Wall clock time and date at job start Tue Mar 31 2020 08:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00301 * 2 1 4 4 H 1.09001 * 109.46778 * 34.99562 * 3 2 1 5 5 C 1.53002 * 109.46658 * 275.00003 * 3 2 1 6 6 C 1.52999 * 109.47454 * 155.00038 * 3 2 1 7 7 C 1.50696 * 109.46919 * 295.00171 * 6 3 2 8 8 N 1.30052 * 126.17853 * 270.02163 * 7 6 3 9 9 O 1.21290 * 110.50908 * 179.68457 * 8 7 6 10 10 C 1.34232 * 109.68424 * 0.46580 * 9 8 7 11 11 C 1.47584 * 126.68491 * 179.79750 * 10 9 8 12 12 C 1.39615 * 120.18906 * 179.69040 * 11 10 9 13 13 C 1.37873 * 119.91664 * 180.02562 * 12 11 10 14 14 C 1.38541 * 120.31634 * 359.97438 * 13 12 11 15 15 C 1.38064 * 120.39011 * 0.03770 * 14 13 12 16 16 C 1.38790 * 120.07549 * 359.96236 * 15 14 13 17 17 O 1.35568 * 120.16373 * 179.97438 * 16 15 14 18 18 C 1.34809 * 116.99367 * 354.38949 * 17 16 15 19 19 H 1.08001 * 120.00236 * 5.05171 * 18 17 16 20 20 C 1.38680 * 119.99684 * 185.04949 * 18 17 16 21 21 N 1.31535 * 120.00010 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00114 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47215 * 90.00223 * 22 20 18 24 24 H 1.48504 * 109.47675 * 210.00236 * 22 20 18 25 25 H 1.48502 * 109.47382 * 330.00438 * 22 20 18 26 26 N 1.32225 * 106.62801 * 359.54629 * 10 9 8 27 27 H 1.09001 * 109.47032 * 60.00141 * 1 2 3 28 28 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47319 * 300.00376 * 1 2 3 30 30 H 1.00896 * 111.00044 * 236.04483 * 2 1 3 31 31 H 1.09001 * 109.47322 * 60.00017 * 5 3 2 32 32 H 1.09002 * 109.46879 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47260 * 299.99795 * 5 3 2 34 34 H 1.08990 * 109.47290 * 174.99891 * 6 3 2 35 35 H 1.09001 * 109.46920 * 54.99753 * 6 3 2 36 36 H 1.08001 * 120.04386 * 359.75073 * 12 11 10 37 37 H 1.08003 * 119.84636 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.80784 * 180.02562 * 14 13 12 39 39 H 1.08001 * 119.96549 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00137 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8925 -1.4371 6 6 3.3988 1.3791 0.6096 7 6 3.3179 0.9831 2.0613 8 7 3.1544 1.7889 3.0689 9 8 3.1237 1.1670 4.1098 10 6 3.2801 -0.1424 3.8590 11 6 3.3058 -1.2335 4.8524 12 6 3.4713 -2.5565 4.4380 13 6 3.4940 -3.5715 5.3709 14 6 3.3538 -3.2854 6.7191 15 6 3.1892 -1.9818 7.1431 16 6 3.1640 -0.9475 6.2180 17 8 3.0019 0.3331 6.6323 18 6 2.7544 0.5254 7.9435 19 1 2.7740 -0.3121 8.6252 20 6 2.4747 1.7985 8.4169 21 7 2.2336 1.9862 9.6963 22 14 2.4415 3.2470 7.2379 23 1 1.0680 3.4153 6.6989 24 1 2.8452 4.4812 7.9584 25 1 3.3850 2.9962 6.1189 26 7 3.4012 -0.2647 2.5480 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8306 -0.5261 -0.7813 31 1 1.0612 1.8871 -1.8714 32 1 2.4511 2.9103 -1.4371 33 1 2.7165 1.2516 -2.0265 34 1 3.8245 2.3791 0.5290 35 1 4.0312 0.6707 0.0745 36 1 3.5770 -2.7849 3.3878 37 1 3.6225 -4.5944 5.0491 38 1 3.3732 -4.0868 7.4428 39 1 3.0801 -1.7667 8.1958 40 1 2.0376 2.8767 10.0273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842632696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:41 Heat of formation + Delta-G solvation = 67.559065 kcal Electronic energy + Delta-G solvation = -24612.755536 eV Core-core repulsion = 21010.762672 eV Total energy + Delta-G solvation = -3601.992864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.70437 -39.37026 -37.76481 -36.78883 -35.02126 -32.99864 -32.52701 -31.32734 -29.79800 -29.22479 -27.75990 -25.47274 -25.05654 -23.91379 -22.59184 -21.48571 -21.30079 -20.25611 -18.05453 -17.77335 -17.27838 -16.62270 -15.77906 -15.61848 -15.19730 -14.87975 -14.43376 -14.31409 -14.06444 -13.89929 -13.80573 -13.33052 -12.75337 -12.66711 -12.55686 -12.39225 -12.27447 -12.08716 -11.77247 -11.75675 -11.55064 -11.23365 -11.18120 -10.89373 -10.83162 -10.72404 -10.29842 -10.18903 -9.77584 -9.58778 -8.98585 -8.49169 -8.18475 -7.51500 -6.56934 -4.22674 1.17009 2.12193 2.29960 3.02586 3.20983 3.28329 3.49932 3.54247 4.02130 4.09408 4.20534 4.35790 4.56430 4.61595 4.75055 4.86960 4.97614 5.07252 5.24763 5.28642 5.33236 5.48907 5.55550 5.56378 5.63073 5.65762 5.77442 5.81112 5.87211 5.99470 6.06403 6.27339 6.43051 6.52805 6.60956 6.87184 6.89958 6.97875 7.09352 7.28512 7.40240 7.59668 7.84333 8.76442 8.87792 9.33315 10.48132 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.005171 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.468790 B = 5413.851846 C = 6968.671994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.678 5.678 3 C 0.087 3.913 4 H 0.080 0.920 5 C -0.180 4.180 6 C -0.014 4.014 7 C 0.181 3.819 8 N -0.411 5.411 9 O 0.091 5.909 10 C 0.252 3.748 11 C -0.126 4.126 12 C -0.013 4.013 13 C -0.215 4.215 14 C -0.047 4.047 15 C -0.222 4.222 16 C 0.186 3.814 17 O -0.188 6.188 18 C -0.392 4.392 19 H 0.113 0.887 20 C 0.073 3.927 21 N -0.865 5.865 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.243 1.243 26 N -0.481 5.481 27 H 0.018 0.982 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.341 0.659 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -4.827 -16.797 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.308 5.308 3 C -0.025 4.025 4 H 0.098 0.902 5 C -0.239 4.239 6 C -0.053 4.053 7 C -0.093 4.093 8 N -0.122 5.122 9 O 0.034 5.966 10 C 0.039 3.961 11 C -0.130 4.130 12 C -0.033 4.033 13 C -0.234 4.234 14 C -0.066 4.066 15 C -0.241 4.241 16 C 0.129 3.871 17 O -0.089 6.089 18 C -0.467 4.467 19 H 0.130 0.870 20 C -0.133 4.133 21 N -0.500 5.500 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.167 1.167 26 N -0.216 5.216 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.159 0.841 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.077 -3.804 -16.504 16.937 hybrid contribution -0.369 0.864 -0.881 1.288 sum -0.292 -2.941 -17.385 17.635 Atomic orbital electron populations 1.22179 0.87844 1.01851 0.99995 1.60392 1.07537 1.12872 1.50020 1.21565 0.95510 0.90274 0.95130 0.90209 1.22471 1.02069 1.02270 0.97057 1.19895 0.97644 1.02173 0.85588 1.25245 1.00547 0.85484 0.97986 1.74555 1.23249 1.21428 0.93009 1.85562 1.65245 1.18114 1.27663 1.26168 0.94065 0.85075 0.90829 1.16343 1.20719 0.89292 0.86640 1.20732 0.93502 0.89427 0.99666 1.20611 1.11420 0.98375 0.92965 1.21042 0.94256 0.95776 0.95573 1.21210 1.10069 0.92087 1.00727 1.19059 0.92061 0.84956 0.91011 1.83594 1.75195 1.21351 1.28786 1.20859 1.48895 0.97393 0.79539 0.87013 1.24476 0.94582 0.98122 0.96124 1.69626 1.43200 1.24467 1.12714 0.86311 0.80481 0.80011 0.81341 1.19664 1.20697 1.16665 1.72065 1.23016 1.21972 1.04572 0.96307 0.91391 0.91988 0.84054 0.92455 0.91661 0.92023 0.89323 0.88962 0.85197 0.86411 0.86476 0.84085 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.50 60.06 0.63 0.96 16 2 N -0.68 -7.89 6.32 -114.01 -0.72 -8.61 16 3 C 0.09 0.98 2.58 -67.71 -0.17 0.80 16 4 H 0.08 1.05 7.80 -51.93 -0.40 0.64 16 5 C -0.18 -1.44 9.16 37.16 0.34 -1.10 16 6 C -0.01 -0.17 5.52 -27.89 -0.15 -0.33 16 7 C 0.18 3.28 7.18 -156.57 -1.12 2.16 16 8 N -0.41 -8.75 12.15 31.22 0.38 -8.37 16 9 O 0.09 2.13 10.01 -1.90 -0.02 2.11 16 10 C 0.25 5.39 7.96 -13.90 -0.11 5.28 16 11 C -0.13 -2.58 5.89 -104.82 -0.62 -3.19 16 12 C -0.01 -0.23 9.70 -39.20 -0.38 -0.61 16 13 C -0.21 -3.30 10.03 -39.60 -0.40 -3.70 16 14 C -0.05 -0.77 10.03 -39.53 -0.40 -1.17 16 15 C -0.22 -4.41 9.16 -39.44 -0.36 -4.77 16 16 C 0.19 4.17 6.66 -38.62 -0.26 3.91 16 17 O -0.19 -4.82 7.04 -17.79 -0.13 -4.95 16 18 C -0.39 -10.58 9.95 30.90 0.31 -10.27 16 19 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 20 C 0.07 2.00 5.49 -17.52 -0.10 1.90 16 21 N -0.86 -24.16 13.96 55.48 0.77 -23.39 16 22 Si 0.89 21.96 28.62 -169.99 -4.86 17.09 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.24 -6.16 7.11 56.52 0.40 -5.76 16 26 N -0.48 -9.30 11.26 -10.17 -0.11 -9.41 16 27 H 0.02 0.17 7.44 -51.93 -0.39 -0.22 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 30 H 0.34 3.29 8.56 -39.29 -0.34 2.96 16 31 H 0.06 0.44 7.45 -51.93 -0.39 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.13 2.02 7.88 -52.49 -0.41 1.61 16 37 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 38 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.14 2.88 5.64 -52.49 -0.30 2.58 16 40 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -30.04 343.85 -7.32 -37.36 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.02 Total: 3.11 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.79 Total: -10.13 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.32 Total: -49.78 kcal Atomic # 8 Polarization: -2.70 SS G_CDS: -0.14 Total: -2.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.86 Total: 17.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.04 -7.32 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842632696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.921 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds