Wall clock time and date at job start Tue Mar 31 2020 09:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35786 * 116.99735 * 2 1 4 4 C 1.38624 * 120.08252 * 0.02562 * 3 2 1 5 5 C 1.38045 * 120.17403 * 179.97438 * 4 3 2 6 6 C 1.39078 * 120.31906 * 359.97438 * 5 4 3 7 7 N 1.40167 * 119.91869 * 179.97438 * 6 5 4 8 8 C 1.34785 * 119.99376 * 144.89071 * 7 6 5 9 9 O 1.21585 * 120.00176 * 4.62627 * 8 7 6 10 10 N 1.34775 * 119.99682 * 184.62366 * 8 7 6 11 11 C 1.46502 * 120.00199 * 0.02562 * 10 8 7 12 12 C 1.46505 * 119.99895 * 180.02562 * 10 8 7 13 13 H 1.08992 * 109.46667 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46647 * 239.99992 * 12 10 8 15 15 C 1.50699 * 109.47125 * 120.00083 * 12 10 8 16 16 H 1.07998 * 120.00345 * 5.27955 * 15 12 10 17 17 C 1.37879 * 119.99747 * 185.28503 * 15 12 10 18 18 N 1.31520 * 119.99884 * 5.11472 * 17 15 12 19 19 Si 1.86798 * 119.99920 * 185.12211 * 17 15 12 20 20 H 1.48501 * 109.47489 * 94.99650 * 19 17 15 21 21 H 1.48503 * 109.47006 * 214.99864 * 19 17 15 22 22 H 1.48501 * 109.47148 * 334.99532 * 19 17 15 23 23 C 1.38403 * 120.15283 * 0.26662 * 6 5 4 24 24 C 1.39686 * 119.83196 * 359.48105 * 23 6 5 25 25 C 1.43198 * 120.16333 * 180.25770 * 24 23 6 26 26 N 3.53034 * 165.85496 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46954 * 299.99857 * 1 2 3 29 29 H 1.09001 * 109.47045 * 59.99634 * 1 2 3 30 30 H 1.08007 * 119.91344 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.84553 * 179.97438 * 5 4 3 32 32 H 0.96995 * 120.00686 * 324.89343 * 7 6 5 33 33 H 1.09003 * 109.46976 * 270.00078 * 11 10 8 34 34 H 1.09005 * 109.47066 * 29.99854 * 11 10 8 35 35 H 1.08994 * 109.47025 * 150.00291 * 11 10 8 36 36 H 1.09005 * 109.47014 * 294.91070 * 14 12 10 37 37 H 1.08999 * 109.47292 * 54.91211 * 14 12 10 38 38 H 1.08996 * 109.46721 * 174.91508 * 14 12 10 39 39 H 0.97002 * 119.99605 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.08281 * 179.75071 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2920 2.3735 0.0005 5 6 1.9167 3.6046 0.0011 6 6 3.3050 3.6874 0.0016 7 7 3.9306 4.9417 0.0016 8 6 5.0856 5.1186 0.6734 9 8 5.6286 4.1717 1.2089 10 7 5.6386 6.3452 0.7515 11 6 4.9840 7.4863 0.1067 12 6 6.8943 6.5375 1.4812 13 1 7.2271 5.5832 1.8893 14 6 6.6732 7.5309 2.6237 15 6 7.9432 7.0763 0.5429 16 1 7.6778 7.3379 -0.4708 17 6 9.2417 7.2353 0.9785 18 7 9.5876 6.8237 2.1787 19 14 10.5093 8.0355 -0.1360 20 1 10.6014 9.4838 0.1787 21 1 11.8323 7.3967 0.0806 22 1 10.1021 7.8619 -1.5535 23 6 4.0703 2.5341 -0.0039 24 6 3.4448 1.2851 0.0009 25 6 4.2297 0.0874 0.0007 26 7 4.8523 -0.8627 0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2134 2.3169 0.0005 31 1 1.3246 4.5077 0.0011 32 1 3.5323 5.6824 -0.4818 33 1 5.3506 7.5856 -0.9150 34 1 3.9059 7.3260 0.0919 35 1 5.2085 8.3961 0.6633 36 1 6.4279 8.5098 2.2116 37 1 5.8524 7.1852 3.2521 38 1 7.5818 7.6056 3.2211 39 1 10.5011 6.9359 2.4853 40 1 5.1482 2.5998 -0.0076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880877852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:09 Heat of formation + Delta-G solvation = -16.202593 kcal Electronic energy + Delta-G solvation = -24063.894729 eV Core-core repulsion = 20458.269687 eV Total energy + Delta-G solvation = -3605.625042 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83371 -40.86842 -38.74725 -37.68079 -37.02913 -35.53892 -34.51285 -32.48328 -31.49912 -29.81358 -28.03446 -27.53766 -27.21253 -25.11627 -24.09145 -22.56854 -20.74760 -20.45067 -19.04878 -18.77439 -18.28742 -17.40582 -17.25910 -16.73622 -16.67851 -16.37112 -15.89752 -15.34169 -15.04140 -14.94144 -14.82245 -14.43573 -14.26407 -14.13058 -13.98688 -13.52975 -13.50388 -13.39919 -13.02952 -12.93388 -12.84009 -12.75342 -12.52979 -12.28599 -12.20374 -12.08401 -12.00378 -11.17712 -11.06141 -10.79524 -10.50538 -10.04909 -9.38540 -8.71161 -8.13612 -6.28121 -0.24883 0.30995 1.41904 1.43561 1.52883 1.55608 1.75281 1.87629 2.24591 2.27752 2.43797 2.83249 2.85417 3.14240 3.18731 3.84178 4.00586 4.19456 4.37200 4.40557 4.46906 4.53850 4.65369 4.69895 4.81800 4.84072 4.86829 4.90452 5.02415 5.09307 5.15285 5.20957 5.38243 5.48850 5.54446 5.70621 5.83355 5.97873 6.13987 6.26894 6.31200 6.46096 6.81749 7.14763 7.39301 7.68584 8.92344 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022458 B = 0.003303 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.460396 B = 8473.961935 C = 9186.013962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.337 6.337 3 C 0.161 3.839 4 C -0.172 4.172 5 C -0.049 4.049 6 C 0.120 3.880 7 N -0.670 5.670 8 C 0.689 3.311 9 O -0.630 6.630 10 N -0.611 5.611 11 C 0.079 3.921 12 C 0.276 3.724 13 H 0.012 0.988 14 C -0.126 4.126 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.014 3.986 18 N -0.921 5.921 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.291 1.291 22 H -0.268 1.268 23 C -0.055 4.055 24 C -0.072 4.072 25 C 0.282 3.718 26 N -0.471 5.471 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.188 0.812 31 H 0.182 0.818 32 H 0.425 0.575 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.027 0.973 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.704 -1.011 -6.966 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.250 6.250 3 C 0.112 3.888 4 C -0.190 4.190 5 C -0.070 4.070 6 C 0.024 3.976 7 N -0.322 5.322 8 C 0.391 3.609 9 O -0.511 6.511 10 N -0.345 5.345 11 C -0.063 4.063 12 C 0.173 3.827 13 H 0.030 0.970 14 C -0.185 4.185 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.192 1.192 23 C -0.079 4.079 24 C -0.077 4.077 25 C -0.032 4.032 26 N -0.148 5.148 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.205 0.795 31 H 0.200 0.800 32 H 0.266 0.734 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.089 -3.246 -6.449 25.148 hybrid contribution 1.183 0.842 -0.347 1.493 sum -22.906 -2.404 -6.796 24.013 Atomic orbital electron populations 1.23530 0.75069 1.05880 1.03631 1.86092 1.24704 1.26453 1.87745 1.18930 0.89158 0.86296 0.94440 1.21358 1.02052 0.89195 1.06433 1.21320 0.90441 1.00091 0.95143 1.17431 0.92232 0.83584 1.04315 1.42476 1.23864 1.11909 1.53949 1.16212 0.81128 0.83788 0.79762 1.90866 1.64608 1.41351 1.54315 1.47431 1.25405 1.06290 1.55350 1.21827 0.97302 0.89201 0.97943 1.18457 0.79353 0.95031 0.89824 0.96958 1.21819 0.99425 0.99150 0.98098 1.21617 0.94071 1.43285 0.98507 0.91831 1.25742 1.00253 0.95935 0.96643 1.70095 1.19255 1.46856 1.19769 0.85486 0.77861 0.78795 0.79122 1.19232 1.21751 1.19214 1.21017 1.00530 0.89956 0.96379 1.15189 0.89426 0.86759 1.16356 1.25821 0.92431 0.92690 0.92235 1.81142 1.09908 1.12304 1.11431 0.87039 0.90353 0.89919 0.79486 0.80041 0.73420 0.92587 0.88570 0.90540 0.92673 0.95352 0.93132 0.92810 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.34 -6.47 9.92 -91.15 -0.90 -7.37 16 3 C 0.16 3.28 6.69 22.82 0.15 3.44 16 4 C -0.17 -2.07 9.02 22.32 0.20 -1.86 16 5 C -0.05 -0.66 9.95 22.43 0.22 -0.44 16 6 C 0.12 2.92 6.29 38.05 0.24 3.16 16 7 N -0.67 -17.51 5.18 -317.18 -1.64 -19.16 16 8 C 0.69 27.31 8.12 179.05 1.45 28.77 16 9 O -0.63 -31.77 13.12 -3.98 -0.05 -31.82 16 10 N -0.61 -24.28 2.75 -844.83 -2.33 -26.60 16 11 C 0.08 2.13 9.35 127.77 1.19 3.33 16 12 C 0.28 14.01 2.51 44.24 0.11 14.12 16 13 H 0.01 0.77 6.88 -2.39 -0.02 0.76 16 14 C -0.13 -5.80 8.84 71.98 0.64 -5.16 16 15 C -0.54 -28.66 8.34 25.60 0.21 -28.45 16 16 H 0.06 3.26 7.52 -2.91 -0.02 3.24 16 17 C 0.01 0.76 5.29 84.65 0.45 1.21 16 18 N -0.92 -54.02 11.98 21.45 0.26 -53.77 16 19 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 C -0.06 -1.75 8.40 22.66 0.19 -1.56 16 24 C -0.07 -2.07 5.75 -21.22 -0.12 -2.19 16 25 C 0.28 9.76 14.86 88.33 1.31 11.07 16 26 N -0.47 -18.13 18.54 19.00 0.35 -17.78 16 27 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.31 7.66 -2.39 -0.02 0.29 16 29 H 0.08 0.24 7.66 -2.39 -0.02 0.23 16 30 H 0.19 0.55 6.29 -2.91 -0.02 0.54 16 31 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 32 H 0.42 7.25 6.62 -92.71 -0.61 6.63 16 33 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 34 H 0.10 1.59 6.44 -2.38 -0.02 1.58 16 35 H 0.08 2.09 6.53 -2.39 -0.02 2.07 16 36 H 0.05 2.25 6.88 -2.38 -0.02 2.23 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 2.61 6.83 -2.39 -0.02 2.59 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.12 4.71 6.23 -2.91 -0.02 4.69 16 Total: -1.00 -81.62 341.85 5.56 -76.07 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.48 Total: 8.70 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 7.37 Total: 26.62 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -3.36 Total: -117.31 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.96 Total: -39.20 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -81.62 5.56 -76.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880877852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.865 kcal (2) G-P(sol) polarization free energy of solvation -81.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds