Wall clock time and date at job start Tue Mar 31 2020 07:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47719 * 333.44764 * 3 2 1 5 5 C 1.37097 * 120.00143 * 264.39337 * 4 3 2 6 6 H 1.08002 * 120.00298 * 196.17531 * 5 4 3 7 7 C 1.38955 * 119.99871 * 16.17224 * 5 4 3 8 8 N 1.31417 * 119.99991 * 20.85519 * 7 5 4 9 9 Si 1.86801 * 119.99999 * 200.85772 * 7 5 4 10 10 H 1.48500 * 109.47223 * 84.94128 * 9 7 5 11 11 H 1.48502 * 109.46969 * 204.93910 * 9 7 5 12 12 H 1.48502 * 109.47018 * 324.93748 * 9 7 5 13 13 C 1.34776 * 120.00396 * 84.38905 * 4 3 2 14 14 O 1.21293 * 120.00532 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99703 * 0.02562 * 13 4 3 16 16 C 1.52996 * 109.47056 * 179.97438 * 15 13 4 17 17 C 1.53000 * 109.47177 * 60.00275 * 16 15 13 18 18 C 1.53003 * 109.47339 * 300.00106 * 16 15 13 19 19 C 1.50704 * 109.47056 * 180.02562 * 16 15 13 20 20 C 1.38245 * 119.97282 * 359.72935 * 19 16 15 21 21 C 1.38200 * 120.02152 * 179.72405 * 20 19 16 22 22 C 1.38457 * 119.97438 * 0.56846 * 21 20 19 23 23 F 1.35107 * 120.02352 * 179.68287 * 22 21 20 24 24 C 1.38451 * 119.95160 * 359.70385 * 22 21 20 25 25 C 1.38205 * 119.97278 * 0.02562 * 24 22 21 26 26 H 4.40642 * 5.51304 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.46716 * 213.44390 * 3 2 1 28 28 H 1.09006 * 109.47345 * 93.44979 * 3 2 1 29 29 H 0.96994 * 119.99868 * 180.02562 * 8 7 5 30 30 H 1.09009 * 109.46961 * 60.00039 * 15 13 4 31 31 H 1.08993 * 109.47477 * 300.00232 * 15 13 4 32 32 H 1.09003 * 109.46843 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.46864 * 299.99507 * 17 16 15 34 34 H 1.08993 * 109.46931 * 60.00002 * 17 16 15 35 35 H 1.09001 * 109.46848 * 299.99900 * 18 16 15 36 36 H 1.08994 * 109.47022 * 59.99703 * 18 16 15 37 37 H 1.08995 * 109.47280 * 180.02562 * 18 16 15 38 38 H 1.07998 * 119.99146 * 359.97438 * 20 19 16 39 39 H 1.07999 * 120.01066 * 180.25541 * 21 20 19 40 40 H 1.08000 * 120.01941 * 179.97438 * 24 22 21 41 41 H 1.08003 * 119.98632 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2346 0.6174 5 6 3.4730 -1.2497 1.9460 6 1 4.0689 -2.0585 2.3424 7 6 3.0488 -0.2245 2.7825 8 7 2.0204 0.5191 2.4411 9 14 3.9403 0.0968 4.3922 10 1 5.1112 0.9754 4.1428 11 1 3.0163 0.7623 5.3455 12 1 4.4020 -1.1918 4.9682 13 6 3.2527 -2.3561 -0.1206 14 8 3.6571 -3.3790 0.3906 15 6 2.8817 -2.3394 -1.5812 16 6 3.1071 -3.7289 -2.1806 17 6 2.2361 -4.7491 -1.4449 18 6 4.5802 -4.1152 -2.0330 19 6 2.7367 -3.7120 -3.6413 20 6 2.2704 -2.5473 -4.2221 21 6 1.9358 -2.5292 -5.5629 22 6 2.0566 -3.6811 -6.3217 23 9 1.7237 -3.6661 -7.6310 24 6 2.5184 -4.8483 -5.7375 25 6 2.8577 -4.8627 -4.3979 26 1 -1.0497 -0.0004 0.0000 27 1 3.0089 0.8584 0.5664 28 1 3.0094 0.0627 -1.0258 29 1 1.7245 1.2350 3.0249 30 1 3.5025 -1.6128 -2.1055 31 1 1.8324 -2.0638 -1.6864 32 1 2.3971 -5.7391 -1.8716 33 1 2.5044 -4.7613 -0.3885 34 1 1.1867 -4.4740 -1.5501 35 1 5.2006 -3.3884 -2.5572 36 1 4.8485 -4.1273 -0.9766 37 1 4.7408 -5.1049 -2.4604 38 1 2.1714 -1.6503 -3.6289 39 1 1.5755 -1.6182 -6.0174 40 1 2.6126 -5.7475 -6.3282 41 1 3.2183 -5.7730 -3.9421 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868041210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:06 Heat of formation + Delta-G solvation = -3.308905 kcal Electronic energy + Delta-G solvation = -24744.598032 eV Core-core repulsion = 21119.612141 eV Total energy + Delta-G solvation = -3624.985891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.83383 -41.32938 -39.94240 -37.49719 -36.11115 -33.97825 -32.98075 -32.21912 -30.39411 -29.40312 -28.07296 -28.03533 -26.19293 -24.01232 -23.64409 -21.32711 -19.90182 -19.51428 -18.81937 -18.30824 -17.89411 -17.11719 -16.62624 -16.53778 -16.18376 -16.00353 -15.83759 -15.29013 -14.98548 -14.77861 -14.44396 -14.40929 -14.10403 -14.00820 -13.81881 -13.54608 -13.19314 -13.13853 -12.78381 -12.59925 -12.52368 -12.26297 -12.20749 -12.09336 -11.83185 -11.77877 -11.38987 -11.07749 -11.01913 -10.56070 -9.99881 -9.95500 -9.73151 -9.44313 -8.26697 -5.85126 0.21964 0.33799 1.39244 1.44714 1.54212 1.96901 2.19952 2.36324 2.41800 2.67171 3.10767 3.20981 3.34654 3.67417 3.80330 3.93232 4.02546 4.05188 4.11793 4.23230 4.40116 4.42662 4.53445 4.64935 4.75947 4.84571 4.91850 5.01164 5.05050 5.05565 5.10694 5.17583 5.18461 5.24391 5.33434 5.46373 5.51697 5.60465 5.64290 5.73522 5.99177 6.14125 6.52579 7.17325 7.23923 7.52795 8.10774 8.71593 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003797 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.280770 B = 7372.539872 C = 8117.177267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.149 4.149 3 C 0.233 3.767 4 N -0.457 5.457 5 C -0.346 4.346 6 H 0.077 0.923 7 C 0.002 3.998 8 N -0.876 5.876 9 Si 0.979 3.021 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.448 3.552 14 O -0.602 6.602 15 C -0.115 4.115 16 C 0.003 3.997 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.076 4.076 20 C -0.101 4.101 21 C -0.150 4.150 22 C 0.071 3.929 23 F -0.150 7.150 24 C -0.149 4.149 25 C -0.088 4.088 26 H 0.230 0.770 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.269 0.731 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -3.576 -14.872 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.150 4.150 3 C 0.110 3.890 4 N -0.176 5.176 5 C -0.473 4.473 6 H 0.095 0.905 7 C -0.201 4.201 8 N -0.513 5.513 9 Si 0.804 3.196 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.238 3.762 14 O -0.489 6.489 15 C -0.155 4.155 16 C 0.003 3.997 17 C -0.200 4.200 18 C -0.199 4.199 19 C -0.077 4.077 20 C -0.119 4.119 21 C -0.169 4.169 22 C 0.052 3.948 23 F -0.128 7.128 24 C -0.168 4.168 25 C -0.106 4.106 26 H 0.246 0.754 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.242 -3.891 -14.574 15.086 hybrid contribution -0.150 0.418 0.999 1.094 sum -0.392 -3.473 -13.574 14.017 Atomic orbital electron populations 1.25104 0.96352 1.00953 1.04579 1.23496 0.95002 0.99642 0.96890 1.18321 0.84438 0.89051 0.97170 1.43924 1.56492 1.08274 1.08906 1.19565 1.32311 1.10185 0.85282 0.90471 1.25870 0.95531 0.96780 1.01909 1.70174 1.21239 1.20641 1.39295 0.85169 0.78365 0.78215 0.77897 1.19232 1.20653 1.20370 1.20824 0.82714 0.82660 0.89973 1.90375 1.51777 1.31890 1.74819 1.21717 1.02780 0.99088 0.91896 1.19061 0.96789 0.94009 0.89862 1.22010 0.98006 0.98198 1.01737 1.22016 0.93615 1.01123 1.03165 1.19985 0.98606 0.94194 0.94878 1.21237 0.97703 0.98792 0.94151 1.21312 1.02886 0.98182 0.94479 1.17921 1.02636 0.96041 0.78232 1.91467 1.90514 1.97300 1.33564 1.21306 1.01594 0.97819 0.96034 1.21009 0.98362 0.98533 0.92666 0.75378 0.88999 0.88612 0.92082 0.88238 0.89570 0.91434 0.92133 0.93912 0.92974 0.91876 0.91587 0.83991 0.83300 0.82952 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.68 19.25 74.32 1.43 -8.25 16 2 C -0.15 -6.29 10.95 31.12 0.34 -5.95 16 3 C 0.23 9.80 4.91 84.57 0.42 10.22 16 4 N -0.46 -22.21 2.60 -645.41 -1.68 -23.89 16 5 C -0.35 -18.82 9.35 84.04 0.79 -18.03 16 6 H 0.08 4.52 7.36 -2.91 -0.02 4.49 16 7 C 0.00 0.10 4.90 84.93 0.42 0.51 16 8 N -0.88 -44.87 9.39 21.67 0.20 -44.67 16 9 Si 0.98 41.54 29.60 68.60 2.03 43.58 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.45 20.15 6.98 87.66 0.61 20.76 16 14 O -0.60 -30.45 10.98 -3.07 -0.03 -30.49 16 15 C -0.12 -3.82 2.03 29.85 0.06 -3.76 16 16 C 0.00 0.10 0.60 -52.93 -0.03 0.06 16 17 C -0.14 -4.55 7.99 71.98 0.58 -3.98 16 18 C -0.14 -4.27 7.99 71.98 0.58 -3.69 16 19 C -0.08 -1.87 4.76 -19.86 -0.09 -1.97 16 20 C -0.10 -2.31 8.97 22.26 0.20 -2.11 16 21 C -0.15 -3.17 10.03 22.31 0.22 -2.94 16 22 C 0.07 1.55 7.30 22.37 0.16 1.71 16 23 F -0.15 -3.42 17.27 44.97 0.78 -2.64 16 24 C -0.15 -2.95 10.03 22.31 0.22 -2.73 16 25 C -0.09 -1.86 8.71 22.26 0.19 -1.67 16 26 H 0.23 6.89 7.80 -4.43 -0.03 6.86 16 27 H 0.09 4.19 6.34 -2.38 -0.02 4.18 16 28 H 0.10 3.21 6.67 -2.38 -0.02 3.19 16 29 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 30 H 0.10 2.86 6.80 -2.38 -0.02 2.84 16 31 H 0.09 2.82 6.88 -2.39 -0.02 2.81 16 32 H 0.07 1.79 7.39 -2.39 -0.02 1.77 16 33 H 0.06 2.42 5.51 -2.39 -0.01 2.41 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 2.38 5.51 -2.39 -0.01 2.37 16 37 H 0.07 1.66 7.39 -2.39 -0.02 1.64 16 38 H 0.14 3.05 5.89 -2.91 -0.02 3.03 16 39 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.15 2.62 7.10 -2.91 -0.02 2.60 16 Total: -1.00 -62.62 337.26 8.43 -54.19 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 1.05 Total: 25.72 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 6.09 Total: -21.80 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.48 Total: -68.55 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.03 Total: -30.49 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.58 kcal Total: -62.62 8.43 -54.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868041210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.881 kcal (2) G-P(sol) polarization free energy of solvation -62.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds