Wall clock time and date at job start Tue Mar 31 2020 07:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47522 * 2 1 4 4 C 1.53000 * 109.47314 * 239.99780 * 2 1 3 5 5 C 1.50699 * 109.46870 * 59.99918 * 4 2 1 6 6 H 1.08002 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99764 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00372 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99900 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46901 * 60.00093 * 9 7 5 11 11 H 1.48503 * 109.47103 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46948 * 300.00323 * 9 7 5 13 13 C 1.53002 * 109.46762 * 119.99831 * 2 1 3 14 14 O 1.45200 * 109.47388 * 299.99932 * 13 2 1 15 15 C 1.34797 * 116.99884 * 180.02562 * 14 13 2 16 16 O 1.21514 * 120.00264 * 359.97438 * 15 14 13 17 17 C 1.47358 * 119.99839 * 180.02562 * 15 14 13 18 18 C 1.36944 * 120.61957 * 180.02562 * 17 15 14 19 19 C 1.40123 * 119.25296 * 179.97438 * 18 17 15 20 20 N 1.31144 * 120.46927 * 359.97438 * 19 18 17 21 21 C 1.33686 * 121.20340 * 0.02562 * 20 19 18 22 22 C 1.39074 * 132.55923 * 180.02562 * 21 20 19 23 23 C 1.38496 * 107.67184 * 179.97438 * 22 21 20 24 24 N 1.31539 * 109.03709 * 359.97438 * 23 22 21 25 25 N 1.37299 * 120.63661 * 0.02562 * 21 20 19 26 26 H 1.08997 * 109.47221 * 300.00709 * 1 2 3 27 27 H 1.09000 * 109.46800 * 59.99914 * 1 2 3 28 28 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47116 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46695 * 300.00144 * 3 2 1 31 31 H 1.09006 * 109.46855 * 59.99401 * 3 2 1 32 32 H 1.08995 * 109.47607 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.46997 * 300.00452 * 4 2 1 34 34 H 0.96992 * 120.00109 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46726 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47284 * 60.00237 * 13 2 1 37 37 H 1.08009 * 120.37625 * 359.94781 * 18 17 15 38 38 H 1.07996 * 119.76911 * 180.02562 * 19 18 17 39 39 H 1.08002 * 126.16338 * 359.93548 * 22 21 20 40 40 H 1.07994 * 125.48034 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8526 9 14 1.2492 0.3993 -5.2572 10 1 1.7442 1.7993 -5.2567 11 1 1.7451 -0.3002 -6.4697 12 1 -0.2358 0.3993 -5.2577 13 6 2.0399 -0.7212 1.2493 14 8 1.5559 -0.0367 2.4349 15 6 1.9185 -0.5487 3.6279 16 8 2.6195 -1.5401 3.6760 17 6 1.4639 0.0933 4.8740 18 6 1.8251 -0.4157 6.0929 19 6 1.3770 0.2179 7.2596 20 7 0.6207 1.2868 7.1872 21 6 0.2570 1.7994 6.0073 22 6 -0.5204 2.8986 5.6587 23 6 -0.5649 2.9604 4.2758 24 7 0.1386 1.9662 3.7790 25 7 0.6682 1.2160 4.8344 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 2.8623 -1.8819 -4.7335 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 2.4480 -1.2960 6.1543 38 1 1.6572 -0.1762 8.2252 39 1 -1.0031 3.5806 6.3430 40 1 -1.0923 3.7051 3.6983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860735461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:12 Heat of formation + Delta-G solvation = 9.117867 kcal Electronic energy + Delta-G solvation = -24516.030897 eV Core-core repulsion = 20911.503833 eV Total energy + Delta-G solvation = -3604.527064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.40343 -41.64142 -39.29592 -38.69579 -37.06600 -35.27739 -34.41578 -32.14276 -30.21620 -29.43295 -28.40105 -28.00906 -26.84056 -25.07665 -24.45261 -23.59664 -21.73588 -20.07359 -19.95992 -18.43391 -18.41822 -18.14173 -17.90803 -17.76866 -16.90521 -16.53524 -16.17370 -15.38656 -15.35958 -15.15433 -14.78790 -14.57240 -14.14387 -14.07801 -13.97942 -13.87708 -13.71782 -13.02221 -12.79481 -12.69760 -12.42061 -12.40048 -12.34686 -12.21473 -12.15256 -11.99565 -11.95437 -11.44082 -11.13130 -11.02320 -10.94164 -10.63154 -10.53225 -9.08823 -8.17097 -6.24783 -1.19088 -0.22046 0.84575 0.97958 1.15768 1.41847 1.43854 1.51283 1.69281 2.31951 2.42561 2.76687 2.89819 3.17403 3.25710 3.79992 3.82197 3.86161 3.91387 4.04888 4.16309 4.39264 4.41321 4.45634 4.53240 4.69185 4.81699 4.94555 4.97619 4.98047 5.10082 5.13865 5.28858 5.39260 5.40764 5.44782 5.48319 5.51087 5.69975 5.84933 6.21793 6.30135 6.36892 6.45440 6.88003 7.42682 8.95343 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026401 B = 0.003353 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.309418 B = 8349.345833 C = 9213.290623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.115 4.115 4 C 0.043 3.957 5 C -0.517 4.517 6 H 0.069 0.931 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.086 3.914 14 O -0.319 6.319 15 C 0.504 3.496 16 O -0.502 6.502 17 C 0.121 3.879 18 C -0.115 4.115 19 C 0.186 3.814 20 N -0.451 5.451 21 C 0.220 3.780 22 C -0.248 4.248 23 C 0.079 3.921 24 N -0.313 5.313 25 N -0.313 5.313 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.059 0.941 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.208 0.792 38 H 0.246 0.754 39 H 0.188 0.812 40 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 6.425 24.613 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.172 4.172 4 C 0.006 3.994 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.012 3.988 14 O -0.233 6.233 15 C 0.347 3.653 16 O -0.391 6.391 17 C 0.007 3.993 18 C -0.139 4.139 19 C 0.001 3.999 20 N -0.163 5.163 21 C -0.006 4.006 22 C -0.279 4.279 23 C -0.098 4.098 24 N -0.137 5.137 25 N -0.088 5.088 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.225 0.775 38 H 0.262 0.738 39 H 0.206 0.794 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.311 6.099 23.887 25.027 hybrid contribution 0.154 -0.217 -1.395 1.420 sum -4.157 5.882 22.492 23.617 Atomic orbital electron populations 1.21593 0.93725 1.00606 1.01323 1.20593 0.96931 0.96405 0.91150 1.21594 0.99449 0.94883 1.01323 1.18961 0.94578 0.94322 0.91561 1.21487 1.30799 1.12214 0.91003 0.91263 1.25907 0.95519 0.95828 1.02560 1.70093 1.38506 1.24801 1.24322 0.85590 0.78978 0.78777 0.78275 1.19217 1.21340 1.19204 1.23338 0.98697 0.95612 0.81131 1.86769 1.68124 1.54403 1.13995 1.20751 0.77877 0.81970 0.84732 1.90899 1.35437 1.24734 1.88031 1.19816 0.96937 0.88407 0.94171 1.22779 0.99987 1.02691 0.88463 1.24357 0.87642 0.87361 1.00503 1.68026 1.13138 1.12899 1.22217 1.21242 1.00421 0.97371 0.81565 1.21467 1.09368 1.01118 0.95899 1.24601 0.95023 0.95743 0.94466 1.78313 1.19277 1.08961 1.07194 1.47430 1.33586 1.19179 1.08630 0.92189 0.92577 0.94376 0.94374 0.92583 0.92182 0.98962 0.98964 0.92990 0.91665 0.91669 0.77522 0.73812 0.79437 0.75269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.08 71.98 0.58 -3.95 16 2 C -0.05 -2.12 0.61 -52.18 -0.03 -2.15 16 3 C -0.12 -4.53 8.08 71.98 0.58 -3.95 16 4 C 0.04 2.23 4.04 29.85 0.12 2.35 16 5 C -0.52 -28.39 7.65 25.60 0.20 -28.20 16 6 H 0.07 3.62 5.68 -2.91 -0.02 3.61 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.94 -56.82 13.29 21.45 0.28 -56.54 16 9 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.09 3.26 4.33 71.98 0.31 3.57 16 14 O -0.32 -11.12 7.76 -57.08 -0.44 -11.57 16 15 C 0.50 15.55 7.93 70.22 0.56 16.10 16 16 O -0.50 -16.43 16.15 19.79 0.32 -16.11 16 17 C 0.12 3.00 6.82 40.33 0.27 3.27 16 18 C -0.11 -1.66 9.61 22.42 0.22 -1.45 16 19 C 0.19 1.94 11.26 85.25 0.96 2.90 16 20 N -0.45 -8.12 10.44 -192.63 -2.01 -10.13 16 21 C 0.22 5.03 7.93 133.23 1.06 6.08 16 22 C -0.25 -4.82 10.91 22.53 0.25 -4.57 16 23 C 0.08 1.63 11.94 84.80 1.01 2.64 16 24 N -0.31 -8.94 11.55 -57.55 -0.66 -9.60 16 25 N -0.31 -8.35 3.95 -182.04 -0.72 -9.07 16 26 H 0.06 2.17 7.68 -2.39 -0.02 2.15 16 27 H 0.06 2.29 6.62 -2.39 -0.02 2.27 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 2.29 6.62 -2.39 -0.02 2.27 16 31 H 0.06 2.17 7.68 -2.38 -0.02 2.15 16 32 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.21 1.83 7.65 -2.91 -0.02 1.81 16 38 H 0.25 -0.31 8.06 -2.91 -0.02 -0.33 16 39 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.23 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -74.36 341.87 6.39 -67.96 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.06 Total: 5.91 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 6.54 Total: -6.94 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.11 Total: -85.33 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.12 Total: -27.67 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -74.36 6.39 -67.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.081 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds