Wall clock time and date at job start Tue Mar 31 2020 07:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46752 * 141.04988 * 4 3 2 6 6 H 1.08997 * 109.47179 * 304.99447 * 5 4 3 7 7 C 1.53006 * 109.46804 * 184.99874 * 5 4 3 8 8 O 1.42903 * 109.47100 * 305.00026 * 7 5 4 9 9 N 1.46505 * 109.47133 * 64.99896 * 5 4 3 10 10 C 1.34775 * 119.99618 * 204.99440 * 9 5 4 11 11 O 1.21580 * 120.00126 * 0.02562 * 10 9 5 12 12 N 1.34776 * 119.99542 * 179.97438 * 10 9 5 13 13 C 1.39248 * 119.99569 * 184.86245 * 12 10 9 14 14 C 1.39688 * 119.57157 * 174.58120 * 13 12 10 15 15 C 1.38644 * 119.49397 * 179.97438 * 14 13 12 16 16 C 1.38352 * 118.67260 * 359.97438 * 15 14 13 17 17 C 1.40577 * 119.13214 * 0.02562 * 16 15 14 18 18 C 1.41330 * 119.79054 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99828 * 359.97438 * 18 17 16 20 20 C 1.40021 * 120.00167 * 179.97438 * 18 17 16 21 21 N 1.30746 * 120.00015 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00024 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47388 * 120.00201 * 22 20 18 25 25 H 1.48501 * 109.46964 * 239.99964 * 22 20 18 26 26 N 1.31898 * 119.57899 * 354.30022 * 13 12 10 27 27 H 1.09000 * 109.46834 * 218.94775 * 1 2 3 28 28 H 1.08997 * 109.47111 * 338.95237 * 1 2 3 29 29 H 1.09000 * 109.46739 * 98.95002 * 1 2 3 30 30 H 1.08998 * 109.47636 * 21.04774 * 4 3 2 31 31 H 1.09004 * 109.47074 * 261.04319 * 4 3 2 32 32 H 1.09000 * 109.46967 * 65.00085 * 7 5 4 33 33 H 1.09001 * 109.46852 * 184.99846 * 7 5 4 34 34 H 0.96698 * 114.00159 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00072 * 25.00273 * 9 5 4 36 36 H 0.97001 * 120.00059 * 5.14519 * 12 10 9 37 37 H 1.07998 * 120.25191 * 359.95208 * 14 13 12 38 38 H 1.08003 * 120.66699 * 180.02562 * 15 14 13 39 39 H 1.08006 * 120.43787 * 179.97438 * 16 15 14 40 40 H 0.96996 * 119.99781 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6269 1.1242 -0.9069 6 1 4.1925 1.0137 -1.9004 7 6 6.1519 1.0480 -1.0058 8 8 6.7163 1.0757 0.3068 9 7 4.2381 2.4202 -0.3451 10 6 4.1104 3.4929 -1.1509 11 8 4.3174 3.3849 -2.3441 12 7 3.7522 4.6850 -0.6342 13 6 3.5216 5.7685 -1.4779 14 6 3.0414 6.9671 -0.9451 15 6 2.8129 8.0451 -1.7866 16 6 3.0702 7.8985 -3.1380 17 6 3.5526 6.6665 -3.6131 18 6 3.8196 6.5012 -4.9911 19 1 3.6526 7.3198 -5.6754 20 6 4.3007 5.2762 -5.4691 21 7 4.5024 4.2850 -4.6406 22 14 4.6543 5.0580 -7.2903 23 1 4.3462 6.3203 -8.0091 24 1 6.0876 4.7187 -7.4791 25 1 3.8108 3.9617 -7.8304 26 7 3.7647 5.6516 -2.7690 27 1 -0.3633 -0.7992 0.6460 28 1 -0.3633 0.9591 0.3691 29 1 -0.3633 -0.1599 -1.0152 30 1 4.4823 -0.9569 -0.3691 31 1 4.4812 0.1622 1.0152 32 1 6.4378 0.1220 -1.5048 33 1 6.5218 1.8985 -1.5785 34 1 7.6822 1.0310 0.3206 35 1 4.0728 2.5062 0.6068 36 1 3.6591 4.7892 0.3257 37 1 2.8493 7.0534 0.1141 38 1 2.4422 8.9808 -1.3948 39 1 2.9019 8.7195 -3.8193 40 1 4.8360 3.4365 -4.9717 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:26 Heat of formation + Delta-G solvation = 26.972718 kcal Electronic energy + Delta-G solvation = -24518.986132 eV Core-core repulsion = 20915.233312 eV Total energy + Delta-G solvation = -3603.752820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.57533 -38.08692 -36.91844 -35.18409 -34.01748 -33.42071 -32.92105 -30.99790 -30.20651 -28.94122 -28.09209 -25.70039 -25.44759 -22.55122 -21.32932 -20.67837 -19.73218 -18.12902 -17.50329 -17.06308 -16.59384 -16.04621 -15.35434 -14.78008 -14.56042 -14.36722 -14.17471 -13.94286 -13.72418 -13.63888 -13.48849 -13.10305 -12.99897 -12.90044 -12.62220 -12.18871 -11.85499 -11.58449 -11.41985 -11.13642 -10.89663 -10.58271 -10.42099 -10.06189 -9.86319 -9.67563 -9.63495 -9.58759 -9.02968 -8.97658 -8.38058 -7.89470 -7.14849 -6.87341 -6.05930 -4.33751 2.78565 2.81286 2.88462 3.17707 3.20002 3.23596 3.31174 3.32734 4.10482 4.20089 4.29886 4.42164 4.81483 4.99914 5.02463 5.28809 5.37039 5.45125 5.53364 5.58750 5.64979 5.69690 5.86655 6.05992 6.10022 6.11610 6.17517 6.53963 6.68386 6.86601 6.90570 7.07661 7.29421 7.44473 7.62820 7.68314 7.75820 7.82585 7.87292 8.23547 8.36502 8.74494 8.86751 9.12058 9.68187 10.33248 10.54770 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.004753 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.566986 B = 5890.100808 C = 6559.714771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.194 4.194 3 C -0.183 4.183 4 C -0.006 4.006 5 C 0.181 3.819 6 H 0.102 0.898 7 C 0.062 3.938 8 O -0.572 6.572 9 N -0.745 5.745 10 C 0.666 3.334 11 O -0.467 6.467 12 N -0.673 5.673 13 C 0.388 3.612 14 C -0.358 4.358 15 C -0.036 4.036 16 C -0.308 4.308 17 C 0.271 3.729 18 C -0.426 4.426 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.648 5.648 22 Si 0.893 3.107 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.276 1.276 26 N -0.470 5.470 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.375 0.625 35 H 0.386 0.614 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -10.348 9.513 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.194 4.194 3 C -0.183 4.183 4 C -0.043 4.043 5 C 0.074 3.926 6 H 0.120 0.880 7 C -0.017 4.017 8 O -0.377 6.377 9 N -0.404 5.404 10 C 0.364 3.636 11 O -0.332 6.332 12 N -0.321 5.321 13 C 0.148 3.852 14 C -0.384 4.384 15 C -0.060 4.060 16 C -0.331 4.331 17 C 0.146 3.854 18 C -0.457 4.457 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.266 5.266 22 Si 0.717 3.283 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.201 1.201 26 N -0.189 5.189 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.221 0.779 35 H 0.219 0.781 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.306 -11.483 8.135 14.076 hybrid contribution 0.283 0.777 0.419 0.927 sum 0.590 -10.707 8.554 13.717 Atomic orbital electron populations 1.18815 0.84962 1.02756 1.02877 1.22348 0.93901 1.01539 1.01595 1.22208 0.93515 1.01239 1.01361 1.18865 0.84434 0.99078 1.01960 1.20666 0.91623 0.81890 0.98418 0.87996 1.22746 0.94273 1.00549 0.84163 1.86424 1.25032 1.97600 1.28611 1.45191 1.76816 1.08155 1.10285 1.16436 0.80446 0.80316 0.86388 1.91372 1.49430 1.81880 1.10476 1.42556 1.72022 1.08739 1.08798 1.18356 0.92637 0.84036 0.90197 1.20449 1.24022 0.95605 0.98353 1.20535 0.96010 0.95906 0.93553 1.21617 1.16600 0.99948 0.94918 1.18405 0.87923 0.86037 0.93029 1.19591 1.36573 0.97813 0.91723 0.90017 1.26188 0.95896 0.96361 0.98796 1.70380 1.22076 1.00744 1.33414 0.86509 0.78503 0.79215 0.84033 1.18636 1.20158 1.20149 1.68701 1.21848 1.29754 0.98553 0.90596 0.90285 0.90320 0.88721 0.88632 0.93196 0.92028 0.77853 0.78149 0.77284 0.89215 0.88695 0.88657 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.39 10.32 34.37 0.35 -0.04 16 2 C -0.19 -2.68 14.13 -37.12 -0.52 -3.21 16 3 C -0.18 -2.55 13.06 -37.12 -0.48 -3.04 16 4 C -0.01 -0.07 4.97 -29.52 -0.15 -0.22 16 5 C 0.18 2.57 2.34 -67.92 -0.16 2.41 16 6 H 0.10 1.71 7.57 -51.93 -0.39 1.32 16 7 C 0.06 0.78 6.85 37.16 0.25 1.04 16 8 O -0.57 -6.40 12.83 -35.23 -0.45 -6.85 16 9 N -0.75 -11.91 4.73 -58.67 -0.28 -12.19 16 10 C 0.67 14.11 8.49 -86.92 -0.74 13.37 16 11 O -0.47 -11.99 11.77 5.29 0.06 -11.93 16 12 N -0.67 -14.00 5.39 -15.79 -0.09 -14.08 16 13 C 0.39 9.78 7.43 -155.00 -1.15 8.63 16 14 C -0.36 -8.31 9.96 -38.89 -0.39 -8.69 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 17 C 0.27 7.79 6.55 -85.00 -0.56 7.23 16 18 C -0.43 -11.95 9.14 -37.74 -0.34 -12.29 16 19 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 20 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 21 N -0.65 -18.17 8.99 55.55 0.50 -17.67 16 22 Si 0.89 19.50 29.56 -169.99 -5.02 14.48 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 N -0.47 -13.50 5.74 -10.26 -0.06 -13.56 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.04 7.73 -51.93 -0.40 0.64 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.38 2.72 9.12 45.56 0.42 3.14 16 35 H 0.39 5.30 8.62 -40.82 -0.35 4.95 16 36 H 0.39 6.51 8.72 -40.82 -0.36 6.15 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 40 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -35.17 349.93 -9.26 -44.42 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -4.44 Total: 15.03 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.76 Total: -2.92 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.08 Total: -57.50 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.39 Total: -18.78 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.17 -9.26 -44.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.397 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds