Wall clock time and date at job start Tue Mar 31 2020 07:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47252 * 70.14834 * 3 2 1 5 5 C 1.52997 * 109.47183 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47286 * 304.99709 * 5 4 3 7 7 O 1.42899 * 109.47299 * 65.00000 * 5 4 3 8 8 C 1.53009 * 109.47262 * 184.99812 * 5 4 3 9 9 N 1.46498 * 109.47241 * 180.02562 * 8 5 4 10 10 C 1.34770 * 119.99900 * 180.02562 * 9 8 5 11 11 O 1.21578 * 119.99954 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.39460 * 119.99575 * 174.94365 * 12 10 9 14 14 C 1.38644 * 119.64426 * 174.65008 * 13 12 10 15 15 C 1.40830 * 118.67488 * 180.27802 * 14 13 12 16 16 C 1.41544 * 120.99712 * 179.70280 * 15 14 13 17 17 H 1.07998 * 119.99784 * 26.10363 * 16 15 14 18 18 C 1.40027 * 119.99666 * 206.10010 * 16 15 14 19 19 N 1.30743 * 120.00182 * 9.78756 * 18 16 15 20 20 Si 1.86803 * 119.99768 * 189.78672 * 18 16 15 21 21 H 1.48500 * 109.46997 * 90.00351 * 20 18 16 22 22 H 1.48497 * 109.46985 * 209.99877 * 20 18 16 23 23 H 1.48497 * 109.47301 * 330.00100 * 20 18 16 24 24 C 1.41169 * 117.99935 * 359.45981 * 15 14 13 25 25 C 1.36585 * 119.12963 * 0.51845 * 24 15 14 26 26 N 1.32073 * 121.25893 * 359.74649 * 25 24 15 27 27 H 4.44646 * 5.63297 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47228 * 310.14614 * 3 2 1 29 29 H 1.09005 * 109.47268 * 190.14687 * 3 2 1 30 30 H 1.08996 * 109.47184 * 59.99753 * 4 3 2 31 31 H 1.09002 * 109.47136 * 299.99659 * 4 3 2 32 32 H 0.96701 * 113.99835 * 60.00039 * 7 5 4 33 33 H 1.09003 * 109.46358 * 59.99900 * 8 5 4 34 34 H 1.08996 * 109.47136 * 300.00464 * 8 5 4 35 35 H 0.97001 * 120.00075 * 359.97438 * 9 8 5 36 36 H 0.96992 * 120.00322 * 354.93771 * 12 10 9 37 37 H 1.07999 * 120.66543 * 359.97438 * 14 13 12 38 38 H 0.96998 * 120.00341 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.43084 * 180.29189 * 24 15 14 40 40 H 1.07995 * 119.36989 * 179.76455 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4890 -1.3568 5 6 4.6862 -0.4877 -1.3570 6 1 5.0487 0.5047 -1.0887 7 8 5.1635 -1.4422 -0.4067 8 6 5.1964 -0.8572 -2.7514 9 7 6.6613 -0.8566 -2.7514 10 6 7.3353 -1.1550 -3.8797 11 8 6.7275 -1.4252 -4.8974 12 7 8.6831 -1.1549 -3.8796 13 6 9.3804 -1.5654 -5.0154 14 6 10.7623 -1.4577 -5.0479 15 6 11.4454 -1.8727 -6.2075 16 6 12.8549 -1.7787 -6.2961 17 1 13.4550 -1.7996 -5.3984 18 6 13.4712 -1.6587 -7.5478 19 7 12.7474 -1.4414 -8.6147 20 14 15.3274 -1.8092 -7.6931 21 1 15.6921 -3.2296 -7.9266 22 1 15.8035 -0.9824 -8.8311 23 1 15.9623 -1.3351 -6.4371 24 6 10.6824 -2.3902 -7.2766 25 6 9.3240 -2.4583 -7.1521 26 7 8.7155 -2.0546 -6.0516 27 1 -1.0499 0.0001 -0.0002 28 1 3.0096 -0.6617 0.7855 29 1 3.0089 1.0124 0.1811 30 1 2.7926 0.1734 -2.1423 31 1 2.7934 -1.5008 -1.5378 32 1 4.8789 -2.3493 -0.5836 33 1 4.8322 -0.1291 -3.4761 34 1 4.8338 -1.8495 -3.0197 35 1 7.1463 -0.6407 -1.9395 36 1 9.1680 -0.8693 -3.0896 37 1 11.3037 -1.0587 -4.2029 38 1 13.1742 -1.3586 -9.4817 39 1 11.1664 -2.7244 -8.1824 40 1 8.7362 -2.8500 -7.9691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871729893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:34 Heat of formation + Delta-G solvation = 3.312710 kcal Electronic energy + Delta-G solvation = -22912.438689 eV Core-core repulsion = 19307.659894 eV Total energy + Delta-G solvation = -3604.778795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91354 -38.65436 -37.76859 -35.02713 -34.56052 -33.93854 -33.51132 -31.76130 -30.62469 -29.15079 -27.83853 -25.97457 -24.35998 -22.02388 -21.83848 -21.61225 -20.03856 -18.48243 -17.96812 -17.89016 -16.82811 -16.55517 -15.88714 -15.29093 -15.12587 -14.89860 -14.59505 -14.30451 -14.21443 -14.02379 -13.47229 -13.25105 -13.08174 -12.92235 -12.85090 -12.34914 -12.11116 -11.85109 -11.39815 -11.25721 -11.24669 -10.95789 -10.80510 -10.43813 -10.35661 -10.25389 -10.00152 -9.72792 -9.54369 -9.38804 -8.85411 -7.98285 -7.70529 -6.99801 -6.73047 -4.61031 2.45284 2.51534 2.74137 2.79994 2.95439 3.03447 3.06550 3.25451 3.85233 3.87636 3.92937 4.07964 4.40950 4.49424 4.62515 4.73070 4.75668 5.00532 5.08034 5.24159 5.48731 5.59614 5.69034 5.70456 5.72833 5.83216 5.98551 6.53817 6.59492 6.66416 6.79787 6.94397 7.15892 7.25451 7.28136 7.29840 7.46152 7.57493 7.92097 8.11771 8.35291 8.51378 8.76278 8.77349 9.14872 9.75875 10.12156 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.049694 B = 0.002107 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.315838 B =13286.470195 C =13669.181439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.186 4.186 3 C -0.009 4.009 4 C -0.144 4.144 5 C 0.097 3.903 6 H 0.108 0.892 7 O -0.558 6.558 8 C 0.110 3.890 9 N -0.750 5.750 10 C 0.691 3.309 11 O -0.533 6.533 12 N -0.670 5.670 13 C 0.366 3.634 14 C -0.305 4.305 15 C 0.146 3.854 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.791 5.791 20 Si 0.916 3.084 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.223 4.223 25 C 0.103 3.897 26 N -0.553 5.553 27 H 0.216 0.784 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.379 0.621 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.403 0.597 37 H 0.101 0.899 38 H 0.282 0.718 39 H 0.131 0.869 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 2.444 14.344 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.186 4.186 3 C -0.046 4.046 4 C -0.183 4.183 5 C 0.037 3.963 6 H 0.126 0.874 7 O -0.364 6.364 8 C -0.015 4.015 9 N -0.409 5.409 10 C 0.390 3.610 11 O -0.404 6.404 12 N -0.318 5.318 13 C 0.137 3.863 14 C -0.331 4.331 15 C 0.137 3.863 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.417 5.417 20 Si 0.740 3.260 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.246 4.246 25 C -0.047 4.047 26 N -0.272 5.272 27 H 0.233 0.767 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.227 0.773 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.875 2.685 13.421 20.214 hybrid contribution 1.691 -0.083 0.266 1.714 sum -13.184 2.602 13.687 19.181 Atomic orbital electron populations 1.24931 0.96032 1.01304 1.00802 1.23204 0.94655 1.00295 1.00483 1.18668 0.84400 1.03012 0.98495 1.22178 0.95300 1.03285 0.97489 1.22207 0.92378 0.93934 0.87752 0.87423 1.86570 1.77092 1.20556 1.52186 1.21780 0.80167 1.02630 0.96935 1.45029 1.06304 1.77284 1.12245 1.16083 0.81973 0.79187 0.83737 1.91020 1.66763 1.51725 1.30910 1.42561 1.04700 1.68586 1.15941 1.17760 0.87311 0.94896 0.86365 1.21184 0.91241 1.17746 1.02960 1.17607 0.93493 0.85641 0.89521 1.19565 0.91391 1.44394 0.93299 0.90159 1.25965 1.01145 0.92023 0.95236 1.69755 1.37972 1.33881 1.00096 0.86184 0.81645 0.79202 0.78925 1.19213 1.20193 1.18580 1.22073 0.93713 1.06475 1.02348 1.21629 0.92444 0.96974 0.93663 1.67181 1.39390 1.19817 1.00816 0.76731 0.88802 0.89465 0.90061 0.90670 0.77347 0.90876 0.91453 0.77086 0.76327 0.88074 0.90678 0.85114 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -1.55 13.34 -37.12 -0.50 -2.05 16 3 C -0.01 -0.06 5.60 -29.52 -0.17 -0.22 16 4 C -0.14 -0.90 4.85 -26.73 -0.13 -1.03 16 5 C 0.10 0.68 3.05 -26.73 -0.08 0.60 16 6 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 7 O -0.56 -4.13 12.62 -35.23 -0.44 -4.57 16 8 C 0.11 1.15 5.34 -4.04 -0.02 1.13 16 9 N -0.75 -9.58 5.45 -65.22 -0.36 -9.94 16 10 C 0.69 12.95 8.51 -86.92 -0.74 12.21 16 11 O -0.53 -12.57 14.64 5.30 0.08 -12.50 16 12 N -0.67 -12.65 5.40 -15.86 -0.09 -12.74 16 13 C 0.37 8.75 7.41 -154.68 -1.15 7.61 16 14 C -0.30 -7.40 9.74 -38.45 -0.37 -7.78 16 15 C 0.15 3.87 5.60 -106.54 -0.60 3.27 16 16 C -0.46 -11.75 9.13 -37.65 -0.34 -12.09 16 17 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 18 C 0.07 1.83 5.31 -17.34 -0.09 1.74 16 19 N -0.79 -20.05 10.70 55.55 0.59 -19.45 16 20 Si 0.92 18.13 29.57 -169.99 -5.03 13.11 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 24 C -0.22 -5.87 8.73 -39.07 -0.34 -6.21 16 25 C 0.10 2.64 11.10 -18.04 -0.20 2.44 16 26 N -0.55 -14.47 7.89 -12.76 -0.10 -14.57 16 27 H 0.22 0.95 7.80 -54.10 -0.42 0.53 16 28 H 0.09 0.58 7.82 -51.93 -0.41 0.18 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.38 1.95 9.05 45.56 0.41 2.36 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 4.03 8.37 -40.82 -0.34 3.69 16 36 H 0.40 5.88 8.71 -40.82 -0.36 5.53 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 38 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 39 H 0.13 3.48 6.11 -52.48 -0.32 3.16 16 40 H 0.12 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -34.23 353.55 -8.54 -42.77 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.36 Total: 14.01 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -4.16 Total: -1.45 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.05 Total: -56.70 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.37 Total: -17.07 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.23 -8.54 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.081 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds