Wall clock time and date at job start Tue Mar 31 2020 08:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34885 * 120.00279 * 2 1 4 4 C 1.46343 * 119.99751 * 3.35370 * 3 2 1 5 5 O 1.21701 * 120.00159 * 8.86334 * 4 3 2 6 6 N 1.34782 * 119.99668 * 188.86190 * 4 3 2 7 7 C 1.46505 * 119.99429 * 174.64259 * 6 4 3 8 8 C 1.53000 * 109.46828 * 185.15792 * 7 6 4 9 9 C 1.50701 * 115.54953 * 58.37931 * 8 7 6 10 10 H 1.07999 * 120.00116 * 271.60697 * 9 8 7 11 11 C 1.37874 * 119.99845 * 91.60849 * 9 8 7 12 12 N 1.31524 * 120.00054 * 182.28885 * 11 9 8 13 13 Si 1.86804 * 120.00160 * 2.29328 * 11 9 8 14 14 H 1.48493 * 109.47238 * 93.40437 * 13 11 9 15 15 H 1.48504 * 109.46747 * 213.40673 * 13 11 9 16 16 H 1.48503 * 109.46770 * 333.39966 * 13 11 9 17 17 C 1.53004 * 117.49842 * 272.71371 * 8 7 6 18 18 C 1.53002 * 117.50010 * 204.05234 * 8 7 6 19 19 C 1.47115 * 120.00069 * 179.97438 * 2 1 3 20 20 C 1.39895 * 120.14195 * 295.00385 * 19 2 1 21 21 C 1.37791 * 119.85464 * 180.29633 * 20 19 2 22 22 C 1.38688 * 120.13702 * 359.44673 * 21 20 19 23 23 F 1.35100 * 119.85055 * 180.27708 * 22 21 20 24 24 C 1.38679 * 120.29635 * 0.55533 * 22 21 20 25 25 C 1.37793 * 120.14365 * 359.72169 * 24 22 21 26 26 H 1.08991 * 109.47345 * 277.70168 * 1 2 3 27 27 H 1.09006 * 109.46972 * 37.70526 * 1 2 3 28 28 H 1.09005 * 109.47287 * 157.69663 * 1 2 3 29 29 H 1.07999 * 120.00334 * 183.36093 * 3 2 1 30 30 H 0.96998 * 120.00195 * 354.63566 * 6 4 3 31 31 H 1.09000 * 109.47279 * 305.15003 * 7 6 4 32 32 H 1.08999 * 109.47621 * 65.15798 * 7 6 4 33 33 H 0.97000 * 119.99603 * 179.97438 * 12 11 9 34 34 H 1.09000 * 117.50079 * 359.97438 * 17 8 7 35 35 H 1.08997 * 117.49756 * 145.02349 * 17 8 7 36 36 H 1.08999 * 117.49608 * 214.97947 * 18 8 7 37 37 H 1.08998 * 117.49685 * 359.97438 * 18 8 7 38 38 H 1.07998 * 120.07633 * 0.02562 * 20 19 2 39 39 H 1.07997 * 119.92651 * 179.71701 * 21 20 19 40 40 H 1.07998 * 119.92782 * 179.69936 * 24 22 21 41 41 H 1.07997 * 120.07332 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1814 1.1681 0.0000 4 6 1.4516 2.4344 0.0741 5 8 0.2553 2.4351 0.2975 6 7 2.1044 3.5999 -0.1050 7 6 1.3567 4.8591 -0.1478 8 6 2.3099 6.0067 -0.4873 9 6 3.0503 5.8721 -1.7929 10 1 3.9977 5.3546 -1.8256 11 6 2.5183 6.4095 -2.9458 12 7 3.1421 6.2531 -4.0931 13 14 0.9115 7.3599 -2.8783 14 1 1.1992 8.8079 -2.7181 15 1 0.1543 7.1418 -4.1370 16 1 0.1037 6.8852 -1.7261 17 6 3.0416 6.6842 0.6732 18 6 1.9053 7.4150 -0.0466 19 6 2.2425 -1.2740 0.0006 20 6 2.1509 -2.1376 1.0974 21 6 2.8473 -3.3266 1.0943 22 6 3.6285 -3.6731 0.0020 23 9 4.3044 -4.8429 0.0027 24 6 3.7237 -2.8216 -1.0884 25 6 3.0369 -1.6271 -1.0955 26 1 -0.3633 0.1377 1.0183 27 1 -0.3633 0.8131 -0.6286 28 1 -0.3634 -0.9508 -0.3900 29 1 3.2600 1.1689 -0.0548 30 1 3.0692 3.6050 -0.2054 31 1 0.5799 4.7946 -0.9097 32 1 0.8984 5.0428 0.8239 33 1 2.7676 6.6310 -4.9041 34 1 2.8436 6.3125 1.6785 35 1 4.0583 7.0328 0.4921 36 1 2.1750 8.2440 -0.7009 37 1 0.9599 7.5238 0.4848 38 1 1.5393 -1.8709 1.9466 39 1 2.7810 -3.9920 1.9423 40 1 4.3376 -3.0952 -1.9337 41 1 3.1121 -0.9646 -1.9451 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:37 Heat of formation + Delta-G solvation = -19.751934 kcal Electronic energy + Delta-G solvation = -23398.888231 eV Core-core repulsion = 19773.189317 eV Total energy + Delta-G solvation = -3625.698914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.14072 -39.73030 -38.96325 -37.17058 -34.72571 -33.42818 -32.15564 -31.47673 -29.78124 -28.19962 -26.31783 -25.18541 -23.42734 -23.18238 -21.83966 -20.69083 -19.53637 -18.66994 -17.89156 -16.67573 -16.59793 -16.40326 -15.83610 -15.71399 -15.11024 -14.87742 -14.58558 -14.35914 -13.88992 -13.85761 -13.57172 -13.43200 -13.18981 -12.86525 -12.69355 -12.37618 -12.30574 -12.00767 -11.79577 -11.60597 -11.31769 -11.20002 -10.90712 -10.48899 -10.22115 -9.64541 -9.43546 -9.37126 -9.29197 -9.16122 -8.72001 -8.64676 -8.57143 -8.20817 -6.19203 -4.24019 0.66147 0.96345 1.49085 3.24827 3.26026 3.36749 3.41719 3.61701 3.80978 3.98173 4.36843 4.48310 4.50803 4.57738 4.88311 4.94276 5.04550 5.10352 5.12563 5.42493 5.55479 5.63123 5.66170 5.73191 5.82664 5.87072 5.88124 5.98167 6.03045 6.10219 6.18405 6.22209 6.39028 6.41405 6.45563 6.55317 6.64022 6.68663 6.93913 7.04697 7.13885 7.64569 8.18506 8.37151 8.76013 8.80376 9.43875 10.91977 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002914 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.923364 B = 9604.904165 C =10001.108620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.014 4.014 3 C -0.192 4.192 4 C 0.536 3.464 5 O -0.555 6.555 6 N -0.695 5.695 7 C 0.159 3.841 8 C -0.015 4.015 9 C -0.491 4.491 10 H 0.078 0.922 11 C 0.079 3.921 12 N -0.894 5.894 13 Si 0.881 3.119 14 H -0.280 1.280 15 H -0.295 1.295 16 H -0.256 1.256 17 C -0.181 4.181 18 C -0.193 4.193 19 C -0.063 4.063 20 C -0.074 4.074 21 C -0.153 4.153 22 C 0.095 3.905 23 F -0.141 7.141 24 C -0.151 4.151 25 C -0.074 4.074 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.127 0.873 30 H 0.405 0.595 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 -16.068 9.183 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.016 4.016 3 C -0.213 4.213 4 C 0.325 3.675 5 O -0.438 6.438 6 N -0.343 5.343 7 C 0.035 3.965 8 C -0.016 4.016 9 C -0.528 4.528 10 H 0.096 0.904 11 C -0.124 4.124 12 N -0.531 5.531 13 Si 0.709 3.291 14 H -0.206 1.206 15 H -0.222 1.222 16 H -0.180 1.180 17 C -0.218 4.218 18 C -0.231 4.231 19 C -0.063 4.063 20 C -0.092 4.092 21 C -0.172 4.172 22 C 0.076 3.924 23 F -0.120 7.120 24 C -0.170 4.170 25 C -0.092 4.092 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.240 0.760 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.570 -16.028 9.110 18.503 hybrid contribution -0.039 0.443 -0.265 0.518 sum -1.610 -15.585 8.845 17.992 Atomic orbital electron populations 1.21072 0.89798 1.02371 1.03792 1.20927 0.96243 0.90574 0.93859 1.22869 1.00269 0.91955 1.06234 1.18211 0.87089 0.84365 0.77837 1.90734 1.15091 1.87802 1.50136 1.45739 1.11565 1.05937 1.71052 1.21047 0.93920 0.82573 0.98948 1.19641 0.97439 0.88984 0.95577 1.20166 1.06727 1.37406 0.88522 0.90354 1.24992 0.96937 0.95362 0.95087 1.69890 1.39535 1.44864 0.98815 0.86836 0.84358 0.80341 0.77550 1.20633 1.22234 1.17986 1.22917 0.96820 1.06252 0.95805 1.22918 0.98158 0.97514 1.04500 1.19043 0.97840 0.94580 0.94831 1.21128 0.97946 0.92280 0.97830 1.21057 0.99138 0.98661 0.98327 1.17892 0.95353 0.82981 0.96168 1.91498 1.78171 1.45518 1.96821 1.21105 1.02468 0.94961 0.98428 1.21306 0.94282 0.95651 0.97985 0.90353 0.88565 0.92995 0.85461 0.76013 0.91883 0.93831 0.92476 0.90882 0.89401 0.89279 0.90616 0.84611 0.84554 0.84419 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 8.47 36.00 0.31 -1.15 16 2 C -0.01 -0.17 5.48 -102.21 -0.56 -0.73 16 3 C -0.19 -2.66 9.64 -37.51 -0.36 -3.02 16 4 C 0.54 9.37 7.59 -13.00 -0.10 9.27 16 5 O -0.56 -10.96 13.31 5.19 0.07 -10.89 16 6 N -0.69 -12.70 5.37 -61.72 -0.33 -13.03 16 7 C 0.16 3.25 5.39 -4.04 -0.02 3.23 16 8 C -0.02 -0.33 0.93 -155.66 -0.14 -0.47 16 9 C -0.49 -12.65 9.04 -34.44 -0.31 -12.96 16 10 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 11 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 12 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 13 Si 0.88 21.15 24.76 -169.99 -4.21 16.94 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.26 -5.86 5.92 56.52 0.33 -5.53 16 17 C -0.18 -3.41 9.94 -26.69 -0.27 -3.68 16 18 C -0.19 -3.91 7.14 -26.69 -0.19 -4.10 16 19 C -0.06 -0.67 5.28 -105.06 -0.55 -1.22 16 20 C -0.07 -0.68 9.78 -39.12 -0.38 -1.07 16 21 C -0.15 -1.36 10.01 -39.58 -0.40 -1.75 16 22 C 0.10 0.94 7.31 -39.25 -0.29 0.66 16 23 F -0.14 -1.49 17.26 2.25 0.04 -1.45 16 24 C -0.15 -1.42 10.01 -39.58 -0.40 -1.82 16 25 C -0.07 -0.74 9.72 -39.12 -0.38 -1.12 16 26 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 27 H 0.10 1.48 6.14 -51.93 -0.32 1.16 16 28 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.41 6.93 8.24 -40.82 -0.34 6.59 16 31 H 0.06 1.42 7.56 -51.93 -0.39 1.03 16 32 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.09 1.90 6.53 -51.93 -0.34 1.56 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -29.73 349.77 -8.18 -37.92 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.65 Total: 8.44 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -4.14 Total: -17.87 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.44 Total: -38.35 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.21 Total: 16.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.73 -8.18 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.164 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds