Wall clock time and date at job start Tue Mar 31 2020 08:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47299 * 2 1 4 4 N 1.46498 * 109.47507 * 120.00502 * 2 1 3 5 5 C 1.34778 * 120.00103 * 275.00416 * 4 2 1 6 6 O 1.21692 * 119.99857 * 359.97438 * 5 4 2 7 7 C 1.46364 * 120.00319 * 179.97438 * 5 4 2 8 8 H 1.08001 * 120.00048 * 359.71622 * 7 5 4 9 9 C 1.40049 * 120.00346 * 180.02562 * 7 5 4 10 10 N 1.30673 * 119.99809 * 359.71980 * 9 7 5 11 11 Si 1.86800 * 120.00488 * 179.72344 * 9 7 5 12 12 H 1.48499 * 109.46880 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47224 * 119.99501 * 11 9 7 14 14 H 1.48501 * 109.47225 * 239.99939 * 11 9 7 15 15 C 1.50703 * 109.47122 * 240.00479 * 2 1 3 16 16 C 1.38282 * 119.92839 * 279.71873 * 15 2 1 17 17 C 1.38119 * 120.07060 * 179.76265 * 16 15 2 18 18 C 1.38871 * 119.92550 * 0.49594 * 17 16 15 19 19 N 1.39946 * 120.06857 * 179.78602 * 18 17 16 20 20 C 1.47056 * 125.40892 * 174.22155 * 19 18 17 21 21 C 1.54106 * 103.85821 * 179.97438 * 20 19 18 22 22 N 1.47052 * 103.86293 * 0.02562 * 21 20 19 23 23 C 1.33949 * 125.40587 * 353.91497 * 19 18 17 24 24 O 1.21580 * 123.04659 * 0.02562 * 23 19 18 25 25 C 1.38871 * 119.86183 * 359.76447 * 18 17 16 26 26 C 1.38117 * 119.92649 * 359.97438 * 25 18 17 27 27 H 1.09002 * 109.47161 * 60.00029 * 1 2 3 28 28 H 1.09004 * 109.46838 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46997 * 299.99232 * 1 2 3 30 30 H 0.97004 * 120.00262 * 94.99627 * 4 2 1 31 31 H 0.97000 * 120.00325 * 180.02562 * 10 9 7 32 32 H 1.07997 * 119.96506 * 0.02562 * 16 15 2 33 33 H 1.07988 * 120.03851 * 180.25575 * 17 16 15 34 34 H 1.08997 * 110.54651 * 298.59287 * 20 19 18 35 35 H 1.08999 * 110.54653 * 61.26024 * 20 19 18 36 36 H 1.09008 * 110.54286 * 118.59609 * 21 20 19 37 37 H 1.08993 * 110.54714 * 241.40423 * 21 20 19 38 38 H 0.97006 * 125.40529 * 179.97438 * 22 21 20 39 39 H 1.07994 * 120.03256 * 179.97438 * 25 18 17 40 40 H 1.08000 * 119.96308 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8580 1.1624 2.4118 7 6 2.6345 -0.7086 3.5523 8 1 2.8868 -1.7577 3.5049 9 6 2.7678 -0.0102 4.7589 10 7 2.4621 1.2589 4.8163 11 14 3.3825 -0.8929 6.2861 12 1 3.6571 -2.3151 5.9590 13 1 4.6301 -0.2447 6.7640 14 1 2.3485 -0.8208 7.3495 15 6 2.0323 -0.7103 -1.2305 16 6 2.0716 -2.0922 -1.2618 17 6 2.5268 -2.7463 -2.3898 18 6 2.9551 -2.0145 -3.4896 19 7 3.4211 -2.6741 -4.6325 20 6 3.7878 -2.0258 -5.9005 21 6 4.2266 -3.1972 -6.8006 22 7 4.0599 -4.3811 -5.9444 23 6 3.6095 -3.9957 -4.7432 24 8 3.3878 -4.7752 -3.8369 25 6 2.9195 -0.6267 -3.4531 26 6 2.4581 0.0212 -2.3240 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.2491 -1.6319 1.1525 31 1 2.5547 1.7428 5.6519 32 1 1.7419 -2.6607 -0.4047 33 1 2.5534 -3.8256 -2.4152 34 1 2.9275 -1.5134 -6.3310 35 1 4.6113 -1.3279 -5.7492 36 1 3.5840 -3.2667 -7.6783 37 1 5.2693 -3.0824 -7.0966 38 1 4.2499 -5.2955 -6.2065 39 1 3.2522 -0.0548 -4.3066 40 1 2.4297 1.1005 -2.2951 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843983860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:43 Heat of formation + Delta-G solvation = -49.256178 kcal Electronic energy + Delta-G solvation = -23911.823210 eV Core-core repulsion = 20304.764857 eV Total energy + Delta-G solvation = -3607.058353 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49500 -40.51459 -39.12964 -37.69386 -36.46179 -34.81267 -34.33333 -32.08150 -31.64792 -30.18455 -29.26074 -28.17571 -25.18891 -24.74039 -23.10683 -22.82753 -21.51602 -20.81390 -19.44529 -19.03003 -17.82837 -17.69114 -17.58211 -17.00352 -16.57404 -15.89249 -15.54101 -15.42479 -15.15166 -14.90499 -14.85973 -14.81817 -14.30135 -14.29497 -14.21154 -13.88613 -13.33616 -13.26712 -13.10699 -12.91454 -12.75103 -12.66664 -12.59761 -12.14272 -11.99403 -11.89155 -11.19645 -11.01447 -10.93756 -10.20769 -9.91260 -9.82655 -9.46395 -8.77393 -8.27827 -6.84380 0.28971 0.44465 1.37730 1.39617 1.39687 1.57554 1.93612 2.25275 2.48687 2.82866 2.88920 3.19186 3.46543 3.63914 3.72431 3.81048 4.05201 4.13468 4.18060 4.39348 4.46544 4.51001 4.54656 4.65285 4.70363 4.80230 4.89546 4.90806 5.01931 5.13359 5.24973 5.32734 5.38534 5.44880 5.57175 5.68402 5.90428 6.04449 6.14177 6.23876 6.34390 6.39345 6.88001 7.37544 7.55457 8.51191 8.69035 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024606 B = 0.002927 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.657754 B = 9564.824693 C =10220.570622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.191 3.809 3 H 0.057 0.943 4 N -0.750 5.750 5 C 0.542 3.458 6 O -0.627 6.627 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.030 3.970 10 N -0.820 5.820 11 Si 0.997 3.003 12 H -0.251 1.251 13 H -0.267 1.267 14 H -0.267 1.267 15 C -0.113 4.113 16 C -0.088 4.088 17 C -0.168 4.168 18 C 0.177 3.823 19 N -0.574 5.574 20 C 0.073 3.927 21 C 0.094 3.906 22 N -0.727 5.727 23 C 0.683 3.317 24 O -0.619 6.619 25 C -0.141 4.141 26 C -0.084 4.084 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.390 0.610 31 H 0.274 0.726 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.440 0.560 39 H 0.164 0.836 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -7.727 -27.568 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.086 3.914 3 H 0.075 0.925 4 N -0.405 5.405 5 C 0.346 3.654 6 O -0.515 6.515 7 C -0.612 4.612 8 H 0.100 0.900 9 C -0.185 4.185 10 N -0.450 5.450 11 Si 0.816 3.184 12 H -0.174 1.174 13 H -0.192 1.192 14 H -0.192 1.192 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.189 4.189 18 C 0.082 3.918 19 N -0.300 5.300 20 C -0.048 4.048 21 C -0.029 4.029 22 N -0.389 5.389 23 C 0.383 3.617 24 O -0.500 6.500 25 C -0.161 4.161 26 C -0.103 4.103 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.224 0.776 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.284 0.716 39 H 0.181 0.819 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.744 -7.053 -27.017 28.173 hybrid contribution 0.234 -1.003 0.940 1.395 sum 3.978 -8.056 -26.077 27.581 Atomic orbital electron populations 1.22046 0.95049 1.01794 1.01230 1.19418 0.93806 0.95376 0.82801 0.92453 1.46026 1.72078 1.13210 1.09151 1.18513 0.77495 0.86059 0.83286 1.90539 1.56920 1.18295 1.85708 1.21452 1.47445 0.98043 0.94297 0.90002 1.26931 0.92788 0.95189 1.03611 1.70185 1.36653 1.10397 1.27736 0.84991 0.78282 0.79227 0.75895 1.17399 1.19182 1.19186 1.19952 1.01943 0.93940 0.95671 1.20821 0.98549 0.93713 0.97577 1.21468 1.02520 1.01724 0.93164 1.17520 0.97068 0.91739 0.85446 1.44591 1.65194 1.06566 1.13638 1.23050 1.03710 0.97304 0.80692 1.22740 1.05109 0.81200 0.93866 1.45116 1.70118 1.11717 1.11924 1.16276 0.78718 0.82516 0.84155 1.90849 1.59973 1.56264 1.42876 1.20857 1.04263 0.90829 1.00188 1.21017 0.96761 1.00675 0.91820 0.90143 0.92230 0.95204 0.77625 0.91564 0.86147 0.84439 0.86985 0.87228 0.86648 0.86880 0.71629 0.81856 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 9.46 71.98 0.68 -4.66 16 2 C 0.19 7.81 2.78 44.25 0.12 7.93 16 3 H 0.06 2.62 7.43 -2.38 -0.02 2.60 16 4 N -0.75 -35.91 5.02 -450.40 -2.26 -38.17 16 5 C 0.54 32.59 7.71 86.36 0.67 33.26 16 6 O -0.63 -42.77 14.68 -4.32 -0.06 -42.83 16 7 C -0.58 -34.03 9.54 24.83 0.24 -33.79 16 8 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 9 C 0.03 1.72 5.50 85.30 0.47 2.18 16 10 N -0.82 -51.31 11.83 21.84 0.26 -51.05 16 11 Si 1.00 42.54 29.56 68.60 2.03 44.57 16 12 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 14 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 15 C -0.11 -3.74 4.96 -19.84 -0.10 -3.84 16 16 C -0.09 -2.86 9.05 22.25 0.20 -2.66 16 17 C -0.17 -5.29 9.29 22.39 0.21 -5.09 16 18 C 0.18 4.52 6.62 38.15 0.25 4.77 16 19 N -0.57 -11.47 3.16 -646.73 -2.04 -13.51 16 20 C 0.07 0.53 6.49 86.65 0.56 1.09 16 21 C 0.09 0.30 8.06 86.65 0.70 1.00 16 22 N -0.73 -8.92 6.37 -477.34 -3.04 -11.96 16 23 C 0.68 16.04 8.52 179.57 1.53 17.57 16 24 O -0.62 -20.78 14.76 -3.97 -0.06 -20.84 16 25 C -0.14 -3.02 9.49 22.39 0.21 -2.80 16 26 C -0.08 -2.22 9.66 22.25 0.21 -2.01 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.39 16.89 6.83 -92.71 -0.63 16.26 16 31 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 32 H 0.12 3.94 6.89 -2.91 -0.02 3.92 16 33 H 0.14 4.84 5.29 -2.92 -0.02 4.83 16 34 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.11 0.42 8.11 -2.39 -0.02 0.40 16 36 H 0.12 -0.20 8.14 -2.38 -0.02 -0.22 16 37 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.44 3.90 8.96 -92.70 -0.83 3.07 16 39 H 0.16 2.09 7.29 -2.91 -0.02 2.07 16 40 H 0.14 3.32 8.03 -2.91 -0.02 3.29 16 Total: -1.00 -89.72 337.65 0.41 -89.31 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.37 Total: 31.55 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.96 Total: 12.94 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -7.09 Total: -114.70 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -0.12 Total: -63.67 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -89.72 0.41 -89.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843983860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.055 kcal (2) G-P(sol) polarization free energy of solvation -89.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds