Wall clock time and date at job start Tue Mar 31 2020 08:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.47014 * 2 1 4 4 N 1.46489 * 109.47351 * 239.99761 * 2 1 3 5 5 C 1.34786 * 120.00029 * 85.00019 * 4 2 1 6 6 O 1.21692 * 119.99717 * 359.97438 * 5 4 2 7 7 C 1.46372 * 119.99976 * 180.02562 * 5 4 2 8 8 H 1.07994 * 120.00092 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99671 * 180.02562 * 7 5 4 10 10 N 1.30675 * 120.00141 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 119.99854 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47097 * 89.99423 * 11 9 7 13 13 H 1.48498 * 109.47074 * 209.99602 * 11 9 7 14 14 H 1.48501 * 109.47095 * 329.99434 * 11 9 7 15 15 C 1.50699 * 109.47197 * 119.99669 * 2 1 3 16 16 C 1.38282 * 119.92888 * 80.23124 * 15 2 1 17 17 C 1.38112 * 120.06777 * 180.27710 * 16 15 2 18 18 C 1.38867 * 119.93049 * 359.49524 * 17 16 15 19 19 N 1.39954 * 120.06797 * 180.23234 * 18 17 16 20 20 C 1.47047 * 125.41033 * 354.24285 * 19 18 17 21 21 C 1.54109 * 103.86113 * 180.02562 * 20 19 18 22 22 N 1.47051 * 103.86039 * 359.97438 * 21 20 19 23 23 C 1.33950 * 125.40450 * 173.93815 * 19 18 17 24 24 O 1.21585 * 123.04834 * 0.02562 * 23 19 18 25 25 C 1.38868 * 119.86381 * 0.25053 * 18 17 16 26 26 C 1.38113 * 119.92423 * 0.02562 * 25 18 17 27 27 H 1.09000 * 109.47166 * 300.00041 * 1 2 3 28 28 H 1.09002 * 109.46941 * 59.99936 * 1 2 3 29 29 H 1.08994 * 109.46550 * 180.02562 * 1 2 3 30 30 H 0.97003 * 120.00264 * 264.99927 * 4 2 1 31 31 H 0.96992 * 119.99734 * 180.02562 * 10 9 7 32 32 H 1.07998 * 119.96748 * 0.02663 * 16 15 2 33 33 H 1.08005 * 120.03485 * 179.77152 * 17 16 15 34 34 H 1.09005 * 110.55048 * 298.59107 * 20 19 18 35 35 H 1.08993 * 110.55129 * 61.26401 * 20 19 18 36 36 H 1.08996 * 110.54638 * 118.59760 * 21 20 19 37 37 H 1.08995 * 110.54457 * 241.40628 * 21 20 19 38 38 H 0.97001 * 125.40750 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.03633 * 180.02562 * 25 18 17 40 40 H 1.08000 * 119.96611 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1472 -0.0183 -2.3571 6 8 1.8573 1.1624 -2.4119 7 6 2.6346 -0.7084 -3.5523 8 1 2.8915 -1.7563 -3.5038 9 6 2.7689 -0.0096 -4.7586 10 7 2.4585 1.2584 -4.8172 11 14 3.3916 -0.8903 -6.2838 12 1 2.2417 -1.4613 -7.0298 13 1 4.1149 0.0738 -7.1513 14 1 4.3134 -1.9833 -5.8826 15 6 2.0324 -0.7103 1.2305 16 6 2.0707 -2.0923 1.2621 17 6 2.5252 -2.7463 2.3904 18 6 2.9538 -2.0145 3.4900 19 7 3.4195 -2.6743 4.6331 20 6 3.3957 -4.1290 4.8463 21 6 4.0171 -4.3073 6.2453 22 7 4.3256 -2.9341 6.6713 23 6 3.9628 -2.0812 5.7042 24 8 4.1092 -0.8775 5.7926 25 6 2.9191 -0.6268 3.4533 26 6 2.4581 0.0212 2.3241 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 2.2492 -1.6318 -1.1525 31 1 2.5512 1.7422 -5.6527 32 1 1.7411 -2.6608 0.4050 33 1 2.5514 -3.8257 2.4159 34 1 2.3712 -4.5010 4.8330 35 1 3.9957 -4.6363 4.0909 36 1 3.3012 -4.7679 6.9260 37 1 4.9281 -4.9029 6.1861 38 1 4.7306 -2.6856 7.5170 39 1 3.2522 -0.0549 4.3067 40 1 2.4312 1.1005 2.2946 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843983846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:41 Heat of formation + Delta-G solvation = -20.167232 kcal Electronic energy + Delta-G solvation = -23888.103089 eV Core-core repulsion = 20282.306127 eV Total energy + Delta-G solvation = -3605.796961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70719 -39.23522 -37.28053 -36.80789 -35.07116 -33.38368 -32.30092 -30.88387 -30.16423 -29.34839 -28.15468 -26.05793 -24.06978 -23.95189 -21.93588 -21.55555 -20.32451 -19.13344 -18.29407 -17.50495 -17.07751 -16.84620 -15.95964 -15.43927 -14.93919 -14.85090 -14.43601 -14.25837 -14.10739 -13.75095 -13.61844 -13.32703 -13.24554 -13.11855 -12.70154 -12.49797 -12.28511 -12.16339 -11.56279 -11.32914 -11.24451 -10.96014 -10.88494 -10.44535 -10.32868 -10.22225 -10.12832 -9.96158 -9.59655 -8.82267 -8.77986 -7.79924 -7.53228 -7.46274 -6.14559 -4.60080 1.42679 1.57932 2.12564 2.83518 3.16306 3.23058 3.26486 3.42044 3.85342 3.95610 4.14276 4.40991 4.50359 4.63240 4.86474 4.91343 4.95247 5.07946 5.16887 5.17335 5.33700 5.58676 5.63749 5.78211 5.83499 5.99526 6.18011 6.19821 6.27560 6.43394 6.47661 6.55969 6.59020 6.74873 6.85182 7.00914 7.14736 7.23600 7.46938 7.97632 8.15976 8.19439 8.37520 9.06332 9.58716 10.64414 10.83511 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.002848 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.431628 B = 9828.688955 C =10303.326895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.190 3.810 3 H 0.083 0.917 4 N -0.760 5.760 5 C 0.557 3.443 6 O -0.580 6.580 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.095 4.095 16 C -0.084 4.084 17 C -0.156 4.156 18 C 0.172 3.828 19 N -0.568 5.568 20 C 0.085 3.915 21 C 0.093 3.907 22 N -0.740 5.740 23 C 0.698 3.302 24 O -0.566 6.566 25 C -0.151 4.151 26 C -0.084 4.084 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.378 0.622 31 H 0.268 0.732 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.432 0.568 39 H 0.154 0.846 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -14.844 21.082 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.083 3.917 3 H 0.101 0.899 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.463 6.463 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.096 4.096 16 C -0.103 4.103 17 C -0.177 4.177 18 C 0.079 3.921 19 N -0.295 5.295 20 C -0.038 4.038 21 C -0.032 4.032 22 N -0.402 5.402 23 C 0.399 3.601 24 O -0.443 6.443 25 C -0.171 4.171 26 C -0.103 4.103 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.211 0.789 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.274 0.726 39 H 0.172 0.828 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.178 -13.145 20.899 24.718 hybrid contribution 0.625 -1.135 -0.333 1.338 sum 1.803 -14.281 20.566 25.103 Atomic orbital electron populations 1.22149 0.96021 1.01181 1.01651 1.19382 0.92968 0.96759 0.82560 0.89857 1.46282 1.73193 1.12776 1.09306 1.18202 0.77751 0.86398 0.81605 1.90596 1.54753 1.16402 1.84504 1.20878 1.46897 0.97108 0.93372 0.91531 1.25700 0.93368 0.94450 0.99675 1.70021 1.35357 1.08154 1.26158 0.86392 0.79310 0.79781 0.81366 1.19795 1.20505 1.18959 1.20276 0.99262 0.93873 0.96202 1.20739 0.98497 0.94030 0.97016 1.20581 1.05109 0.99177 0.92795 1.17377 0.98618 0.91492 0.84639 1.44460 1.61467 1.07385 1.16223 1.22556 1.03078 0.81296 0.96912 1.22388 1.01198 0.84985 0.94653 1.45094 1.67920 1.06837 1.20369 1.15859 0.78494 0.85181 0.80564 1.90883 1.61090 1.11927 1.80420 1.21534 1.02486 0.92451 1.00621 1.20975 0.97070 1.00131 0.92087 0.93182 0.91579 0.93304 0.78919 0.92162 0.85399 0.86070 0.89079 0.89057 0.89507 0.89528 0.72585 0.82831 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.46 37.16 0.35 -2.39 16 2 C 0.19 3.73 2.77 -69.09 -0.19 3.54 16 3 H 0.08 1.85 7.43 -51.92 -0.39 1.47 16 4 N -0.76 -17.09 5.02 -56.34 -0.28 -17.37 16 5 C 0.56 15.86 7.71 -12.98 -0.10 15.76 16 6 O -0.58 -18.76 14.68 5.20 0.08 -18.69 16 7 C -0.55 -15.48 9.54 -35.63 -0.34 -15.82 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.09 2.46 5.50 -17.36 -0.10 2.37 16 10 N -0.77 -23.22 11.83 55.55 0.66 -22.57 16 11 Si 0.91 20.27 29.56 -169.99 -5.02 15.24 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 15 C -0.09 -1.56 4.96 -104.59 -0.52 -2.07 16 16 C -0.08 -1.20 9.05 -39.61 -0.36 -1.56 16 17 C -0.16 -1.93 9.49 -39.39 -0.37 -2.30 16 18 C 0.17 2.33 6.62 -83.68 -0.55 1.78 16 19 N -0.57 -6.35 3.16 -118.24 -0.37 -6.73 16 20 C 0.08 0.50 6.49 -3.16 -0.02 0.48 16 21 C 0.09 0.36 8.06 -3.16 -0.03 0.33 16 22 N -0.74 -5.44 6.37 -64.70 -0.41 -5.85 16 23 C 0.70 8.55 8.52 -88.39 -0.75 7.80 16 24 O -0.57 -9.20 14.76 5.29 0.08 -9.12 16 25 C -0.15 -2.32 9.29 -39.39 -0.37 -2.69 16 26 C -0.08 -1.32 9.66 -39.61 -0.38 -1.70 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.38 7.51 6.83 -40.82 -0.28 7.23 16 31 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 32 H 0.13 1.70 6.89 -52.49 -0.36 1.34 16 33 H 0.12 1.12 7.29 -52.48 -0.38 0.74 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 36 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.43 2.33 8.96 -40.82 -0.37 1.97 16 39 H 0.15 2.53 5.29 -52.49 -0.28 2.25 16 40 H 0.13 1.89 8.03 -52.49 -0.42 1.46 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -38.20 337.66 -8.90 -47.10 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.98 Total: 9.35 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.73 Total: 3.53 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.41 Total: -52.51 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: 0.15 Total: -27.81 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -38.20 -8.90 -47.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843983846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.932 kcal (2) G-P(sol) polarization free energy of solvation -38.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds