Wall clock time and date at job start Tue Mar 31 2020 08:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46993 * 2 1 4 4 H 1.09000 * 109.47583 * 54.99900 * 3 2 1 5 5 C 1.50703 * 109.47171 * 174.99803 * 3 2 1 6 6 H 1.08005 * 119.99965 * 119.99610 * 5 3 2 7 7 C 1.37875 * 119.99939 * 300.00121 * 5 3 2 8 8 N 1.31512 * 120.00121 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00144 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47239 * 59.99371 * 9 7 5 11 11 H 1.48492 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46907 * 299.99840 * 9 7 5 13 13 O 1.45199 * 109.47035 * 294.99407 * 3 2 1 14 14 C 1.34807 * 116.99616 * 90.00726 * 13 3 2 15 15 O 1.21511 * 120.00268 * 359.97438 * 14 13 3 16 16 C 1.47359 * 119.99871 * 180.02562 * 14 13 3 17 17 C 1.36946 * 120.61815 * 180.02562 * 16 14 13 18 18 C 1.40127 * 119.25120 * 179.97438 * 17 16 14 19 19 C 1.50697 * 119.76545 * 180.02562 * 18 17 16 20 20 N 1.31139 * 120.46894 * 0.02562 * 18 17 16 21 21 C 1.33678 * 121.20544 * 359.97438 * 20 18 17 22 22 C 1.39077 * 132.56056 * 179.97438 * 21 20 18 23 23 C 1.38494 * 107.67100 * 180.02562 * 22 21 20 24 24 C 1.50706 * 125.47887 * 180.02562 * 23 22 21 25 25 N 1.31531 * 109.04414 * 0.27027 * 23 22 21 26 26 N 1.37303 * 120.64233 * 0.02562 * 21 20 18 27 27 H 1.08999 * 109.46944 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46954 * 300.00033 * 1 2 3 29 29 H 1.08998 * 109.46958 * 60.00187 * 1 2 3 30 30 H 1.08994 * 109.47193 * 239.99515 * 2 1 3 31 31 H 1.08998 * 109.46958 * 119.99813 * 2 1 3 32 32 H 0.97003 * 120.00261 * 180.02562 * 8 7 5 33 33 H 1.08006 * 120.37548 * 359.97438 * 17 16 14 34 34 H 1.08998 * 109.47593 * 90.00293 * 19 18 17 35 35 H 1.08997 * 109.46955 * 210.00286 * 19 18 17 36 36 H 1.09003 * 109.47214 * 330.00067 * 19 18 17 37 37 H 1.08005 * 126.16495 * 0.03600 * 22 21 20 38 38 H 1.09001 * 109.46953 * 90.00323 * 24 23 22 39 39 H 1.09000 * 109.47318 * 209.99921 * 24 23 22 40 40 H 1.09000 * 109.47161 * 330.00551 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8800 1.3813 10 1 6.5005 2.2799 1.3808 11 1 6.3978 0.2168 2.6505 12 1 6.5967 0.1452 0.2345 13 8 1.6560 2.0915 -1.2408 14 6 0.4678 2.7281 -1.2561 15 8 -0.2282 2.7398 -0.2601 16 6 0.0124 3.4088 -2.4811 17 6 -1.1922 4.0597 -2.5107 18 6 -1.5968 4.6979 -3.6907 19 6 -2.9198 5.4181 -3.7359 20 7 -0.8324 4.6729 -4.7560 21 6 0.3467 4.0431 -4.7477 22 6 1.3270 3.8691 -5.7188 23 6 2.3492 3.1236 -5.1554 24 6 3.6143 2.7025 -5.8578 25 7 2.0359 2.8377 -3.9103 26 7 0.7898 3.4022 -3.6172 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8292 -0.0604 2.9504 33 1 -1.8231 4.0809 -1.6343 34 1 -2.7785 6.4568 -3.4369 35 1 -3.3181 5.3830 -4.7499 36 1 -3.6197 4.9356 -3.0537 37 1 1.2967 4.2473 -6.7300 38 1 4.3794 3.4660 -5.7170 39 1 3.9634 1.7574 -5.4419 40 1 3.4152 2.5796 -6.9224 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787092698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:49 Heat of formation + Delta-G solvation = 5.641437 kcal Electronic energy + Delta-G solvation = -24952.698985 eV Core-core repulsion = 21348.021172 eV Total energy + Delta-G solvation = -3604.677813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.48275 -41.50868 -39.57643 -37.89326 -35.81576 -35.34401 -33.67448 -33.39301 -31.43799 -29.57743 -29.42255 -28.48604 -26.74530 -25.06895 -23.59373 -22.75008 -21.79632 -21.31424 -20.02220 -18.89174 -18.09607 -18.00961 -17.71836 -17.52772 -16.85596 -16.57093 -15.84648 -15.28379 -14.97615 -14.92125 -14.83704 -14.29077 -14.22797 -13.92459 -13.90948 -13.49870 -13.39143 -13.28647 -13.23187 -13.07623 -12.88755 -12.64568 -12.61169 -12.22781 -12.16308 -12.12901 -11.94892 -11.80397 -11.51317 -11.04001 -10.93311 -10.59140 -10.38517 -9.09825 -8.32308 -6.48460 -1.20087 -0.29837 0.80902 1.05790 1.34734 1.41026 1.43421 1.53234 1.60990 2.22043 2.33527 2.61018 2.92327 2.97117 3.32116 3.67903 3.74874 3.90890 4.15415 4.27872 4.29737 4.36231 4.42518 4.53406 4.68058 4.70318 4.77419 4.79956 4.82017 4.86715 4.97682 5.05553 5.10754 5.18523 5.23218 5.37395 5.43274 5.52836 5.56871 5.76462 5.99793 6.35715 6.41822 6.46762 6.70294 7.21020 8.74460 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.004881 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.893181 B = 5734.585290 C = 7034.785525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.015 0.985 5 C -0.550 4.550 6 H 0.057 0.943 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.978 3.022 10 H -0.271 1.271 11 H -0.272 1.272 12 H -0.266 1.266 13 O -0.331 6.331 14 C 0.494 3.506 15 O -0.502 6.502 16 C 0.130 3.870 17 C -0.124 4.124 18 C 0.204 3.796 19 C -0.100 4.100 20 N -0.455 5.455 21 C 0.230 3.770 22 C -0.251 4.251 23 C 0.095 3.905 24 C -0.071 4.071 25 N -0.320 5.320 26 N -0.315 5.315 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.273 0.727 33 H 0.205 0.795 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.194 0.806 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 8.239 -14.618 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.033 0.967 5 C -0.587 4.587 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.801 3.199 10 H -0.196 1.196 11 H -0.196 1.196 12 H -0.191 1.191 13 O -0.246 6.246 14 C 0.337 3.663 15 O -0.392 6.392 16 C 0.015 3.985 17 C -0.148 4.148 18 C 0.039 3.961 19 C -0.157 4.157 20 N -0.168 5.168 21 C 0.004 3.996 22 C -0.281 4.281 23 C -0.064 4.064 24 C -0.129 4.129 25 N -0.146 5.146 26 N -0.090 5.090 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.222 0.778 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.211 0.789 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.421 7.806 -13.925 18.536 hybrid contribution 0.970 -0.272 0.742 1.251 sum -8.451 7.534 -13.183 17.377 Atomic orbital electron populations 1.21719 0.96017 1.00952 1.00010 1.21873 0.94694 0.97820 1.02283 1.20558 0.94865 0.89402 0.77914 0.96694 1.21185 0.90299 1.40362 1.06854 0.92449 1.25714 1.04100 0.93682 0.94176 1.69971 1.37432 1.37662 1.09748 0.85307 0.77815 0.78719 0.78026 1.19634 1.19628 1.19117 1.86788 1.33394 1.61629 1.42762 1.20709 0.81447 0.77301 0.86857 1.90827 1.55542 1.58787 1.34057 1.20019 0.92814 1.01304 0.84330 1.22513 0.92840 0.96136 1.03359 1.22688 0.97115 0.90773 0.85560 1.21066 0.87415 1.00838 1.06367 1.67860 1.01902 1.17602 1.29460 1.21229 0.94136 0.96554 0.87678 1.21272 0.93148 1.12240 1.01476 1.23163 0.98393 0.94257 0.90574 1.20459 0.89606 1.02454 1.00413 1.78389 0.94054 1.23916 1.18249 1.47340 1.15449 1.36719 1.09483 0.91688 0.93494 0.95319 0.94341 0.88884 0.91814 0.77793 0.86923 0.88378 0.86737 0.78920 0.88578 0.91181 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.56 71.98 0.62 -5.13 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.51 16 3 C 0.23 12.69 2.25 29.85 0.07 12.76 16 4 H 0.02 0.94 7.16 -2.39 -0.02 0.92 16 5 C -0.55 -32.44 8.90 25.60 0.23 -32.22 16 6 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 7 C 0.02 1.32 5.29 84.65 0.45 1.77 16 8 N -0.91 -52.17 11.29 21.45 0.24 -51.92 16 9 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 O -0.33 -17.37 8.68 -57.19 -0.50 -17.86 16 14 C 0.49 22.30 6.39 70.22 0.45 22.75 16 15 O -0.50 -22.95 13.54 19.80 0.27 -22.69 16 16 C 0.13 4.82 6.82 40.33 0.27 5.09 16 17 C -0.12 -3.22 9.28 22.43 0.21 -3.01 16 18 C 0.20 4.36 6.82 43.12 0.29 4.66 16 19 C -0.10 -0.96 10.18 71.23 0.73 -0.23 16 20 N -0.45 -12.27 10.36 -180.74 -1.87 -14.14 16 21 C 0.23 7.45 7.93 133.23 1.06 8.51 16 22 C -0.25 -7.09 10.82 22.53 0.24 -6.85 16 23 C 0.09 2.96 7.15 42.67 0.31 3.27 16 24 C -0.07 -1.52 10.43 71.24 0.74 -0.78 16 25 N -0.32 -13.14 11.55 -47.89 -0.55 -13.69 16 26 N -0.32 -12.12 3.95 -182.04 -0.72 -12.84 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 2.13 7.79 -2.39 -0.02 2.11 16 29 H 0.03 1.23 6.06 -2.39 -0.01 1.22 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 5.17 5.95 -2.39 -0.01 5.16 16 32 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.21 4.09 7.65 -2.91 -0.02 4.07 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.57 8.09 -2.39 -0.02 0.55 16 37 H 0.19 3.93 8.06 -2.91 -0.02 3.90 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.82 340.40 5.79 -70.03 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.06 Total: 13.07 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.83 Total: 4.08 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -2.90 Total: -92.60 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.23 Total: -40.55 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -75.82 5.79 -70.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.673 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds