Wall clock time and date at job start Tue Mar 31 2020 07:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47614 * 33.68635 * 3 2 1 5 5 C 1.52992 * 109.47397 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47457 * 55.00170 * 5 4 3 7 7 O 1.42902 * 109.47164 * 294.99876 * 5 4 3 8 8 C 1.52997 * 109.47319 * 174.99749 * 5 4 3 9 9 N 1.46498 * 109.47315 * 184.99670 * 8 5 4 10 10 C 1.34783 * 120.00017 * 179.97438 * 9 8 5 11 11 O 1.21572 * 119.99975 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99968 * 180.02562 * 10 9 8 13 13 C 1.39460 * 120.00108 * 174.98204 * 12 10 9 14 14 C 1.38641 * 119.65088 * 185.36088 * 13 12 10 15 15 C 1.40815 * 118.67773 * 179.97438 * 14 13 12 16 16 C 1.41543 * 121.00089 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00280 * 151.72900 * 16 15 14 18 18 C 1.40036 * 119.99931 * 331.72946 * 16 15 14 19 19 N 1.30736 * 119.99931 * 350.15831 * 18 16 15 20 20 Si 1.86805 * 120.00016 * 170.15227 * 18 16 15 21 21 H 1.48492 * 109.47068 * 59.99984 * 20 18 16 22 22 H 1.48494 * 109.46915 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46975 * 300.00206 * 20 18 16 24 24 C 1.41163 * 118.00456 * 0.02562 * 15 14 13 25 25 C 1.36593 * 119.12506 * 0.02562 * 24 15 14 26 26 N 1.32062 * 121.25943 * 359.71821 * 25 24 15 27 27 H 4.44655 * 5.63327 * 180.02562 * 4 1 2 28 28 H 1.09007 * 109.47112 * 273.67956 * 3 2 1 29 29 H 1.09000 * 109.46891 * 153.69095 * 3 2 1 30 30 H 1.08997 * 109.47381 * 59.99508 * 4 3 2 31 31 H 1.09002 * 109.46641 * 300.00052 * 4 3 2 32 32 H 0.96704 * 113.99809 * 300.00210 * 7 5 4 33 33 H 1.09002 * 109.47008 * 304.99995 * 8 5 4 34 34 H 1.09000 * 109.46930 * 64.99839 * 8 5 4 35 35 H 0.97000 * 120.00435 * 0.02562 * 9 8 5 36 36 H 0.97006 * 120.00071 * 354.98247 * 12 10 9 37 37 H 1.08002 * 120.66195 * 0.02562 * 14 13 12 38 38 H 0.97002 * 120.00091 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.43860 * 179.97438 * 24 15 14 40 40 H 1.08004 * 119.36670 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1993 -0.8000 5 6 4.6865 -1.1989 -0.7994 6 1 5.0495 -1.1755 0.2280 7 8 5.1629 -0.0477 -1.4993 8 6 5.1971 -2.4641 -1.4918 9 7 6.6571 -2.5231 -1.3866 10 6 7.3306 -3.5577 -1.9276 11 8 6.7265 -4.4417 -2.5033 12 7 8.6737 -3.6121 -1.8303 13 6 9.3618 -4.7318 -2.2970 14 6 10.7296 -4.8304 -2.0933 15 6 11.4038 -5.9700 -2.5725 16 6 12.7996 -6.1210 -2.3921 17 1 13.2320 -7.1085 -2.3274 18 6 13.6197 -4.9899 -2.2976 19 7 13.1342 -3.8061 -2.5662 20 14 15.4075 -5.1724 -1.7877 21 1 16.1125 -6.0466 -2.7592 22 1 16.0543 -3.8360 -1.7636 23 1 15.4767 -5.7799 -0.4344 24 6 10.6460 -6.9569 -3.2392 25 6 9.3016 -6.7714 -3.3935 26 7 8.7008 -5.6919 -2.9267 27 1 -1.0499 -0.0002 -0.0004 28 1 3.0094 -0.0651 1.0256 29 1 3.0089 0.9220 -0.4555 30 1 2.7933 -1.1335 -1.8255 31 1 2.7937 -2.1206 -0.3444 32 1 4.8778 -0.0027 -2.4223 33 1 4.7626 -3.3413 -1.0123 34 1 4.9091 -2.4445 -2.5429 35 1 7.1392 -1.8179 -0.9269 36 1 9.1618 -2.8725 -1.4358 37 1 11.2673 -4.0490 -1.5767 38 1 13.7022 -3.0225 -2.5004 39 1 11.1232 -7.8466 -3.6230 40 1 8.7180 -7.5242 -3.9026 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871729894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:37 Heat of formation + Delta-G solvation = 3.202940 kcal Electronic energy + Delta-G solvation = -23078.612716 eV Core-core repulsion = 19473.829161 eV Total energy + Delta-G solvation = -3604.783555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86872 -38.63403 -37.76341 -34.99738 -34.42317 -33.89585 -33.68384 -31.73858 -30.49193 -29.16414 -27.85605 -25.96826 -24.33261 -22.00610 -21.91232 -21.54446 -20.00577 -18.47624 -18.04380 -17.63960 -16.85674 -16.53543 -15.84954 -15.28477 -15.10595 -14.87875 -14.60182 -14.23322 -14.18026 -14.07272 -13.43682 -13.24560 -13.06489 -12.83611 -12.76097 -12.55576 -12.09490 -11.83185 -11.41085 -11.23661 -11.19954 -10.89895 -10.78088 -10.42095 -10.28333 -10.22496 -10.13713 -9.73062 -9.56411 -9.36100 -8.81475 -7.92860 -7.70542 -7.00850 -6.73414 -4.60588 2.46894 2.52988 2.71728 2.83220 3.01211 3.02195 3.05249 3.26095 3.85838 3.88356 3.95011 4.10656 4.43550 4.53104 4.65448 4.73001 4.79362 5.03273 5.10213 5.26491 5.50986 5.61758 5.69870 5.70718 5.72414 5.85695 5.97241 6.55484 6.62490 6.69336 6.81523 6.97519 7.13895 7.28690 7.30151 7.32699 7.44195 7.50602 7.88529 8.13217 8.41444 8.47719 8.74324 8.78071 9.19322 9.73952 10.12952 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.002382 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.224945 B =11750.695493 C =12557.906901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.186 4.186 3 C -0.010 4.010 4 C -0.144 4.144 5 C 0.096 3.904 6 H 0.108 0.892 7 O -0.558 6.558 8 C 0.111 3.889 9 N -0.750 5.750 10 C 0.691 3.309 11 O -0.535 6.535 12 N -0.667 5.667 13 C 0.354 3.646 14 C -0.240 4.240 15 C 0.145 3.855 16 C -0.457 4.457 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.281 4.281 25 C 0.118 3.882 26 N -0.551 5.551 27 H 0.216 0.784 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.378 0.622 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.405 0.595 37 H 0.129 0.871 38 H 0.281 0.719 39 H 0.102 0.898 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 9.832 5.525 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.186 4.186 3 C -0.046 4.046 4 C -0.182 4.182 5 C 0.037 3.963 6 H 0.126 0.874 7 O -0.364 6.364 8 C -0.014 4.014 9 N -0.409 5.409 10 C 0.390 3.610 11 O -0.407 6.407 12 N -0.315 5.315 13 C 0.127 3.873 14 C -0.266 4.266 15 C 0.136 3.864 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.142 4.142 19 N -0.423 5.423 20 Si 0.739 3.261 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.305 4.305 25 C -0.036 4.036 26 N -0.270 5.270 27 H 0.233 0.767 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.226 0.774 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.239 0.761 37 H 0.147 0.853 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.381 9.474 5.435 18.865 hybrid contribution 1.725 0.485 0.153 1.798 sum -13.657 9.958 5.588 17.802 Atomic orbital electron populations 1.24926 0.96023 1.00999 1.01180 1.23210 0.94656 1.00385 1.00331 1.18672 0.84387 0.99869 1.01680 1.22175 0.95311 0.98972 1.01760 1.22203 0.92349 0.84623 0.97133 0.87406 1.86583 1.77126 1.44162 1.28504 1.21778 0.80352 0.97995 1.01283 1.45052 1.06782 1.26221 1.62836 1.16095 0.81987 0.82543 0.80370 1.91008 1.66897 1.37913 1.44856 1.42548 1.05091 1.20271 1.63598 1.17976 0.88000 0.86686 0.94594 1.21551 0.90431 1.04048 1.10568 1.17572 0.93149 0.89541 0.86120 1.19524 0.91326 0.93818 1.44222 0.90112 1.25931 1.01340 0.94661 0.92280 1.69741 1.38126 0.99484 1.34913 0.86267 0.81256 0.78362 0.80235 1.18939 1.20313 1.18827 1.21705 0.95418 1.03394 1.09992 1.21489 0.91966 0.93712 0.96434 1.67209 1.39039 1.03037 1.17733 0.76737 0.89454 0.88791 0.90684 0.90073 0.77388 0.90902 0.91493 0.77112 0.76079 0.85332 0.90793 0.88000 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.67 19.25 29.55 0.57 -1.11 16 2 C -0.19 -1.59 13.34 -37.12 -0.50 -2.09 16 3 C -0.01 -0.06 5.60 -29.52 -0.17 -0.23 16 4 C -0.14 -0.94 4.85 -26.74 -0.13 -1.07 16 5 C 0.10 0.72 3.00 -26.74 -0.08 0.64 16 6 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 7 O -0.56 -4.43 12.82 -35.23 -0.45 -4.88 16 8 C 0.11 1.21 5.31 -4.04 -0.02 1.19 16 9 N -0.75 -10.07 5.51 -65.23 -0.36 -10.43 16 10 C 0.69 13.37 8.52 -86.91 -0.74 12.63 16 11 O -0.54 -12.74 14.60 5.30 0.08 -12.66 16 12 N -0.67 -13.33 5.40 -15.86 -0.09 -13.41 16 13 C 0.35 8.71 7.42 -154.68 -1.15 7.56 16 14 C -0.24 -6.13 8.60 -38.46 -0.33 -6.46 16 15 C 0.14 3.83 5.58 -106.55 -0.59 3.23 16 16 C -0.46 -11.80 9.13 -37.65 -0.34 -12.14 16 17 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 18 C 0.08 1.84 5.30 -17.34 -0.09 1.75 16 19 N -0.80 -19.72 10.83 55.55 0.60 -19.12 16 20 Si 0.91 18.04 29.57 -169.99 -5.03 13.02 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 24 C -0.28 -6.97 9.85 -39.07 -0.38 -7.35 16 25 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 26 N -0.55 -14.36 7.86 -12.76 -0.10 -14.46 16 27 H 0.22 0.98 7.80 -54.10 -0.42 0.56 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.61 7.82 -51.93 -0.41 0.21 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.38 2.10 9.05 45.56 0.41 2.51 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 4.35 8.49 -40.82 -0.35 4.00 16 36 H 0.40 6.65 8.72 -40.82 -0.36 6.30 16 37 H 0.13 3.25 6.28 -52.49 -0.33 2.92 16 38 H 0.28 6.33 8.29 -40.82 -0.34 6.00 16 39 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 40 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -33.81 354.03 -8.54 -42.35 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -4.38 Total: 15.03 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -4.16 Total: -0.77 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.06 Total: -57.42 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.37 Total: -17.54 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.81 -8.54 -42.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.555 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds