Wall clock time and date at job start Tue Mar 31 2020 08:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00301 * 2 1 4 4 H 1.09001 * 109.46778 * 34.99562 * 3 2 1 5 5 C 1.53002 * 109.46658 * 275.00003 * 3 2 1 6 6 C 1.52999 * 109.47454 * 155.00038 * 3 2 1 7 7 C 1.50696 * 109.46919 * 295.00171 * 6 3 2 8 8 N 1.30052 * 126.17853 * 270.02163 * 7 6 3 9 9 O 1.21290 * 110.50908 * 179.68457 * 8 7 6 10 10 C 1.34232 * 109.68424 * 0.46580 * 9 8 7 11 11 C 1.47584 * 126.68491 * 179.79750 * 10 9 8 12 12 C 1.39615 * 120.18906 * 179.69040 * 11 10 9 13 13 C 1.37873 * 119.91664 * 180.02562 * 12 11 10 14 14 C 1.38541 * 120.31634 * 359.97438 * 13 12 11 15 15 C 1.38064 * 120.39011 * 0.03770 * 14 13 12 16 16 C 1.38790 * 120.07549 * 359.96236 * 15 14 13 17 17 O 1.35568 * 120.16373 * 179.97438 * 16 15 14 18 18 C 1.34809 * 116.99367 * 354.38949 * 17 16 15 19 19 H 1.08001 * 120.00236 * 5.05171 * 18 17 16 20 20 C 1.38680 * 119.99684 * 185.04949 * 18 17 16 21 21 N 1.31535 * 120.00010 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00114 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47215 * 90.00223 * 22 20 18 24 24 H 1.48504 * 109.47675 * 210.00236 * 22 20 18 25 25 H 1.48502 * 109.47382 * 330.00438 * 22 20 18 26 26 N 1.32225 * 106.62801 * 359.54629 * 10 9 8 27 27 H 1.09001 * 109.47032 * 60.00141 * 1 2 3 28 28 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47319 * 300.00376 * 1 2 3 30 30 H 1.00896 * 111.00044 * 236.04483 * 2 1 3 31 31 H 1.09001 * 109.47322 * 60.00017 * 5 3 2 32 32 H 1.09002 * 109.46879 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47260 * 299.99795 * 5 3 2 34 34 H 1.08990 * 109.47290 * 174.99891 * 6 3 2 35 35 H 1.09001 * 109.46920 * 54.99753 * 6 3 2 36 36 H 1.08001 * 120.04386 * 359.75073 * 12 11 10 37 37 H 1.08003 * 119.84636 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.80784 * 180.02562 * 14 13 12 39 39 H 1.08001 * 119.96549 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00137 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8925 -1.4371 6 6 3.3988 1.3791 0.6096 7 6 3.3179 0.9831 2.0613 8 7 3.1544 1.7889 3.0689 9 8 3.1237 1.1670 4.1098 10 6 3.2801 -0.1424 3.8590 11 6 3.3058 -1.2335 4.8524 12 6 3.4713 -2.5565 4.4380 13 6 3.4940 -3.5715 5.3709 14 6 3.3538 -3.2854 6.7191 15 6 3.1892 -1.9818 7.1431 16 6 3.1640 -0.9475 6.2180 17 8 3.0019 0.3331 6.6323 18 6 2.7544 0.5254 7.9435 19 1 2.7740 -0.3121 8.6252 20 6 2.4747 1.7985 8.4169 21 7 2.2336 1.9862 9.6963 22 14 2.4415 3.2470 7.2379 23 1 1.0680 3.4153 6.6989 24 1 2.8452 4.4812 7.9584 25 1 3.3850 2.9962 6.1189 26 7 3.4012 -0.2647 2.5480 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8306 -0.5261 -0.7813 31 1 1.0612 1.8871 -1.8714 32 1 2.4511 2.9103 -1.4371 33 1 2.7165 1.2516 -2.0265 34 1 3.8245 2.3791 0.5290 35 1 4.0312 0.6707 0.0745 36 1 3.5770 -2.7849 3.3878 37 1 3.6225 -4.5944 5.0491 38 1 3.3732 -4.0868 7.4428 39 1 3.0801 -1.7667 8.1958 40 1 2.0376 2.8767 10.0273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842632696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:40 Heat of formation + Delta-G solvation = 46.658870 kcal Electronic energy + Delta-G solvation = -24613.661836 eV Core-core repulsion = 21010.762672 eV Total energy + Delta-G solvation = -3602.899164 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.27548 -41.02491 -38.71530 -38.41450 -36.47419 -34.61992 -34.31572 -32.37062 -31.27443 -30.76223 -28.75708 -27.36668 -25.95381 -25.43252 -24.02422 -23.08190 -22.46619 -21.55735 -19.91202 -19.39380 -18.87015 -18.19298 -17.12110 -16.67958 -16.61454 -16.23739 -15.91390 -15.76765 -15.46298 -15.26703 -15.14255 -14.78799 -14.37788 -14.11330 -13.61267 -13.51506 -13.44380 -13.40612 -13.05381 -12.99011 -12.77588 -12.73468 -12.55725 -12.38063 -12.23118 -12.06025 -11.97004 -11.84739 -11.41454 -11.25261 -10.98368 -9.69247 -9.32927 -9.14322 -8.58731 -6.28076 -0.39547 0.60555 0.79251 1.24175 1.28325 1.51504 1.52358 1.95875 2.22815 2.70576 2.71913 2.86925 3.07296 3.08922 3.33000 3.83611 3.92335 4.08947 4.14014 4.24085 4.30495 4.42249 4.49834 4.51318 4.53241 4.60897 4.68317 4.76314 4.85018 4.92054 4.96477 5.03985 5.07549 5.10139 5.22122 5.31915 5.52253 5.59228 5.69907 5.81839 6.00506 6.10517 6.54392 6.76617 7.27655 7.47370 8.51296 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.005171 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.468790 B = 5413.851846 C = 6968.671994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.697 5.697 3 C 0.091 3.909 4 H 0.054 0.946 5 C -0.168 4.168 6 C -0.015 4.015 7 C 0.195 3.805 8 N -0.439 5.439 9 O 0.050 5.950 10 C 0.239 3.761 11 C -0.134 4.134 12 C -0.013 4.013 13 C -0.181 4.181 14 C -0.033 4.033 15 C -0.238 4.238 16 C 0.157 3.843 17 O -0.224 6.224 18 C -0.396 4.396 19 H 0.100 0.900 20 C 0.031 3.969 21 N -0.907 5.907 22 Si 0.942 3.058 23 H -0.276 1.276 24 H -0.265 1.265 25 H -0.262 1.262 26 N -0.473 5.473 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.354 0.646 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.153 0.847 37 H 0.169 0.831 38 H 0.160 0.840 39 H 0.127 0.873 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -7.556 -20.117 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.329 5.329 3 C -0.021 4.021 4 H 0.073 0.927 5 C -0.227 4.227 6 C -0.055 4.055 7 C -0.079 4.079 8 N -0.156 5.156 9 O 0.000 6.000 10 C 0.024 3.976 11 C -0.138 4.138 12 C -0.033 4.033 13 C -0.199 4.199 14 C -0.052 4.052 15 C -0.257 4.257 16 C 0.104 3.896 17 O -0.129 6.129 18 C -0.472 4.472 19 H 0.118 0.882 20 C -0.170 4.170 21 N -0.546 5.546 22 Si 0.766 3.234 23 H -0.202 1.202 24 H -0.190 1.190 25 H -0.186 1.186 26 N -0.208 5.208 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.174 0.826 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.170 0.830 37 H 0.187 0.813 38 H 0.178 0.822 39 H 0.144 0.856 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.727 -6.582 -19.821 20.898 hybrid contribution -0.501 1.297 -0.142 1.398 sum 0.226 -5.285 -19.963 20.652 Atomic orbital electron populations 1.22113 0.87482 1.02224 0.99650 1.60344 1.08116 1.13323 1.51134 1.21473 0.93765 0.90043 0.96778 0.92738 1.22356 1.02968 1.02839 0.94523 1.20274 0.99315 1.03596 0.82287 1.26231 0.97361 0.84688 0.99577 1.74563 1.25409 1.22307 0.93341 1.85541 1.66486 1.19032 1.28911 1.26583 0.94207 0.84943 0.91843 1.16793 1.20466 0.90705 0.85842 1.21122 0.92660 0.88098 1.01392 1.21236 1.06644 1.00196 0.91856 1.21532 0.91536 0.94923 0.97214 1.21320 1.11087 0.93496 0.99811 1.19611 0.92785 0.84800 0.92444 1.83582 1.78527 1.23196 1.27564 1.20824 1.48789 0.97124 0.80453 0.88234 1.24962 0.95204 0.99757 0.97066 1.69669 1.46402 1.24985 1.13537 0.85615 0.79508 0.78837 0.79443 1.20163 1.19007 1.18576 1.72093 1.22774 1.22467 1.03488 0.94353 0.90649 0.94562 0.82587 0.91872 0.90953 0.90268 0.87738 0.86775 0.82968 0.81310 0.82248 0.85564 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.50 127.69 1.34 2.03 16 2 N -0.70 -14.77 6.32 -514.61 -3.25 -18.02 16 3 C 0.09 1.88 2.58 44.92 0.12 2.00 16 4 H 0.05 1.41 7.80 -2.39 -0.02 1.39 16 5 C -0.17 -2.17 9.16 71.98 0.66 -1.51 16 6 C -0.02 -0.36 5.52 29.85 0.16 -0.20 16 7 C 0.19 6.96 7.18 138.53 0.99 7.95 16 8 N -0.44 -19.12 12.15 -58.46 -0.71 -19.83 16 9 O 0.05 2.44 10.01 86.99 0.87 3.31 16 10 C 0.24 10.28 7.96 87.22 0.69 10.97 16 11 C -0.13 -5.43 5.89 -19.99 -0.12 -5.55 16 12 C -0.01 -0.41 9.70 22.52 0.22 -0.19 16 13 C -0.18 -4.58 10.03 22.26 0.22 -4.36 16 14 C -0.03 -0.96 10.03 22.30 0.22 -0.73 16 15 C -0.24 -9.41 9.16 22.36 0.20 -9.20 16 16 C 0.16 7.20 6.66 22.89 0.15 7.35 16 17 O -0.22 -12.14 7.04 -2.87 -0.02 -12.16 16 18 C -0.40 -22.69 9.95 67.93 0.68 -22.01 16 19 H 0.10 5.73 5.44 -2.91 -0.02 5.71 16 20 C 0.03 1.80 5.49 84.84 0.47 2.26 16 21 N -0.91 -53.24 13.96 21.62 0.30 -52.94 16 22 Si 0.94 47.91 28.62 68.60 1.96 49.87 16 23 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.26 -13.91 7.11 99.48 0.71 -13.21 16 26 N -0.47 -17.79 11.26 -302.64 -3.41 -21.20 16 27 H 0.04 0.60 7.44 -2.39 -0.02 0.58 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 0.89 8.05 -2.39 -0.02 0.87 16 30 H 0.35 5.75 8.56 -89.70 -0.77 4.98 16 31 H 0.06 0.77 7.45 -2.39 -0.02 0.75 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.78 8.13 -2.39 -0.02 0.76 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.15 4.06 7.88 -2.91 -0.02 4.04 16 37 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.13 5.35 5.64 -2.91 -0.02 5.34 16 40 H 0.29 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -70.82 343.85 2.07 -68.75 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.31 Total: 13.39 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 6.02 Total: -11.19 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -7.07 Total: -111.98 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.85 Total: -8.85 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.96 Total: 49.87 kcal Total: -70.82 2.07 -68.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842632696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.411 kcal (2) G-P(sol) polarization free energy of solvation -70.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds