Wall clock time and date at job start Tue Mar 31 2020 07:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47252 * 70.14834 * 3 2 1 5 5 C 1.52997 * 109.47183 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47286 * 304.99709 * 5 4 3 7 7 O 1.42899 * 109.47299 * 65.00000 * 5 4 3 8 8 C 1.53009 * 109.47262 * 184.99812 * 5 4 3 9 9 N 1.46498 * 109.47241 * 180.02562 * 8 5 4 10 10 C 1.34770 * 119.99900 * 180.02562 * 9 8 5 11 11 O 1.21578 * 119.99954 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.39460 * 119.99575 * 174.94365 * 12 10 9 14 14 C 1.38644 * 119.64426 * 174.65008 * 13 12 10 15 15 C 1.40830 * 118.67488 * 180.27802 * 14 13 12 16 16 C 1.41544 * 120.99712 * 179.70280 * 15 14 13 17 17 H 1.07998 * 119.99784 * 26.10363 * 16 15 14 18 18 C 1.40027 * 119.99666 * 206.10010 * 16 15 14 19 19 N 1.30743 * 120.00182 * 9.78756 * 18 16 15 20 20 Si 1.86803 * 119.99768 * 189.78672 * 18 16 15 21 21 H 1.48500 * 109.46997 * 90.00351 * 20 18 16 22 22 H 1.48497 * 109.46985 * 209.99877 * 20 18 16 23 23 H 1.48497 * 109.47301 * 330.00100 * 20 18 16 24 24 C 1.41169 * 117.99935 * 359.45981 * 15 14 13 25 25 C 1.36585 * 119.12963 * 0.51845 * 24 15 14 26 26 N 1.32073 * 121.25893 * 359.74649 * 25 24 15 27 27 H 4.44646 * 5.63297 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47228 * 310.14614 * 3 2 1 29 29 H 1.09005 * 109.47268 * 190.14687 * 3 2 1 30 30 H 1.08996 * 109.47184 * 59.99753 * 4 3 2 31 31 H 1.09002 * 109.47136 * 299.99659 * 4 3 2 32 32 H 0.96701 * 113.99835 * 60.00039 * 7 5 4 33 33 H 1.09003 * 109.46358 * 59.99900 * 8 5 4 34 34 H 1.08996 * 109.47136 * 300.00464 * 8 5 4 35 35 H 0.97001 * 120.00075 * 359.97438 * 9 8 5 36 36 H 0.96992 * 120.00322 * 354.93771 * 12 10 9 37 37 H 1.07999 * 120.66543 * 359.97438 * 14 13 12 38 38 H 0.96998 * 120.00341 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.43084 * 180.29189 * 24 15 14 40 40 H 1.07995 * 119.36989 * 179.76455 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4890 -1.3568 5 6 4.6862 -0.4877 -1.3570 6 1 5.0487 0.5047 -1.0887 7 8 5.1635 -1.4422 -0.4067 8 6 5.1964 -0.8572 -2.7514 9 7 6.6613 -0.8566 -2.7514 10 6 7.3353 -1.1550 -3.8797 11 8 6.7275 -1.4252 -4.8974 12 7 8.6831 -1.1549 -3.8796 13 6 9.3804 -1.5654 -5.0154 14 6 10.7623 -1.4577 -5.0479 15 6 11.4454 -1.8727 -6.2075 16 6 12.8549 -1.7787 -6.2961 17 1 13.4550 -1.7996 -5.3984 18 6 13.4712 -1.6587 -7.5478 19 7 12.7474 -1.4414 -8.6147 20 14 15.3274 -1.8092 -7.6931 21 1 15.6921 -3.2296 -7.9266 22 1 15.8035 -0.9824 -8.8311 23 1 15.9623 -1.3351 -6.4371 24 6 10.6824 -2.3902 -7.2766 25 6 9.3240 -2.4583 -7.1521 26 7 8.7155 -2.0546 -6.0516 27 1 -1.0499 0.0001 -0.0002 28 1 3.0096 -0.6617 0.7855 29 1 3.0089 1.0124 0.1811 30 1 2.7926 0.1734 -2.1423 31 1 2.7934 -1.5008 -1.5378 32 1 4.8789 -2.3493 -0.5836 33 1 4.8322 -0.1291 -3.4761 34 1 4.8338 -1.8495 -3.0197 35 1 7.1463 -0.6407 -1.9395 36 1 9.1680 -0.8693 -3.0896 37 1 11.3037 -1.0587 -4.2029 38 1 13.1742 -1.3586 -9.4817 39 1 11.1664 -2.7244 -8.1824 40 1 8.7362 -2.8500 -7.9691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871729893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:34 Heat of formation + Delta-G solvation = -21.210032 kcal Electronic energy + Delta-G solvation = -22913.502074 eV Core-core repulsion = 19307.659894 eV Total energy + Delta-G solvation = -3605.842181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42382 -39.96690 -38.97692 -36.29907 -35.61081 -35.32450 -35.07495 -32.56314 -32.39854 -30.59622 -29.00210 -27.89660 -25.23726 -23.67516 -23.35677 -22.59770 -21.58532 -19.69845 -19.45995 -18.87901 -17.93736 -17.40757 -17.23888 -16.80666 -16.34970 -16.17497 -15.98380 -15.79786 -15.50494 -15.07266 -14.78626 -14.72107 -14.35093 -14.17300 -13.81216 -13.70216 -13.40215 -13.11640 -12.87378 -12.83145 -12.38504 -12.06598 -11.87583 -11.82157 -11.47552 -11.38936 -11.27876 -11.19076 -10.97656 -10.83228 -10.07848 -9.94293 -9.62286 -8.83609 -8.57890 -6.57670 0.84647 1.00356 1.42075 1.55520 1.58954 1.60541 1.90775 1.93810 2.21065 2.30489 2.86137 3.13094 3.48645 3.54244 3.75087 3.77633 4.02664 4.14206 4.18574 4.36250 4.50717 4.67443 4.73689 4.77749 4.86011 4.89076 4.95155 5.05777 5.19854 5.22423 5.25473 5.26995 5.49035 5.52222 5.65685 5.91320 5.98299 6.27528 6.56418 6.72753 6.79088 6.80849 6.84264 7.03310 7.63462 7.91503 8.30024 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.049694 B = 0.002107 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.315838 B =13286.470195 C =13669.181439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.216 4.216 3 C -0.007 4.007 4 C -0.137 4.137 5 C 0.116 3.884 6 H 0.120 0.880 7 O -0.565 6.565 8 C 0.107 3.893 9 N -0.724 5.724 10 C 0.687 3.313 11 O -0.585 6.585 12 N -0.659 5.659 13 C 0.364 3.636 14 C -0.313 4.313 15 C 0.117 3.883 16 C -0.481 4.481 17 H 0.088 0.912 18 C 0.033 3.967 19 N -0.821 5.821 20 Si 0.994 3.006 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.254 1.254 24 C -0.242 4.242 25 C 0.097 3.903 26 N -0.578 5.578 27 H 0.239 0.761 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.389 0.611 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.412 0.588 36 H 0.423 0.577 37 H 0.124 0.876 38 H 0.291 0.709 39 H 0.121 0.879 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 3.010 16.071 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.175 4.175 5 C 0.056 3.944 6 H 0.138 0.862 7 O -0.372 6.372 8 C -0.018 4.018 9 N -0.382 5.382 10 C 0.387 3.613 11 O -0.460 6.460 12 N -0.309 5.309 13 C 0.134 3.866 14 C -0.339 4.339 15 C 0.109 3.891 16 C -0.512 4.512 17 H 0.106 0.894 18 C -0.183 4.183 19 N -0.447 5.447 20 Si 0.814 3.186 21 H -0.186 1.186 22 H -0.194 1.194 23 H -0.178 1.178 24 C -0.265 4.265 25 C -0.054 4.054 26 N -0.298 5.298 27 H 0.255 0.745 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.249 0.751 36 H 0.261 0.739 37 H 0.142 0.858 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.397 3.271 15.244 21.221 hybrid contribution 1.423 -0.242 -0.224 1.460 sum -12.974 3.029 15.020 20.077 Atomic orbital electron populations 1.25696 0.97054 1.00727 1.00133 1.23778 0.95665 1.00938 1.01171 1.18697 0.83611 1.03649 0.98396 1.22088 0.94514 1.03357 0.97555 1.22046 0.92639 0.94307 0.85395 0.86219 1.86557 1.77267 1.21405 1.52000 1.22005 0.78395 1.02168 0.99238 1.44823 1.07219 1.75211 1.10978 1.16302 0.81707 0.78847 0.84461 1.90989 1.67654 1.54067 1.33257 1.42390 1.05074 1.68100 1.15330 1.18016 0.87764 0.93789 0.87001 1.21372 0.91595 1.17759 1.03142 1.18034 0.94451 0.86200 0.90461 1.19897 0.91466 1.45302 0.94488 0.89386 1.26920 1.06237 0.90838 0.94321 1.69820 1.40305 1.33666 1.00887 0.85023 0.75001 0.79362 0.79236 1.18612 1.19396 1.17775 1.22028 0.94127 1.07980 1.02409 1.21889 0.92455 0.96780 0.94251 1.67287 1.40006 1.20964 1.01582 0.74479 0.88451 0.88544 0.90188 0.90632 0.76158 0.91623 0.92213 0.75093 0.73893 0.85787 0.89823 0.86173 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.06 19.25 74.32 1.43 -1.63 16 2 C -0.22 -3.33 13.34 31.13 0.42 -2.91 16 3 C -0.01 -0.08 5.60 28.79 0.16 0.08 16 4 C -0.14 -1.49 4.85 30.59 0.15 -1.34 16 5 C 0.12 1.37 3.05 30.60 0.09 1.46 16 6 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 7 O -0.56 -6.96 12.62 -148.98 -1.88 -8.84 16 8 C 0.11 2.09 5.34 86.38 0.46 2.55 16 9 N -0.72 -17.30 5.45 -478.54 -2.61 -19.91 16 10 C 0.69 25.30 8.51 179.05 1.52 26.82 16 11 O -0.58 -27.81 14.64 -3.96 -0.06 -27.87 16 12 N -0.66 -24.27 5.40 -322.37 -1.74 -26.01 16 13 C 0.36 17.46 7.41 132.76 0.98 18.45 16 14 C -0.31 -15.17 9.74 23.00 0.22 -14.95 16 15 C 0.12 6.31 5.60 -21.11 -0.12 6.19 16 16 C -0.48 -24.89 9.13 23.52 0.21 -24.67 16 17 H 0.09 4.27 7.87 -2.91 -0.02 4.24 16 18 C 0.03 1.60 5.31 85.29 0.45 2.05 16 19 N -0.82 -41.95 10.70 21.84 0.23 -41.72 16 20 Si 0.99 36.39 29.57 68.60 2.03 38.42 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 22 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 23 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 24 C -0.24 -13.12 8.73 22.60 0.20 -12.92 16 25 C 0.10 5.07 11.10 84.27 0.94 6.00 16 26 N -0.58 -30.78 7.89 -194.28 -1.53 -32.31 16 27 H 0.24 1.70 7.80 -4.42 -0.03 1.67 16 28 H 0.10 1.02 7.82 -2.39 -0.02 1.01 16 29 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.39 3.15 9.05 -74.06 -0.67 2.48 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.41 7.31 8.37 -92.71 -0.78 6.54 16 36 H 0.42 11.56 8.71 -92.71 -0.81 10.75 16 37 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 38 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 39 H 0.12 6.65 6.11 -2.91 -0.02 6.63 16 40 H 0.14 6.45 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -74.97 353.55 0.41 -74.56 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -1.16 Total: 38.48 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 7.12 Total: 5.19 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -5.65 Total: -119.95 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.94 Total: -36.70 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -74.97 0.41 -74.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.355 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds