Wall clock time and date at job start Tue Mar 31 2020 07:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46752 * 141.04988 * 4 3 2 6 6 H 1.08997 * 109.47179 * 304.99447 * 5 4 3 7 7 C 1.53006 * 109.46804 * 184.99874 * 5 4 3 8 8 O 1.42903 * 109.47100 * 305.00026 * 7 5 4 9 9 N 1.46505 * 109.47133 * 64.99896 * 5 4 3 10 10 C 1.34775 * 119.99618 * 204.99440 * 9 5 4 11 11 O 1.21580 * 120.00126 * 0.02562 * 10 9 5 12 12 N 1.34776 * 119.99542 * 179.97438 * 10 9 5 13 13 C 1.39248 * 119.99569 * 184.86245 * 12 10 9 14 14 C 1.39688 * 119.57157 * 174.58120 * 13 12 10 15 15 C 1.38644 * 119.49397 * 179.97438 * 14 13 12 16 16 C 1.38352 * 118.67260 * 359.97438 * 15 14 13 17 17 C 1.40577 * 119.13214 * 0.02562 * 16 15 14 18 18 C 1.41330 * 119.79054 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99828 * 359.97438 * 18 17 16 20 20 C 1.40021 * 120.00167 * 179.97438 * 18 17 16 21 21 N 1.30746 * 120.00015 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00024 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47388 * 120.00201 * 22 20 18 25 25 H 1.48501 * 109.46964 * 239.99964 * 22 20 18 26 26 N 1.31898 * 119.57899 * 354.30022 * 13 12 10 27 27 H 1.09000 * 109.46834 * 218.94775 * 1 2 3 28 28 H 1.08997 * 109.47111 * 338.95237 * 1 2 3 29 29 H 1.09000 * 109.46739 * 98.95002 * 1 2 3 30 30 H 1.08998 * 109.47636 * 21.04774 * 4 3 2 31 31 H 1.09004 * 109.47074 * 261.04319 * 4 3 2 32 32 H 1.09000 * 109.46967 * 65.00085 * 7 5 4 33 33 H 1.09001 * 109.46852 * 184.99846 * 7 5 4 34 34 H 0.96698 * 114.00159 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00072 * 25.00273 * 9 5 4 36 36 H 0.97001 * 120.00059 * 5.14519 * 12 10 9 37 37 H 1.07998 * 120.25191 * 359.95208 * 14 13 12 38 38 H 1.08003 * 120.66699 * 180.02562 * 15 14 13 39 39 H 1.08006 * 120.43787 * 179.97438 * 16 15 14 40 40 H 0.96996 * 119.99781 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6269 1.1242 -0.9069 6 1 4.1925 1.0137 -1.9004 7 6 6.1519 1.0480 -1.0058 8 8 6.7163 1.0757 0.3068 9 7 4.2381 2.4202 -0.3451 10 6 4.1104 3.4929 -1.1509 11 8 4.3174 3.3849 -2.3441 12 7 3.7522 4.6850 -0.6342 13 6 3.5216 5.7685 -1.4779 14 6 3.0414 6.9671 -0.9451 15 6 2.8129 8.0451 -1.7866 16 6 3.0702 7.8985 -3.1380 17 6 3.5526 6.6665 -3.6131 18 6 3.8196 6.5012 -4.9911 19 1 3.6526 7.3198 -5.6754 20 6 4.3007 5.2762 -5.4691 21 7 4.5024 4.2850 -4.6406 22 14 4.6543 5.0580 -7.2903 23 1 4.3462 6.3203 -8.0091 24 1 6.0876 4.7187 -7.4791 25 1 3.8108 3.9617 -7.8304 26 7 3.7647 5.6516 -2.7690 27 1 -0.3633 -0.7992 0.6460 28 1 -0.3633 0.9591 0.3691 29 1 -0.3633 -0.1599 -1.0152 30 1 4.4823 -0.9569 -0.3691 31 1 4.4812 0.1622 1.0152 32 1 6.4378 0.1220 -1.5048 33 1 6.5218 1.8985 -1.5785 34 1 7.6822 1.0310 0.3206 35 1 4.0728 2.5062 0.6068 36 1 3.6591 4.7892 0.3257 37 1 2.8493 7.0534 0.1141 38 1 2.4422 8.9808 -1.3948 39 1 2.9019 8.7195 -3.8193 40 1 4.8360 3.4365 -4.9717 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:25 Heat of formation + Delta-G solvation = 1.814098 kcal Electronic energy + Delta-G solvation = -24520.077091 eV Core-core repulsion = 20915.233312 eV Total energy + Delta-G solvation = -3604.843779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19974 -39.75062 -38.25833 -36.26865 -35.80303 -34.80492 -34.61725 -32.34017 -32.07905 -30.60466 -29.26631 -27.40475 -26.65728 -24.23440 -23.18830 -22.14547 -21.29929 -19.84264 -18.98635 -18.28377 -18.08323 -17.49811 -16.67756 -16.39483 -16.25176 -15.96896 -15.61641 -15.30288 -15.14573 -14.76573 -14.66205 -14.51520 -14.35579 -14.03445 -13.96212 -13.81665 -13.53936 -12.95097 -12.78193 -12.70888 -12.52774 -12.45515 -12.30378 -11.73124 -11.51320 -11.04266 -10.85763 -10.82197 -10.63108 -10.58070 -9.89290 -9.78785 -9.08798 -8.76488 -8.00359 -6.39314 0.97753 1.29681 1.39816 1.52313 1.54423 1.73335 1.76622 1.85745 2.27699 2.58567 3.05256 3.32608 3.39090 3.44145 3.96167 4.08906 4.20321 4.36615 4.39790 4.53679 4.67411 4.72195 4.75206 4.77370 4.81980 4.85696 4.91868 4.97900 5.05446 5.07655 5.12968 5.30416 5.68260 5.75417 5.87207 5.94010 6.05530 6.32761 6.44163 6.74189 6.84031 6.90065 7.09375 7.27015 8.03974 8.39971 8.60409 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.004753 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.566986 B = 5890.100808 C = 6559.714771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.214 4.214 3 C -0.208 4.208 4 C 0.006 3.994 5 C 0.177 3.823 6 H 0.070 0.930 7 C 0.075 3.925 8 O -0.574 6.574 9 N -0.726 5.726 10 C 0.659 3.341 11 O -0.514 6.514 12 N -0.663 5.663 13 C 0.365 3.635 14 C -0.348 4.348 15 C -0.033 4.033 16 C -0.331 4.331 17 C 0.237 3.763 18 C -0.466 4.466 19 H 0.085 0.915 20 C 0.010 3.990 21 N -0.683 5.683 22 Si 0.973 3.027 23 H -0.255 1.255 24 H -0.270 1.270 25 H -0.272 1.272 26 N -0.504 5.504 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.395 0.605 35 H 0.400 0.600 36 H 0.415 0.585 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -10.899 11.026 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.214 4.214 3 C -0.208 4.208 4 C -0.030 4.030 5 C 0.071 3.929 6 H 0.089 0.911 7 C -0.004 4.004 8 O -0.382 6.382 9 N -0.385 5.385 10 C 0.358 3.642 11 O -0.382 6.382 12 N -0.314 5.314 13 C 0.125 3.875 14 C -0.373 4.373 15 C -0.057 4.057 16 C -0.354 4.354 17 C 0.111 3.889 18 C -0.497 4.497 19 H 0.103 0.897 20 C -0.216 4.216 21 N -0.301 5.301 22 Si 0.794 3.206 23 H -0.178 1.178 24 H -0.195 1.195 25 H -0.197 1.197 26 N -0.223 5.223 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.244 0.756 35 H 0.235 0.765 36 H 0.251 0.749 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.232 -12.051 9.740 15.497 hybrid contribution 0.268 0.969 0.161 1.018 sum 0.500 -11.083 9.902 14.870 Atomic orbital electron populations 1.19010 0.83104 1.03949 1.03734 1.23286 0.95315 1.01327 1.01474 1.22824 0.94535 1.01716 1.01739 1.18871 0.83277 0.98884 1.02008 1.20768 0.92855 0.81723 0.97566 0.91144 1.22446 0.92932 1.00365 0.84665 1.86366 1.26953 1.97555 1.27311 1.44986 1.75555 1.07487 1.10457 1.16702 0.80077 0.81142 0.86317 1.91362 1.51403 1.82691 1.12756 1.42428 1.71570 1.07918 1.09446 1.18858 0.92716 0.85929 0.90025 1.20911 1.21600 0.94498 1.00334 1.21007 0.94571 0.97610 0.92525 1.21803 1.17561 0.99432 0.96606 1.18901 0.88811 0.87356 0.93830 1.19908 1.38679 0.98889 0.92224 0.89713 1.27038 0.95240 0.95573 1.03751 1.70580 1.23039 1.00992 1.35536 0.85303 0.78372 0.79252 0.77662 1.17787 1.19486 1.19717 1.68662 1.22962 1.30508 1.00179 0.88107 0.89851 0.89979 0.86179 0.87209 0.90268 0.95832 0.75594 0.76503 0.74878 0.85278 0.84509 0.87782 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.82 10.32 70.18 0.72 -0.09 16 2 C -0.21 -5.76 14.13 31.12 0.44 -5.32 16 3 C -0.21 -5.60 13.06 31.12 0.41 -5.19 16 4 C 0.01 0.14 4.97 28.79 0.14 0.28 16 5 C 0.18 5.00 2.34 44.99 0.11 5.10 16 6 H 0.07 2.47 7.57 -2.39 -0.02 2.45 16 7 C 0.08 1.86 6.85 71.98 0.49 2.35 16 8 O -0.57 -11.65 12.83 -148.98 -1.91 -13.56 16 9 N -0.73 -23.03 4.73 -457.80 -2.16 -25.20 16 10 C 0.66 28.49 8.49 179.06 1.52 30.01 16 11 O -0.51 -27.62 11.77 -3.97 -0.05 -27.67 16 12 N -0.66 -27.44 5.39 -322.12 -1.74 -29.17 16 13 C 0.36 18.44 7.43 133.26 0.99 19.43 16 14 C -0.35 -15.44 9.96 22.72 0.23 -15.21 16 15 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 16 C -0.33 -17.17 9.83 22.87 0.22 -16.95 16 17 C 0.24 14.04 6.55 40.19 0.26 14.30 16 18 C -0.47 -27.18 9.14 23.46 0.21 -26.96 16 19 H 0.08 4.64 7.85 -2.91 -0.02 4.62 16 20 C 0.01 0.54 5.50 85.29 0.47 1.01 16 21 N -0.68 -40.12 8.99 21.84 0.20 -39.92 16 22 Si 0.97 41.45 29.56 68.60 2.03 43.48 16 23 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 N -0.50 -29.86 5.74 -186.36 -1.07 -30.93 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.10 7.73 -2.39 -0.02 2.08 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.39 4.82 9.12 -74.06 -0.68 4.14 16 35 H 0.40 10.46 8.62 -92.71 -0.80 9.66 16 36 H 0.41 13.04 8.72 -92.71 -0.81 12.23 16 37 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 38 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 40 H 0.27 14.82 8.29 -92.71 -0.77 14.05 16 Total: -1.00 -80.27 349.93 0.57 -79.71 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -1.18 Total: 41.75 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.45 Total: 1.51 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -4.77 Total: -125.22 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.96 Total: -41.23 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -80.27 0.57 -79.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.522 kcal (2) G-P(sol) polarization free energy of solvation -80.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds