Wall clock time and date at job start Tue Mar 31 2020 08:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.46499 * 120.00065 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47138 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00043 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00213 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00201 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47001 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47188 * 120.00103 * 13 11 9 16 16 H 1.48497 * 109.47104 * 240.00206 * 13 11 9 17 17 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 18 18 C 1.38311 * 120.08392 * 279.72726 * 17 2 1 19 19 C 1.37943 * 120.36917 * 179.73935 * 18 17 2 20 20 C 1.39365 * 120.13423 * 0.50929 * 19 18 17 21 21 C 1.38902 * 118.94397 * 359.76847 * 20 19 18 22 22 C 1.37676 * 120.80665 * 359.97438 * 21 20 19 23 23 C 1.51130 * 106.34181 * 179.97438 * 21 20 19 24 24 C 1.51400 * 104.06961 * 359.97438 * 23 21 20 25 25 O 1.21287 * 126.44618 * 179.97438 * 24 23 21 26 26 N 1.34371 * 107.11259 * 0.02562 * 24 23 21 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 31 31 H 0.97000 * 119.99549 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47602 * 299.99940 * 8 7 5 33 33 H 1.09006 * 109.46868 * 59.99976 * 8 7 5 34 34 H 0.96997 * 119.99506 * 180.02562 * 12 11 9 35 35 H 1.07994 * 119.81201 * 359.97438 * 18 17 2 36 36 H 1.07997 * 119.92973 * 180.28137 * 19 18 17 37 37 H 1.08006 * 120.03977 * 179.97438 * 22 21 20 38 38 H 1.08996 * 110.51304 * 118.64346 * 23 21 20 39 39 H 1.09004 * 110.51526 * 241.35684 * 23 21 20 40 40 H 0.96998 * 123.87783 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1629 2.4103 7 7 2.6069 -0.6508 3.4548 8 6 2.7520 0.0814 4.7154 9 6 3.2733 -0.8494 5.7798 10 1 3.4765 -1.8829 5.5411 11 6 3.4917 -0.3814 7.0582 12 7 3.2446 0.8773 7.3487 13 14 4.1385 -1.5349 8.3774 14 1 4.3342 -2.8884 7.7987 15 1 5.4353 -1.0238 8.8895 16 1 3.1607 -1.6095 9.4925 17 6 2.0323 -0.7104 -1.2305 18 6 2.0728 -2.0925 -1.2651 19 6 2.5265 -2.7489 -2.3904 20 6 2.9580 -2.0218 -3.4982 21 6 2.9178 -0.6342 -3.4489 22 6 2.4595 0.0184 -2.3266 23 6 3.4424 -0.1460 -4.7795 24 6 3.7646 -1.4168 -5.5368 25 8 4.2147 -1.4914 -6.6606 26 7 3.4571 -2.4465 -4.7301 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.2491 -1.6318 1.1526 31 1 2.8372 -1.5921 3.4113 32 1 3.4521 0.9056 4.5784 33 1 1.7825 0.4751 5.0205 34 1 3.3987 1.2066 8.2480 35 1 1.7438 -2.6609 -0.4079 36 1 2.5508 -3.8283 -2.4114 37 1 2.4340 1.0979 -2.3015 38 1 2.6786 0.4282 -5.3038 39 1 4.3423 0.4528 -4.6388 40 1 3.5698 -3.3781 -4.9757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785740060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:25 Heat of formation + Delta-G solvation = -63.409404 kcal Electronic energy + Delta-G solvation = -23324.811974 eV Core-core repulsion = 19717.139891 eV Total energy + Delta-G solvation = -3607.672083 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.44992 -41.01763 -39.65892 -37.70240 -36.12976 -35.41770 -34.33578 -33.27834 -32.01138 -29.80144 -28.87674 -28.81918 -25.19477 -24.22031 -23.33591 -22.24662 -22.00908 -21.17215 -19.84560 -18.94630 -18.15221 -17.80584 -17.28332 -17.05322 -16.56327 -16.33545 -16.27621 -15.63836 -15.31559 -15.07007 -14.80058 -14.59049 -14.48917 -14.10784 -14.02299 -13.94863 -13.89632 -13.45127 -13.33456 -12.88135 -12.74313 -12.71524 -12.21366 -12.18643 -11.76395 -11.71895 -11.41073 -11.34773 -11.16650 -10.78449 -10.23619 -9.82671 -9.55852 -8.98504 -8.25681 -6.41450 0.08568 0.36414 1.36528 1.45690 1.46838 1.59953 1.94772 1.99623 2.32053 2.41850 2.75756 3.07169 3.09586 3.40970 3.61333 3.70882 3.89197 4.18599 4.24815 4.35876 4.46705 4.48899 4.54960 4.77014 4.83828 4.94719 5.02352 5.10454 5.15642 5.25151 5.32021 5.35551 5.46395 5.53624 5.56243 5.70516 5.75634 5.77745 5.89507 5.98650 6.31874 6.71067 6.90282 7.28091 7.37376 7.79616 8.86818 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.002425 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.769239 B =11545.817660 C =11987.206299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.205 3.795 3 H 0.074 0.926 4 N -0.727 5.727 5 C 0.693 3.307 6 O -0.646 6.646 7 N -0.725 5.725 8 C 0.286 3.714 9 C -0.552 4.552 10 H 0.084 0.916 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.985 3.015 14 H -0.253 1.253 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.108 4.108 18 C -0.079 4.079 19 C -0.125 4.125 20 C 0.127 3.873 21 C -0.142 4.142 22 C -0.058 4.058 23 C -0.110 4.110 24 C 0.525 3.475 25 O -0.549 6.549 26 N -0.651 5.651 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.408 0.592 31 H 0.404 0.596 32 H -0.015 1.015 33 H -0.014 1.014 34 H 0.268 0.732 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -9.863 -23.277 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.101 3.899 3 H 0.092 0.908 4 N -0.385 5.385 5 C 0.393 3.607 6 O -0.529 6.529 7 N -0.378 5.378 8 C 0.162 3.838 9 C -0.590 4.590 10 H 0.102 0.898 11 C -0.197 4.197 12 N -0.570 5.570 13 Si 0.808 3.192 14 H -0.176 1.176 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.110 4.110 18 C -0.097 4.097 19 C -0.145 4.145 20 C 0.030 3.970 21 C -0.145 4.145 22 C -0.077 4.077 23 C -0.149 4.149 24 C 0.314 3.686 25 O -0.428 6.428 26 N -0.294 5.294 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.245 0.755 31 H 0.239 0.761 32 H 0.003 0.997 33 H 0.004 0.996 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.569 -8.607 -23.735 25.378 hybrid contribution 0.493 -1.208 0.808 1.534 sum -2.076 -9.814 -22.927 25.026 Atomic orbital electron populations 1.22138 0.93841 1.03014 1.02086 1.19510 0.94324 0.95698 0.80412 0.90750 1.45092 1.71791 1.13899 1.07708 1.16280 0.78329 0.84767 0.81311 1.90842 1.59625 1.16898 1.85498 1.45298 1.69013 1.14192 1.09323 1.18389 0.94006 0.91586 0.79787 1.21637 1.45129 0.97377 0.94813 0.89809 1.26056 0.95311 0.96988 1.01341 1.70152 1.48712 1.16478 1.21626 0.85110 0.77566 0.78824 0.77689 1.17610 1.20604 1.20536 1.19688 1.02202 0.94346 0.94723 1.20870 0.97586 0.93232 0.98048 1.20556 1.02165 1.01016 0.90804 1.18317 0.97974 0.93869 0.86799 1.19799 1.05124 0.93013 0.96517 1.20197 0.96089 1.00872 0.90497 1.21108 1.05350 0.96374 0.92064 1.20971 0.75433 0.87705 0.84459 1.90806 1.46223 1.86876 1.18846 1.43697 1.60890 1.10976 1.13832 0.90905 0.94530 0.89807 0.75471 0.76059 0.99725 0.99641 0.92314 0.83504 0.82982 0.83969 0.83983 0.84469 0.73954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.47 71.98 0.68 -2.52 16 2 C 0.21 4.66 2.78 44.24 0.12 4.78 16 3 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 4 N -0.73 -19.27 5.03 -461.41 -2.32 -21.59 16 5 C 0.69 27.67 8.53 179.05 1.53 29.20 16 6 O -0.65 -32.26 16.00 -4.01 -0.06 -32.32 16 7 N -0.72 -30.33 5.55 -482.28 -2.68 -33.00 16 8 C 0.29 15.63 5.43 85.63 0.46 16.10 16 9 C -0.55 -29.66 9.28 25.60 0.24 -29.42 16 10 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 11 C 0.00 0.14 5.46 84.65 0.46 0.60 16 12 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 13 Si 0.98 41.87 29.54 68.60 2.03 43.90 16 14 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 17 C -0.11 -1.76 4.96 -19.81 -0.10 -1.86 16 18 C -0.08 -0.99 9.04 22.22 0.20 -0.79 16 19 C -0.12 -1.36 10.07 22.47 0.23 -1.13 16 20 C 0.13 1.66 7.11 38.35 0.27 1.93 16 21 C -0.14 -1.91 6.35 -19.70 -0.13 -2.04 16 22 C -0.06 -0.85 9.66 22.17 0.21 -0.63 16 23 C -0.11 -1.26 6.88 29.46 0.20 -1.06 16 24 C 0.52 8.82 8.71 87.94 0.77 9.58 16 25 O -0.55 -13.54 18.03 -3.05 -0.06 -13.59 16 26 N -0.65 -8.30 5.88 -303.20 -1.78 -10.08 16 27 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.41 7.92 6.87 -92.71 -0.64 7.28 16 31 H 0.40 13.73 8.34 -92.71 -0.77 12.96 16 32 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 34 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.15 1.37 6.89 -2.91 -0.02 1.35 16 36 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.14 1.77 8.04 -2.91 -0.02 1.75 16 38 H 0.14 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.42 3.76 8.96 -92.71 -0.83 2.93 16 Total: -1.00 -78.67 345.88 -0.57 -79.24 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -1.13 Total: 20.32 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 5.16 Total: 22.74 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -6.50 Total: -120.28 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -0.12 Total: -45.92 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -78.67 -0.57 -79.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785740060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.830 kcal (2) G-P(sol) polarization free energy of solvation -78.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds