18 17 2 36 36 H 1.07997 * 119.92973 * 180.28137 * 19 18 17 37 37 H 1.08006 * 120.03977 * 179.97438 * 22 21 20 38 38 H 1.08996 * 110.51304 * 118.64346 * 23 21 20 39 39 H 1.09004 * 110.51526 * 241.35684 * 23 21 20 40 40 H 0.96998 * 123.87783 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1629 2.4103 7 7 2.6069 -0.6508 3.4548 8 6 2.7520 0.0814 4.7154 9 6 3.2733 -0.8494 5.7798 10 1 3.4765 -1.8829 5.5411 11 6 3.4917 -0.3814 7.0582 12 7 3.2446 0.8773 7.3487 13 14 4.1385 -1.5349 8.3774 14 1 4.3342 -2.8884 7.7987 15 1 5.4353 -1.0238 8.8895 16 1 3.1607 -1.6095 9.4925 17 6 2.0323 -0.7104 -1.2305 18 6 2.0728 -2.0925 -1.2651 19 6 2.5265 -2.7489 -2.3904 20 6 2.9580 -2.0218 -3.4982 21 6 2.9178 -0.6342 -3.4489 22 6 2.4595 0.0184 -2.3266 23 6 3.4424 -0.1460 -4.7795 24 6 3.7646 -1.4168 -5.5368 25 8 4.2147 -1.4914 -6.6606 26 7 3.4571 -2.4465 -4.7301 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.2491 -1.6318 1.1526 31 1 2.8372 -1.5921 3.4113 32 1 3.4521 0.9056 4.5784 33 1 1.7825 0.4751 5.0205 34 1 3.3987 1.2066 8.2480 35 1 1.7438 -2.6609 -0.4079 36 1 2.5508 -3.8283 -2.4114 37 1 2.4340 1.0979 -2.3015 38 1 2.6786 0.4282 -5.3038 39 1 4.3423 0.4528 -4.6388 40 1 3.5698 -3.3781 -4.9757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785740060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:26 Heat of formation + Delta-G solvation = -37.262046 kcal Electronic energy + Delta-G solvation = -23323.678139 eV Core-core repulsion = 19717.139891 eV Total energy + Delta-G solvation = -3606.538248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80752 -39.68937 -38.69508 -36.75412 -34.63817 -33.95795 -32.69744 -32.38669 -30.85465 -29.00395 -28.16540 -26.95972 -24.00134 -22.70594 -22.58633 -21.57146 -20.77013 -19.94694 -18.32028 -18.24101 -17.07573 -16.43976 -16.39376 -15.84229 -15.39258 -14.91077 -14.77722 -14.62756 -14.30311 -14.15027 -13.70206 -13.60738 -13.38584 -13.23889 -13.05389 -12.80667 -12.68020 -11.97744 -11.89787 -11.75184 -11.48791 -11.02620 -10.98097 -10.92652 -10.87958 -10.59897 -10.30485 -9.42390 -9.35219 -9.24719 -8.82991 -8.70678 -8.31961 -7.76945 -6.15603 -4.21940 0.74828 0.95233 2.04876 2.58744 3.22427 3.23741 3.31247 3.34005 3.46572 3.70783 3.94517 4.01185 4.32824 4.41427 4.52049 4.77432 4.88581 4.95735 5.02814 5.09608 5.20659 5.26622 5.35560 5.41910 5.57199 5.64399 5.74690 5.88451 5.94600 6.16291 6.23618 6.31731 6.34904 6.60766 6.86940 7.11375 7.51526 7.53336 7.55237 7.57487 7.90338 8.04124 8.76739 8.93946 9.33162 9.48111 10.94677 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.002425 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.769239 B =11545.817660 C =11987.206299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.206 3.794 3 H 0.096 0.904 4 N -0.752 5.752 5 C 0.694 3.306 6 O -0.600 6.600 7 N -0.730 5.730 8 C 0.267 3.733 9 C -0.541 4.541 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.100 4.100 18 C -0.077 4.077 19 C -0.131 4.131 20 C 0.134 3.866 21 C -0.139 4.139 22 C -0.054 4.054 23 C -0.115 4.115 24 C 0.529 3.471 25 O -0.508 6.508 26 N -0.660 5.660 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.389 0.611 31 H 0.386 0.614 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -7.201 -22.619 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.100 3.900 3 H 0.114 0.886 4 N -0.410 5.410 5 C 0.394 3.606 6 O -0.479 6.479 7 N -0.381 5.381 8 C 0.146 3.854 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.101 4.101 18 C -0.096 4.096 19 C -0.152 4.152 20 C 0.037 3.963 21 C -0.142 4.142 22 C -0.073 4.073 23 C -0.154 4.154 24 C 0.317 3.683 25 O -0.383 6.383 26 N -0.303 5.303 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.856 -5.859 -23.025 23.930 hybrid contribution 0.623 -2.052 0.700 2.256 sum -2.233 -7.912 -22.325 23.790 Atomic orbital electron populations 1.22198 0.94608 1.02143 1.02707 1.19442 0.93724 0.96520 0.80326 0.88563 1.45314 1.73389 1.13232 1.09094 1.16132 0.78880 0.85267 0.80312 1.90872 1.57872 1.14542 1.84585 1.45724 1.68361 1.13594 1.10458 1.18981 0.97214 0.91965 0.77271 1.21263 1.45479 0.96543 0.94636 0.91930 1.24949 0.95305 0.95312 0.98518 1.69991 1.47437 1.14039 1.20797 0.86364 0.78563 0.80620 0.81362 1.19693 1.20830 1.20823 1.19958 1.00673 0.93745 0.95760 1.20707 0.97856 0.93845 0.97212 1.20329 1.03436 0.99764 0.91684 1.18135 0.97901 0.93656 0.86579 1.19718 1.05356 0.92775 0.96341 1.20122 0.96260 1.00278 0.90618 1.21060 1.04298 0.97153 0.92870 1.20647 0.76153 0.86634 0.84893 1.90826 1.44149 1.86225 1.17077 1.43744 1.61775 1.10580 1.14189 0.92580 0.91204 0.91909 0.77635 0.78215 0.95738 0.95729 0.92529 0.85000 0.85426 0.84805 0.85795 0.85756 0.74955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.47 37.16 0.35 -1.38 16 2 C 0.21 2.42 2.78 -69.08 -0.19 2.23 16 3 H 0.10 1.30 7.44 -51.93 -0.39 0.92 16 4 N -0.75 -10.35 5.03 -59.81 -0.30 -10.65 16 5 C 0.69 13.66 8.53 -86.92 -0.74 12.92 16 6 O -0.60 -14.34 16.00 5.28 0.08 -14.26 16 7 N -0.73 -15.15 5.55 -66.41 -0.37 -15.52 16 8 C 0.27 7.03 5.43 -5.19 -0.03 7.00 16 9 C -0.54 -14.53 9.28 -34.44 -0.32 -14.85 16 10 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 13 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 C -0.10 -0.92 4.96 -104.54 -0.52 -1.43 16 18 C -0.08 -0.61 9.04 -39.66 -0.36 -0.97 16 19 C -0.13 -0.94 10.07 -39.27 -0.40 -1.33 16 20 C 0.13 1.05 7.11 -83.69 -0.60 0.46 16 21 C -0.14 -1.10 6.35 -104.37 -0.66 -1.76 16 22 C -0.05 -0.45 9.66 -39.73 -0.38 -0.83 16 23 C -0.11 -0.77 6.88 -28.48 -0.20 -0.97 16 24 C 0.53 4.80 8.71 -10.82 -0.09 4.71 16 25 O -0.51 -6.38 18.03 5.55 0.10 -6.28 16 26 N -0.66 -4.88 5.88 -9.70 -0.06 -4.93 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.39 4.24 6.87 -40.82 -0.28 3.96 16 31 H 0.39 6.80 8.34 -40.82 -0.34 6.46 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.13 0.87 6.89 -52.49 -0.36 0.50 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.93 8.04 -52.48 -0.42 0.50 16 38 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.41 2.25 8.96 -40.82 -0.37 1.88 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -34.88 345.88 -8.92 -43.80 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.07 Total: 6.76 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -4.23 Total: 5.42 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.01 Total: -56.30 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.18 Total: -20.54 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.88 -8.92 -43.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785740060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.534 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds