Wall clock time and date at job start Tue Mar 31 2020 08:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.67287 * 2 1 4 4 C 1.52913 * 109.53365 * 120.55345 * 2 1 3 5 5 N 1.46857 * 109.04061 * 70.48199 * 4 2 1 6 6 C 1.34778 * 120.37543 * 237.57915 * 5 4 2 7 7 O 1.21571 * 120.00189 * 354.63707 * 6 5 4 8 8 N 1.34779 * 119.99868 * 174.91247 * 6 5 4 9 9 C 1.39243 * 120.00239 * 185.50229 * 8 6 5 10 10 C 1.39685 * 119.57337 * 18.15781 * 9 8 6 11 11 C 1.38651 * 119.49461 * 179.97438 * 10 9 8 12 12 C 1.38360 * 118.66812 * 0.02562 * 11 10 9 13 13 C 1.40574 * 119.13420 * 359.97438 * 12 11 10 14 14 C 1.41324 * 119.78778 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00217 * 359.97438 * 14 13 12 16 16 C 1.40027 * 119.99950 * 179.97438 * 14 13 12 17 17 N 1.30745 * 120.00121 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99997 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47230 * 120.00185 * 18 16 14 21 21 H 1.48498 * 109.47394 * 240.00213 * 18 16 14 22 22 N 1.31908 * 119.57423 * 197.88221 * 9 8 6 23 23 C 1.46852 * 119.23935 * 57.30818 * 5 4 2 24 24 C 1.53398 * 108.77633 * 302.65541 * 23 5 4 25 25 C 1.51294 * 108.42543 * 49.42550 * 24 23 5 26 26 O 1.20756 * 120.80734 * 127.06100 * 25 24 23 27 27 H 1.09004 * 109.47500 * 180.50447 * 1 2 3 28 28 H 1.09006 * 109.46939 * 300.50080 * 1 2 3 29 29 H 1.09004 * 109.47136 * 60.50020 * 1 2 3 30 30 H 1.08993 * 109.48336 * 310.58888 * 4 2 1 31 31 H 1.09003 * 109.42452 * 190.32944 * 4 2 1 32 32 H 0.97008 * 120.00038 * 5.49529 * 8 6 5 33 33 H 1.07994 * 120.25707 * 0.02562 * 10 9 8 34 34 H 1.07996 * 120.66718 * 179.97438 * 11 10 9 35 35 H 1.07998 * 120.43048 * 179.97438 * 12 11 10 36 36 H 0.96995 * 120.00059 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.58706 * 62.44503 * 23 5 4 38 38 H 1.09004 * 109.58813 * 182.86540 * 23 5 4 39 39 H 1.09003 * 109.67265 * 169.16098 * 24 23 5 40 40 H 1.09006 * 109.67047 * 289.65567 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0412 -0.7326 1.2410 5 7 1.7643 -2.1677 1.0983 6 6 1.0250 -2.8143 2.0212 7 8 0.6653 -2.2341 3.0272 8 7 0.6892 -4.1057 1.8316 9 6 -0.1685 -4.7406 2.7260 10 6 -0.9688 -3.9738 3.5763 11 6 -1.8226 -4.6078 4.4659 12 6 -1.8549 -5.9909 4.4838 13 6 -1.0251 -6.7063 3.6031 14 6 -1.0473 -8.1194 3.6093 15 1 -1.7001 -8.6462 4.2896 16 6 -0.2230 -8.8364 2.7336 17 7 0.5677 -8.1987 1.9104 18 14 -0.2518 -10.7042 2.7423 19 1 -1.2242 -11.1795 3.7592 20 1 -0.6562 -11.1993 1.4020 21 1 1.1015 -11.2187 3.0724 22 7 -0.2189 -6.0584 2.7558 23 6 2.2972 -2.8889 -0.0647 24 6 1.7872 -2.2104 -1.3425 25 6 2.0393 -0.7231 -1.2275 26 8 2.6324 -0.1274 -2.0945 27 1 -0.3634 -1.0276 0.0090 28 1 -0.3633 0.5216 0.8855 29 1 -0.3633 0.5061 -0.8945 30 1 1.5327 -0.3484 2.1252 31 1 3.1156 -0.5756 1.3377 32 1 1.0449 -4.5929 1.0719 33 1 -0.9234 -2.8955 3.5404 34 1 -2.4493 -4.0335 5.1321 35 1 -2.5091 -6.5140 5.1656 36 1 1.1384 -8.6954 1.3035 37 1 3.3866 -2.8595 -0.0452 38 1 1.9571 -3.9242 -0.0400 39 1 2.3203 -2.6073 -2.2065 40 1 0.7186 -2.3945 -1.4543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:35 Heat of formation + Delta-G solvation = -9.226948 kcal Electronic energy + Delta-G solvation = -24779.458377 eV Core-core repulsion = 21174.135822 eV Total energy + Delta-G solvation = -3605.322555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.91662 -39.59863 -38.02182 -36.48440 -34.56831 -33.60918 -32.89220 -31.36129 -30.41197 -29.17528 -26.90273 -25.47522 -24.46792 -23.40268 -21.87487 -21.62512 -20.02073 -18.79207 -18.12550 -17.48299 -16.49311 -16.07158 -15.82524 -15.62000 -15.12657 -14.88791 -14.60870 -14.53841 -14.23022 -14.06834 -13.55739 -13.24144 -12.92183 -12.75331 -12.39054 -12.30301 -12.16060 -11.96810 -11.84522 -11.59127 -11.33081 -11.27073 -11.07841 -10.90297 -10.67156 -10.10531 -9.93307 -9.66664 -9.33880 -9.11057 -8.76839 -8.05153 -7.70550 -7.09935 -6.44142 -4.52495 1.66087 2.55822 2.69380 2.91985 3.07587 3.11880 3.22239 3.58336 3.77183 3.92928 3.99919 4.43089 4.50527 4.58432 4.75064 4.76656 4.96362 5.09930 5.37308 5.40418 5.42481 5.46994 5.62094 5.65442 5.72983 5.89658 6.00347 6.11440 6.32107 6.39454 6.67421 6.79426 6.89932 6.96300 7.14455 7.20276 7.47511 7.56316 7.88040 7.99225 8.13062 8.33991 8.67424 8.81752 8.97946 10.02478 10.28673 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003849 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.480210 B = 7272.333450 C = 8308.215735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.155 4.155 3 H 0.105 0.895 4 C 0.139 3.861 5 N -0.633 5.633 6 C 0.712 3.288 7 O -0.562 6.562 8 N -0.657 5.657 9 C 0.371 3.629 10 C -0.313 4.313 11 C -0.049 4.049 12 C -0.290 4.290 13 C 0.280 3.720 14 C -0.435 4.435 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.724 5.724 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.274 1.274 22 N -0.508 5.508 23 C 0.116 3.884 24 C -0.187 4.187 25 C 0.370 3.630 26 O -0.457 6.457 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.402 0.598 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.269 0.731 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 9.933 -6.573 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 H 0.123 0.877 4 C 0.015 3.985 5 N -0.371 5.371 6 C 0.414 3.586 7 O -0.438 6.438 8 N -0.306 5.306 9 C 0.136 3.864 10 C -0.338 4.338 11 C -0.074 4.074 12 C -0.313 4.313 13 C 0.154 3.846 14 C -0.467 4.467 15 H 0.104 0.896 16 C -0.152 4.152 17 N -0.346 5.346 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.199 1.199 22 N -0.227 5.227 23 C -0.008 4.008 24 C -0.226 4.226 25 C 0.245 3.755 26 O -0.330 6.330 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.240 0.760 33 H 0.151 0.849 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.133 10.151 -7.032 13.022 hybrid contribution -0.282 -0.748 0.077 0.803 sum 3.850 9.404 -6.956 12.314 Atomic orbital electron populations 1.21703 0.91859 1.03293 1.02698 1.22320 0.99018 1.01045 0.95138 0.87694 1.21374 1.00704 0.78625 0.97756 1.47267 1.55972 1.09530 1.24374 1.15633 0.78668 0.81509 0.82792 1.90830 1.58355 1.67238 1.27410 1.42470 1.48844 1.10002 1.29317 1.18227 0.88555 0.90362 0.89239 1.21642 1.05509 1.00846 1.05757 1.20812 0.96087 0.94186 0.96279 1.21708 1.08441 0.93920 1.07262 1.18160 0.86741 0.93229 0.86470 1.19599 1.19919 0.89833 1.17358 0.89649 1.26025 0.94218 1.00584 0.94397 1.70121 1.14725 1.36596 1.13177 0.86293 0.79034 0.82538 0.79065 1.18409 1.19920 1.19928 1.68009 1.24609 1.03902 1.26195 1.21607 0.99310 0.96602 0.83293 1.22739 1.05024 0.94584 1.00211 1.24746 0.74172 0.90986 0.85566 1.90406 1.31781 1.70468 1.40361 0.91629 0.90897 0.92388 0.87228 0.91060 0.75983 0.84854 0.88373 0.88273 0.91954 0.90312 0.88596 0.88032 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.01 37.16 0.33 -0.98 16 2 C -0.15 -1.45 3.20 -91.53 -0.29 -1.74 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.14 1.47 5.77 -3.89 -0.02 1.44 16 5 N -0.63 -7.95 2.57 -178.66 -0.46 -8.41 16 6 C 0.71 12.43 8.13 -86.92 -0.71 11.73 16 7 O -0.56 -11.54 12.51 5.30 0.07 -11.48 16 8 N -0.66 -12.70 5.32 -15.79 -0.08 -12.78 16 9 C 0.37 8.95 7.52 -154.99 -1.16 7.79 16 10 C -0.31 -7.46 8.84 -38.89 -0.34 -7.81 16 11 C -0.05 -1.14 10.15 -39.38 -0.40 -1.54 16 12 C -0.29 -7.19 9.83 -38.66 -0.38 -7.57 16 13 C 0.28 7.58 6.55 -85.00 -0.56 7.03 16 14 C -0.44 -11.41 9.14 -37.74 -0.34 -11.76 16 15 H 0.09 2.11 7.85 -52.48 -0.41 1.70 16 16 C 0.07 1.78 5.50 -17.34 -0.10 1.68 16 17 N -0.72 -18.33 11.46 55.55 0.64 -17.70 16 18 Si 0.91 18.11 29.56 -169.99 -5.02 13.08 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 N -0.51 -13.53 7.89 -10.26 -0.08 -13.61 16 23 C 0.12 1.14 6.45 -3.64 -0.02 1.12 16 24 C -0.19 -1.67 6.04 -27.39 -0.17 -1.83 16 25 C 0.37 3.88 6.04 -28.45 -0.17 3.71 16 26 O -0.46 -6.13 17.89 6.00 0.11 -6.02 16 27 H 0.06 0.72 7.30 -51.93 -0.38 0.34 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.11 1.28 6.94 -51.93 -0.36 0.92 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 6.92 6.25 -40.82 -0.26 6.67 16 33 H 0.13 3.13 5.29 -52.55 -0.28 2.85 16 34 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 36 H 0.27 6.14 8.29 -40.82 -0.34 5.80 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.96 5.51 -51.93 -0.29 0.68 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.11 0.92 7.73 -51.93 -0.40 0.52 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -31.83 330.81 -9.08 -40.90 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.89 Total: 9.75 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -4.33 Total: 1.27 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.01 Total: -52.50 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.17 Total: -17.50 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.83 -9.08 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.674 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds