Wall clock time and date at job start Tue Mar 31 2020 08:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34885 * 120.00279 * 2 1 4 4 C 1.46343 * 119.99751 * 3.35370 * 3 2 1 5 5 O 1.21701 * 120.00159 * 8.86334 * 4 3 2 6 6 N 1.34782 * 119.99668 * 188.86190 * 4 3 2 7 7 C 1.46505 * 119.99429 * 174.64259 * 6 4 3 8 8 C 1.53000 * 109.46828 * 185.15792 * 7 6 4 9 9 C 1.50701 * 115.54953 * 58.37931 * 8 7 6 10 10 H 1.07999 * 120.00116 * 271.60697 * 9 8 7 11 11 C 1.37874 * 119.99845 * 91.60849 * 9 8 7 12 12 N 1.31524 * 120.00054 * 182.28885 * 11 9 8 13 13 Si 1.86804 * 120.00160 * 2.29328 * 11 9 8 14 14 H 1.48493 * 109.47238 * 93.40437 * 13 11 9 15 15 H 1.48504 * 109.46747 * 213.40673 * 13 11 9 16 16 H 1.48503 * 109.46770 * 333.39966 * 13 11 9 17 17 C 1.53004 * 117.49842 * 272.71371 * 8 7 6 18 18 C 1.53002 * 117.50010 * 204.05234 * 8 7 6 19 19 C 1.47115 * 120.00069 * 179.97438 * 2 1 3 20 20 C 1.39895 * 120.14195 * 295.00385 * 19 2 1 21 21 C 1.37791 * 119.85464 * 180.29633 * 20 19 2 22 22 C 1.38688 * 120.13702 * 359.44673 * 21 20 19 23 23 F 1.35100 * 119.85055 * 180.27708 * 22 21 20 24 24 C 1.38679 * 120.29635 * 0.55533 * 22 21 20 25 25 C 1.37793 * 120.14365 * 359.72169 * 24 22 21 26 26 H 1.08991 * 109.47345 * 277.70168 * 1 2 3 27 27 H 1.09006 * 109.46972 * 37.70526 * 1 2 3 28 28 H 1.09005 * 109.47287 * 157.69663 * 1 2 3 29 29 H 1.07999 * 120.00334 * 183.36093 * 3 2 1 30 30 H 0.96998 * 120.00195 * 354.63566 * 6 4 3 31 31 H 1.09000 * 109.47279 * 305.15003 * 7 6 4 32 32 H 1.08999 * 109.47621 * 65.15798 * 7 6 4 33 33 H 0.97000 * 119.99603 * 179.97438 * 12 11 9 34 34 H 1.09000 * 117.50079 * 359.97438 * 17 8 7 35 35 H 1.08997 * 117.49756 * 145.02349 * 17 8 7 36 36 H 1.08999 * 117.49608 * 214.97947 * 18 8 7 37 37 H 1.08998 * 117.49685 * 359.97438 * 18 8 7 38 38 H 1.07998 * 120.07633 * 0.02562 * 20 19 2 39 39 H 1.07997 * 119.92651 * 179.71701 * 21 20 19 40 40 H 1.07998 * 119.92782 * 179.69936 * 24 22 21 41 41 H 1.07997 * 120.07332 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1814 1.1681 0.0000 4 6 1.4516 2.4344 0.0741 5 8 0.2553 2.4351 0.2975 6 7 2.1044 3.5999 -0.1050 7 6 1.3567 4.8591 -0.1478 8 6 2.3099 6.0067 -0.4873 9 6 3.0503 5.8721 -1.7929 10 1 3.9977 5.3546 -1.8256 11 6 2.5183 6.4095 -2.9458 12 7 3.1421 6.2531 -4.0931 13 14 0.9115 7.3599 -2.8783 14 1 1.1992 8.8079 -2.7181 15 1 0.1543 7.1418 -4.1370 16 1 0.1037 6.8852 -1.7261 17 6 3.0416 6.6842 0.6732 18 6 1.9053 7.4150 -0.0466 19 6 2.2425 -1.2740 0.0006 20 6 2.1509 -2.1376 1.0974 21 6 2.8473 -3.3266 1.0943 22 6 3.6285 -3.6731 0.0020 23 9 4.3044 -4.8429 0.0027 24 6 3.7237 -2.8216 -1.0884 25 6 3.0369 -1.6271 -1.0955 26 1 -0.3633 0.1377 1.0183 27 1 -0.3633 0.8131 -0.6286 28 1 -0.3634 -0.9508 -0.3900 29 1 3.2600 1.1689 -0.0548 30 1 3.0692 3.6050 -0.2054 31 1 0.5799 4.7946 -0.9097 32 1 0.8984 5.0428 0.8239 33 1 2.7676 6.6310 -4.9041 34 1 2.8436 6.3125 1.6785 35 1 4.0583 7.0328 0.4921 36 1 2.1750 8.2440 -0.7009 37 1 0.9599 7.5238 0.4848 38 1 1.5393 -1.8709 1.9466 39 1 2.7810 -3.9920 1.9423 40 1 4.3376 -3.0952 -1.9337 41 1 3.1121 -0.9646 -1.9451 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:36 Heat of formation + Delta-G solvation = -36.207719 kcal Electronic energy + Delta-G solvation = -23399.601808 eV Core-core repulsion = 19773.189317 eV Total energy + Delta-G solvation = -3626.412491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.91817 -40.91600 -39.96918 -38.77276 -35.78317 -34.89728 -34.20194 -32.19499 -30.67629 -29.41519 -27.98584 -26.86153 -24.37200 -23.90936 -23.41386 -21.86752 -21.17663 -19.98892 -18.67252 -18.33474 -17.86422 -17.29166 -17.08550 -16.69871 -16.59110 -16.21732 -15.96148 -15.42178 -15.23867 -14.80692 -14.62125 -14.54807 -14.43859 -14.37467 -14.15393 -13.84054 -13.45671 -13.16595 -13.07858 -12.78366 -12.70359 -12.61054 -12.15874 -12.03388 -11.97817 -11.51609 -10.99827 -10.72088 -10.58767 -10.41897 -10.28360 -10.13693 -9.78545 -9.42616 -8.29468 -6.35659 -0.18211 0.25420 0.45341 1.33455 1.40456 1.50921 2.24919 2.36856 2.46309 2.55549 3.05853 3.23285 3.26098 3.57197 3.78858 3.89213 4.01251 4.05459 4.24431 4.27250 4.36866 4.38366 4.40744 4.57025 4.60016 4.82531 4.83134 4.85625 4.91511 4.95124 5.05668 5.09950 5.11922 5.16615 5.29260 5.31100 5.47525 5.49040 5.55592 5.65695 5.71798 5.85453 6.28808 6.71838 6.79538 7.34456 7.37958 8.84962 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002914 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.923364 B = 9604.904165 C =10001.108620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.011 3.989 3 C -0.212 4.212 4 C 0.533 3.467 5 O -0.582 6.582 6 N -0.699 5.699 7 C 0.168 3.832 8 C -0.039 4.039 9 C -0.478 4.478 10 H 0.047 0.953 11 C 0.024 3.976 12 N -0.944 5.944 13 Si 0.931 3.069 14 H -0.271 1.271 15 H -0.306 1.306 16 H -0.237 1.237 17 C -0.155 4.155 18 C -0.194 4.194 19 C -0.077 4.077 20 C -0.070 4.070 21 C -0.149 4.149 22 C 0.085 3.915 23 F -0.146 7.146 24 C -0.153 4.153 25 C -0.079 4.079 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.409 0.591 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -17.024 11.325 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.009 3.991 3 C -0.233 4.233 4 C 0.324 3.676 5 O -0.466 6.466 6 N -0.348 5.348 7 C 0.044 3.956 8 C -0.040 4.040 9 C -0.515 4.515 10 H 0.065 0.935 11 C -0.174 4.174 12 N -0.583 5.583 13 Si 0.758 3.242 14 H -0.196 1.196 15 H -0.234 1.234 16 H -0.160 1.160 17 C -0.192 4.192 18 C -0.232 4.232 19 C -0.077 4.077 20 C -0.088 4.088 21 C -0.168 4.168 22 C 0.066 3.934 23 F -0.125 7.125 24 C -0.172 4.172 25 C -0.097 4.097 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.245 0.755 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.089 -16.988 11.282 20.499 hybrid contribution 0.181 0.605 -0.899 1.098 sum -1.909 -16.383 10.383 19.489 Atomic orbital electron populations 1.21029 0.90113 1.02374 1.03446 1.21057 0.96125 0.91042 0.90885 1.22768 1.00956 0.90629 1.08899 1.18733 0.86917 0.85097 0.76825 1.90720 1.16280 1.88226 1.51368 1.45739 1.11705 1.05751 1.71569 1.20792 0.93111 0.83016 0.98699 1.19492 0.99016 0.90519 0.94964 1.20350 1.05514 1.35258 0.90427 0.93513 1.25735 0.99961 0.96770 0.94891 1.70021 1.41547 1.47189 0.99586 0.86021 0.81077 0.79580 0.77571 1.19641 1.23357 1.16023 1.22939 0.96310 1.03827 0.96089 1.22995 0.99886 0.95779 1.04514 1.18994 0.98641 0.94138 0.95947 1.21299 0.97825 0.91911 0.97758 1.21292 0.98168 0.98679 0.98614 1.18118 0.95615 0.82913 0.96732 1.91489 1.78339 1.45810 1.96873 1.21257 1.02382 0.94607 0.98908 1.21362 0.94273 0.96010 0.98037 0.90054 0.91327 0.90892 0.83746 0.75543 0.94597 0.92341 0.92731 0.87839 0.89669 0.90476 0.88214 0.82921 0.82350 0.83053 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 8.47 71.23 0.60 -2.16 16 2 C 0.01 0.26 5.48 -18.31 -0.10 0.16 16 3 C -0.21 -5.68 9.64 23.61 0.23 -5.46 16 4 C 0.53 18.46 7.59 86.35 0.66 19.12 16 5 O -0.58 -22.89 13.31 -4.35 -0.06 -22.95 16 6 N -0.70 -25.27 5.37 -467.41 -2.51 -27.78 16 7 C 0.17 6.71 5.39 86.38 0.47 7.18 16 8 C -0.04 -1.62 0.93 -52.93 -0.05 -1.67 16 9 C -0.48 -24.93 9.04 25.60 0.23 -24.70 16 10 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 11 C 0.02 1.36 5.47 84.65 0.46 1.82 16 12 N -0.94 -56.86 13.96 21.45 0.30 -56.56 16 13 Si 0.93 43.71 24.76 68.60 1.70 45.41 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 16 H -0.24 -10.31 5.92 99.48 0.59 -9.72 16 17 C -0.15 -5.42 9.94 30.62 0.30 -5.11 16 18 C -0.19 -7.36 7.14 30.62 0.22 -7.14 16 19 C -0.08 -1.49 5.28 -20.15 -0.11 -1.59 16 20 C -0.07 -1.11 9.78 22.57 0.22 -0.89 16 21 C -0.15 -2.23 10.01 22.27 0.22 -2.01 16 22 C 0.09 1.51 7.31 22.48 0.16 1.67 16 23 F -0.15 -2.82 17.26 44.97 0.78 -2.04 16 24 C -0.15 -2.61 10.01 22.27 0.22 -2.39 16 25 C -0.08 -1.45 9.72 22.57 0.22 -1.23 16 26 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 27 H 0.07 2.11 6.14 -2.38 -0.01 2.09 16 28 H 0.07 1.44 8.07 -2.38 -0.02 1.42 16 29 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.41 13.93 8.24 -92.71 -0.76 13.17 16 31 H 0.04 1.61 7.56 -2.39 -0.02 1.59 16 32 H 0.06 2.15 8.11 -2.39 -0.02 2.13 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 36 H 0.08 3.13 6.53 -2.39 -0.02 3.11 16 37 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -64.88 349.77 4.33 -60.55 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.16 Total: 27.79 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 3.96 Total: -24.43 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -2.21 Total: -84.34 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.06 Total: -22.95 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.70 Total: 45.41 kcal Total: -64.88 4.33 -60.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.340 kcal (2) G-P(sol) polarization free energy of solvation -64.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds