Wall clock time and date at job start Tue Mar 31 2020 08:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99729 * 2 1 4 4 H 1.09000 * 109.98964 * 358.91827 * 3 2 1 5 5 O 1.44045 * 109.99010 * 237.71719 * 3 2 1 6 6 C 1.44386 * 107.03622 * 214.19693 * 5 3 2 7 7 C 1.54993 * 103.48929 * 40.01082 * 6 5 3 8 8 C 1.54102 * 109.87656 * 120.00588 * 3 2 1 9 9 H 1.08992 * 110.48948 * 2.63981 * 8 3 2 10 10 N 1.46502 * 110.48318 * 240.13049 * 8 3 2 11 11 C 1.34772 * 119.99886 * 156.84927 * 10 8 3 12 12 O 1.21579 * 120.00124 * 359.97438 * 11 10 8 13 13 N 1.34784 * 120.00219 * 179.97438 * 11 10 8 14 14 C 1.39451 * 120.00078 * 184.81941 * 13 11 10 15 15 C 1.38647 * 119.64809 * 185.82663 * 14 13 11 16 16 C 1.40818 * 118.67642 * 179.72480 * 15 14 13 17 17 C 1.41547 * 121.00021 * 180.25406 * 16 15 14 18 18 H 1.07999 * 120.00195 * 146.65221 * 17 16 15 19 19 C 1.40030 * 119.99586 * 326.65254 * 17 16 15 20 20 N 1.30740 * 119.99648 * 168.30286 * 19 17 16 21 21 Si 1.86803 * 120.00226 * 348.30709 * 19 17 16 22 22 H 1.48501 * 109.47004 * 92.68497 * 21 19 17 23 23 H 1.48502 * 109.46829 * 212.68693 * 21 19 17 24 24 H 1.48495 * 109.47041 * 332.68371 * 21 19 17 25 25 C 1.41162 * 118.00279 * 0.27553 * 16 15 14 26 26 C 1.36592 * 119.13320 * 359.97438 * 25 16 15 27 27 N 1.32073 * 121.25431 * 359.97438 * 26 25 16 28 28 H 1.08002 * 119.99899 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00309 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00305 * 180.02562 * 2 1 3 31 31 H 1.09001 * 110.61617 * 281.51064 * 6 5 3 32 32 H 1.09002 * 110.75039 * 158.57999 * 6 5 3 33 33 H 1.09000 * 110.90609 * 204.77507 * 7 6 5 34 34 H 1.08999 * 110.93710 * 81.18683 * 7 6 5 35 35 H 0.96998 * 120.00120 * 336.84062 * 10 8 3 36 36 H 0.97000 * 119.99237 * 4.81869 * 13 11 10 37 37 H 1.08005 * 120.66020 * 0.02562 * 15 14 13 38 38 H 0.97003 * 120.00313 * 179.97438 * 20 19 17 39 39 H 1.08004 * 120.43379 * 180.02562 * 25 16 15 40 40 H 1.07989 * 119.37325 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3627 2.1399 -0.0193 5 8 2.9357 1.3702 -1.1444 6 6 4.1159 2.0948 -0.7361 7 6 4.3865 1.5676 0.6961 8 6 2.9530 1.3966 1.2550 9 1 2.8792 0.4815 1.8424 10 7 2.5771 2.5570 2.0664 11 6 2.8686 2.5822 3.3820 12 8 3.4430 1.6417 3.8955 13 7 2.5232 3.6500 4.1285 14 6 2.9125 3.7213 5.4656 15 6 2.4528 4.7610 6.2593 16 6 2.8540 4.8097 7.6083 17 6 2.4099 5.8461 8.4640 18 1 2.2393 5.6458 9.5114 19 6 2.1917 7.1312 7.9523 20 7 1.5699 8.0257 8.6752 21 14 2.7889 7.5674 6.2369 22 1 1.7001 7.3240 5.2569 23 1 3.1789 8.9998 6.1980 24 1 3.9625 6.7254 5.8924 25 6 3.7128 3.7942 8.0814 26 6 4.1180 2.8124 7.2226 27 7 3.7211 2.7970 5.9630 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 3.9214 3.1672 -0.7200 32 1 4.9552 1.8680 -1.3936 33 1 4.9471 2.2977 1.2799 34 1 4.9092 0.6116 0.6669 35 1 2.1187 3.3073 1.6568 36 1 2.0040 4.3689 3.7354 37 1 1.7962 5.5158 5.8524 38 1 1.4190 8.9161 8.3210 39 1 4.0446 3.7932 9.1093 40 1 4.7746 2.0334 7.5806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871733441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:17 Heat of formation + Delta-G solvation = -27.550311 kcal Electronic energy + Delta-G solvation = -24163.341396 eV Core-core repulsion = 20557.224280 eV Total energy + Delta-G solvation = -3606.117116 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.78176 -40.76528 -39.66802 -36.23374 -35.58216 -35.55699 -34.77163 -33.19262 -31.97034 -30.45780 -28.81942 -27.89598 -24.22187 -24.16995 -23.85543 -22.31474 -21.66123 -21.07619 -19.78349 -19.43068 -18.29986 -17.51058 -17.44318 -17.02658 -16.51752 -16.49385 -16.15227 -15.91638 -15.73247 -15.14701 -14.87711 -14.82827 -14.74810 -14.51774 -14.09601 -13.51061 -13.45641 -13.11498 -12.76851 -12.63965 -12.60324 -12.36473 -12.14330 -12.08582 -11.85864 -11.59390 -11.39959 -11.18084 -10.83181 -10.61998 -10.12307 -10.05616 -9.73697 -8.99652 -8.92423 -6.72424 0.59156 0.76411 1.18048 1.23680 1.39712 1.44298 1.48839 2.10285 2.15738 2.70747 2.89213 3.13433 3.48911 3.54324 3.57995 3.84962 3.98348 4.01398 4.20545 4.23572 4.41307 4.45638 4.60602 4.65116 4.71256 4.75876 4.82470 4.85591 4.96508 5.01094 5.13215 5.28769 5.36755 5.51180 5.61360 5.65405 5.69252 5.81836 5.84581 6.11298 6.27932 6.52115 6.69735 6.85246 7.48171 7.72860 8.14146 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.003435 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.998562 B = 8148.534170 C = 8514.866667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.176 4.176 3 C 0.108 3.892 4 H 0.092 0.908 5 O -0.380 6.380 6 C 0.048 3.952 7 C -0.164 4.164 8 C 0.139 3.861 9 H 0.086 0.914 10 N -0.721 5.721 11 C 0.695 3.305 12 O -0.570 6.570 13 N -0.663 5.663 14 C 0.383 3.617 15 C -0.321 4.321 16 C 0.116 3.884 17 C -0.473 4.473 18 H 0.065 0.935 19 C 0.051 3.949 20 N -0.842 5.842 21 Si 0.968 3.032 22 H -0.242 1.242 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.280 4.280 26 C 0.130 3.870 27 N -0.569 5.569 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.422 0.578 37 H 0.120 0.880 38 H 0.297 0.703 39 H 0.121 0.879 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -7.104 -20.319 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.050 3.950 4 H 0.110 0.890 5 O -0.299 6.299 6 C -0.028 4.028 7 C -0.203 4.203 8 C 0.033 3.967 9 H 0.104 0.896 10 N -0.380 5.380 11 C 0.395 3.605 12 O -0.444 6.444 13 N -0.313 5.313 14 C 0.153 3.847 15 C -0.347 4.347 16 C 0.108 3.892 17 C -0.504 4.504 18 H 0.083 0.917 19 C -0.166 4.166 20 N -0.468 5.468 21 Si 0.791 3.209 22 H -0.167 1.167 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.303 4.303 26 C -0.022 4.022 27 N -0.289 5.289 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.248 0.752 36 H 0.260 0.740 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.379 -8.523 -20.592 22.289 hybrid contribution -0.552 1.825 0.619 2.005 sum -0.173 -6.698 -19.972 21.066 Atomic orbital electron populations 1.24131 0.95318 1.03501 0.96775 1.22838 0.96379 0.97348 1.02901 1.22069 0.91763 0.97270 0.83881 0.89024 1.88993 1.30892 1.76985 1.33056 1.23709 0.88198 0.96449 0.94404 1.23531 0.96429 1.03159 0.97189 1.22108 0.94121 0.88927 0.91518 0.89568 1.44998 1.64465 1.22597 1.05911 1.16120 0.79823 0.82697 0.81844 1.91000 1.45534 1.35949 1.71877 1.42496 1.57019 1.23180 1.08560 1.17941 0.91792 0.91044 0.83897 1.21305 1.12895 1.04034 0.96452 1.17887 0.87773 0.92281 0.91263 1.19462 1.39872 0.94043 0.96975 0.91665 1.26835 0.91209 0.95576 1.02950 1.69632 1.30385 1.06304 1.40463 0.85457 0.80805 0.76864 0.77806 1.16671 1.20490 1.18610 1.21931 1.05775 1.00853 1.01734 1.22092 0.96003 0.96169 0.87961 1.67420 1.17909 1.27765 1.15810 0.86441 0.87404 0.86545 0.90806 0.86998 0.90614 0.89420 0.75224 0.73978 0.86288 0.89212 0.86103 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 14.32 67.79 0.97 -1.31 16 2 C -0.18 -3.02 8.95 25.65 0.23 -2.79 16 3 C 0.11 1.89 3.59 30.22 0.11 2.00 16 4 H 0.09 1.32 7.29 -2.39 -0.02 1.30 16 5 O -0.38 -7.24 11.18 -148.98 -1.67 -8.90 16 6 C 0.05 0.74 7.72 72.66 0.56 1.30 16 7 C -0.16 -3.19 6.88 31.89 0.22 -2.97 16 8 C 0.14 2.97 2.99 45.98 0.14 3.10 16 9 H 0.09 2.26 7.16 -2.39 -0.02 2.25 16 10 N -0.72 -16.07 5.10 -453.11 -2.31 -18.38 16 11 C 0.70 23.22 8.51 179.05 1.52 24.74 16 12 O -0.57 -24.44 14.32 -3.96 -0.06 -24.49 16 13 N -0.66 -22.50 5.40 -322.36 -1.74 -24.24 16 14 C 0.38 16.77 7.40 132.76 0.98 17.76 16 15 C -0.32 -14.65 6.96 23.00 0.16 -14.49 16 16 C 0.12 5.81 5.09 -21.11 -0.11 5.70 16 17 C -0.47 -25.39 9.66 23.52 0.23 -25.16 16 18 H 0.07 3.77 8.06 -2.91 -0.02 3.74 16 19 C 0.05 2.56 5.48 85.29 0.47 3.03 16 20 N -0.84 -43.73 13.92 21.84 0.30 -43.43 16 21 Si 0.97 39.70 24.49 68.60 1.68 41.38 16 22 H -0.24 -8.74 6.71 99.48 0.67 -8.08 16 23 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.26 -11.39 6.70 99.48 0.67 -10.73 16 25 C -0.28 -12.90 9.85 22.60 0.22 -12.68 16 26 C 0.13 5.68 11.10 84.27 0.94 6.62 16 27 N -0.57 -26.69 7.90 -194.27 -1.53 -28.23 16 28 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.11 1.31 7.85 -2.91 -0.02 1.29 16 30 H 0.12 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.69 8.06 -2.39 -0.02 1.67 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 6.22 8.33 -92.71 -0.77 5.45 16 36 H 0.42 10.77 8.72 -92.71 -0.81 9.96 16 37 H 0.12 5.07 4.79 -2.91 -0.01 5.05 16 38 H 0.30 13.75 8.29 -92.71 -0.77 12.98 16 39 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 40 H 0.16 5.84 8.06 -2.92 -0.02 5.82 16 Total: -1.00 -69.23 336.53 0.74 -68.49 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.57 Total: 32.95 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 6.64 Total: 4.85 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -5.28 Total: -114.27 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.72 Total: -33.40 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.68 Total: 41.38 kcal Total: -69.23 0.74 -68.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.939 kcal (2) G-P(sol) polarization free energy of solvation -69.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds