Wall clock time and date at job start Tue Mar 31 2020 08:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.47014 * 2 1 4 4 N 1.46489 * 109.47351 * 239.99761 * 2 1 3 5 5 C 1.34786 * 120.00029 * 85.00019 * 4 2 1 6 6 O 1.21692 * 119.99717 * 359.97438 * 5 4 2 7 7 C 1.46372 * 119.99976 * 180.02562 * 5 4 2 8 8 H 1.07994 * 120.00092 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99671 * 180.02562 * 7 5 4 10 10 N 1.30675 * 120.00141 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 119.99854 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47097 * 89.99423 * 11 9 7 13 13 H 1.48498 * 109.47074 * 209.99602 * 11 9 7 14 14 H 1.48501 * 109.47095 * 329.99434 * 11 9 7 15 15 C 1.50699 * 109.47197 * 119.99669 * 2 1 3 16 16 C 1.38282 * 119.92888 * 80.23124 * 15 2 1 17 17 C 1.38112 * 120.06777 * 180.27710 * 16 15 2 18 18 C 1.38867 * 119.93049 * 359.49524 * 17 16 15 19 19 N 1.39954 * 120.06797 * 180.23234 * 18 17 16 20 20 C 1.47047 * 125.41033 * 354.24285 * 19 18 17 21 21 C 1.54109 * 103.86113 * 180.02562 * 20 19 18 22 22 N 1.47051 * 103.86039 * 359.97438 * 21 20 19 23 23 C 1.33950 * 125.40450 * 173.93815 * 19 18 17 24 24 O 1.21585 * 123.04834 * 0.02562 * 23 19 18 25 25 C 1.38868 * 119.86381 * 0.25053 * 18 17 16 26 26 C 1.38113 * 119.92423 * 0.02562 * 25 18 17 27 27 H 1.09000 * 109.47166 * 300.00041 * 1 2 3 28 28 H 1.09002 * 109.46941 * 59.99936 * 1 2 3 29 29 H 1.08994 * 109.46550 * 180.02562 * 1 2 3 30 30 H 0.97003 * 120.00264 * 264.99927 * 4 2 1 31 31 H 0.96992 * 119.99734 * 180.02562 * 10 9 7 32 32 H 1.07998 * 119.96748 * 0.02663 * 16 15 2 33 33 H 1.08005 * 120.03485 * 179.77152 * 17 16 15 34 34 H 1.09005 * 110.55048 * 298.59107 * 20 19 18 35 35 H 1.08993 * 110.55129 * 61.26401 * 20 19 18 36 36 H 1.08996 * 110.54638 * 118.59760 * 21 20 19 37 37 H 1.08995 * 110.54457 * 241.40628 * 21 20 19 38 38 H 0.97001 * 125.40750 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.03633 * 180.02562 * 25 18 17 40 40 H 1.08000 * 119.96611 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1472 -0.0183 -2.3571 6 8 1.8573 1.1624 -2.4119 7 6 2.6346 -0.7084 -3.5523 8 1 2.8915 -1.7563 -3.5038 9 6 2.7689 -0.0096 -4.7586 10 7 2.4585 1.2584 -4.8172 11 14 3.3916 -0.8903 -6.2838 12 1 2.2417 -1.4613 -7.0298 13 1 4.1149 0.0738 -7.1513 14 1 4.3134 -1.9833 -5.8826 15 6 2.0324 -0.7103 1.2305 16 6 2.0707 -2.0923 1.2621 17 6 2.5252 -2.7463 2.3904 18 6 2.9538 -2.0145 3.4900 19 7 3.4195 -2.6743 4.6331 20 6 3.3957 -4.1290 4.8463 21 6 4.0171 -4.3073 6.2453 22 7 4.3256 -2.9341 6.6713 23 6 3.9628 -2.0812 5.7042 24 8 4.1092 -0.8775 5.7926 25 6 2.9191 -0.6268 3.4533 26 6 2.4581 0.0212 2.3241 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 2.2492 -1.6318 -1.1525 31 1 2.5512 1.7422 -5.6527 32 1 1.7411 -2.6608 0.4050 33 1 2.5514 -3.8257 2.4159 34 1 2.3712 -4.5010 4.8330 35 1 3.9957 -4.6363 4.0909 36 1 3.3012 -4.7679 6.9260 37 1 4.9281 -4.9029 6.1861 38 1 4.7306 -2.6856 7.5170 39 1 3.2522 -0.0549 4.3067 40 1 2.4312 1.1005 2.2946 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843983846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:41 Heat of formation + Delta-G solvation = -49.417577 kcal Electronic energy + Delta-G solvation = -23889.371479 eV Core-core repulsion = 20282.306127 eV Total energy + Delta-G solvation = -3607.065351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49777 -40.51953 -39.12212 -37.69716 -36.46534 -34.80326 -34.33097 -32.07209 -31.67622 -30.17151 -29.25645 -28.15820 -25.20109 -24.76109 -23.14421 -22.69751 -21.60736 -20.82357 -19.40560 -19.06965 -17.79870 -17.68967 -17.48228 -17.18364 -16.34264 -15.99641 -15.69334 -15.35654 -15.10241 -14.96239 -14.85937 -14.74072 -14.32330 -14.30072 -14.19729 -13.88268 -13.33562 -13.26257 -13.10408 -12.89857 -12.73406 -12.59095 -12.50477 -12.39505 -11.99478 -11.76471 -11.21413 -11.03802 -10.90623 -10.21114 -9.91660 -9.81970 -9.45450 -8.77747 -8.25616 -6.82405 0.28273 0.43746 1.37477 1.41662 1.43730 1.58747 1.92981 2.26877 2.51007 2.82485 2.88745 3.19105 3.46755 3.66055 3.72287 3.80452 4.05180 4.13851 4.17847 4.40028 4.45784 4.49261 4.56804 4.64538 4.70230 4.81257 4.89748 4.91290 5.01177 5.13881 5.23455 5.34538 5.38570 5.43015 5.56583 5.69390 5.92214 6.03549 6.13977 6.27951 6.33703 6.39033 6.89774 7.37063 7.60252 8.53856 8.71460 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.002848 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.431628 B = 9828.688955 C =10303.326895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.192 3.808 3 H 0.045 0.955 4 N -0.746 5.746 5 C 0.540 3.460 6 O -0.632 6.632 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.027 3.973 10 N -0.824 5.824 11 Si 0.999 3.001 12 H -0.260 1.260 13 H -0.276 1.276 14 H -0.248 1.248 15 C -0.112 4.112 16 C -0.081 4.081 17 C -0.139 4.139 18 C 0.177 3.823 19 N -0.573 5.573 20 C 0.073 3.927 21 C 0.094 3.906 22 N -0.727 5.727 23 C 0.683 3.317 24 O -0.620 6.620 25 C -0.169 4.169 26 C -0.092 4.092 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.394 0.606 31 H 0.273 0.727 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.440 0.560 39 H 0.138 0.862 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -19.678 21.747 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.086 3.914 3 H 0.063 0.937 4 N -0.401 5.401 5 C 0.344 3.656 6 O -0.519 6.519 7 C -0.609 4.609 8 H 0.107 0.893 9 C -0.188 4.188 10 N -0.453 5.453 11 Si 0.818 3.182 12 H -0.185 1.185 13 H -0.201 1.201 14 H -0.171 1.171 15 C -0.114 4.114 16 C -0.100 4.100 17 C -0.160 4.160 18 C 0.083 3.917 19 N -0.300 5.300 20 C -0.048 4.048 21 C -0.029 4.029 22 N -0.388 5.388 23 C 0.383 3.617 24 O -0.501 6.501 25 C -0.189 4.189 26 C -0.111 4.111 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.229 0.771 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.284 0.716 39 H 0.156 0.844 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.802 -18.096 21.654 28.277 hybrid contribution 0.452 0.305 -0.345 0.645 sum 2.254 -17.791 21.309 27.851 Atomic orbital electron populations 1.22031 0.94779 1.02309 1.00862 1.19346 0.93955 0.95066 0.83038 0.93711 1.45933 1.72084 1.13295 1.08745 1.18602 0.77517 0.86044 0.83420 1.90553 1.56945 1.18637 1.85743 1.21435 1.47215 0.98300 0.93982 0.89311 1.26999 0.92842 0.95127 1.03816 1.70202 1.36858 1.10608 1.27680 0.85008 0.79036 0.78473 0.75684 1.18501 1.20077 1.17093 1.19918 1.01755 0.94960 0.94733 1.20911 0.98003 0.92850 0.98254 1.20872 1.03023 1.01055 0.91032 1.17512 0.97328 0.90958 0.85927 1.44590 1.60630 1.09673 1.15066 1.23056 1.05126 0.77937 0.98652 1.22743 1.03144 0.83074 0.93960 1.45114 1.66419 1.07802 1.19513 1.16277 0.78720 0.85008 0.81653 1.90845 1.63154 1.14526 1.81544 1.21454 1.03617 0.93919 0.99920 1.20928 0.97642 1.00060 0.92500 0.90965 0.95281 0.91089 0.77127 0.91688 0.83985 0.81771 0.86971 0.87160 0.86637 0.86876 0.71633 0.84437 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.46 71.98 0.68 -4.57 16 2 C 0.19 7.87 2.77 44.25 0.12 7.99 16 3 H 0.04 2.16 7.43 -2.38 -0.02 2.15 16 4 N -0.75 -34.23 5.02 -450.39 -2.26 -36.49 16 5 C 0.54 31.90 7.71 86.36 0.67 32.57 16 6 O -0.63 -43.27 14.68 -4.32 -0.06 -43.33 16 7 C -0.57 -32.78 9.54 24.83 0.24 -32.55 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.03 1.52 5.50 85.30 0.47 1.99 16 10 N -0.82 -51.44 11.83 21.84 0.26 -51.18 16 11 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 13 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 14 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 15 C -0.11 -3.71 4.96 -19.84 -0.10 -3.81 16 16 C -0.08 -2.15 9.05 22.25 0.20 -1.95 16 17 C -0.14 -2.97 9.49 22.39 0.21 -2.76 16 18 C 0.18 4.53 6.62 38.15 0.25 4.78 16 19 N -0.57 -11.43 3.16 -646.73 -2.04 -13.47 16 20 C 0.07 0.52 6.49 86.65 0.56 1.09 16 21 C 0.09 0.29 8.06 86.65 0.70 0.99 16 22 N -0.73 -8.85 6.37 -477.34 -3.04 -11.89 16 23 C 0.68 15.98 8.52 179.57 1.53 17.51 16 24 O -0.62 -20.75 14.76 -3.98 -0.06 -20.81 16 25 C -0.17 -5.32 9.29 22.39 0.21 -5.12 16 26 C -0.09 -3.05 9.66 22.25 0.21 -2.83 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.39 15.38 6.83 -92.71 -0.63 14.74 16 31 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 32 H 0.14 3.32 6.89 -2.91 -0.02 3.30 16 33 H 0.16 2.09 7.29 -2.91 -0.02 2.07 16 34 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.11 0.42 8.11 -2.39 -0.02 0.40 16 36 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.44 3.85 8.96 -92.71 -0.83 3.02 16 39 H 0.14 4.84 5.29 -2.91 -0.02 4.83 16 40 H 0.12 3.95 8.03 -2.91 -0.02 3.93 16 Total: -1.00 -90.16 337.66 0.41 -89.75 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.37 Total: 30.75 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.96 Total: 13.33 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -7.09 Total: -113.04 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -0.12 Total: -64.14 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -90.16 0.41 -89.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843983846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.337 kcal (2) G-P(sol) polarization free energy of solvation -90.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds