Wall clock time and date at job start Tue Mar 31 2020 08:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.67287 * 2 1 4 4 C 1.52913 * 109.53365 * 120.55345 * 2 1 3 5 5 N 1.46857 * 109.04061 * 70.48199 * 4 2 1 6 6 C 1.34778 * 120.37543 * 237.57915 * 5 4 2 7 7 O 1.21571 * 120.00189 * 354.63707 * 6 5 4 8 8 N 1.34779 * 119.99868 * 174.91247 * 6 5 4 9 9 C 1.39243 * 120.00239 * 185.50229 * 8 6 5 10 10 C 1.39685 * 119.57337 * 18.15781 * 9 8 6 11 11 C 1.38651 * 119.49461 * 179.97438 * 10 9 8 12 12 C 1.38360 * 118.66812 * 0.02562 * 11 10 9 13 13 C 1.40574 * 119.13420 * 359.97438 * 12 11 10 14 14 C 1.41324 * 119.78778 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00217 * 359.97438 * 14 13 12 16 16 C 1.40027 * 119.99950 * 179.97438 * 14 13 12 17 17 N 1.30745 * 120.00121 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99997 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47230 * 120.00185 * 18 16 14 21 21 H 1.48498 * 109.47394 * 240.00213 * 18 16 14 22 22 N 1.31908 * 119.57423 * 197.88221 * 9 8 6 23 23 C 1.46852 * 119.23935 * 57.30818 * 5 4 2 24 24 C 1.53398 * 108.77633 * 302.65541 * 23 5 4 25 25 C 1.51294 * 108.42543 * 49.42550 * 24 23 5 26 26 O 1.20756 * 120.80734 * 127.06100 * 25 24 23 27 27 H 1.09004 * 109.47500 * 180.50447 * 1 2 3 28 28 H 1.09006 * 109.46939 * 300.50080 * 1 2 3 29 29 H 1.09004 * 109.47136 * 60.50020 * 1 2 3 30 30 H 1.08993 * 109.48336 * 310.58888 * 4 2 1 31 31 H 1.09003 * 109.42452 * 190.32944 * 4 2 1 32 32 H 0.97008 * 120.00038 * 5.49529 * 8 6 5 33 33 H 1.07994 * 120.25707 * 0.02562 * 10 9 8 34 34 H 1.07996 * 120.66718 * 179.97438 * 11 10 9 35 35 H 1.07998 * 120.43048 * 179.97438 * 12 11 10 36 36 H 0.96995 * 120.00059 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.58706 * 62.44503 * 23 5 4 38 38 H 1.09004 * 109.58813 * 182.86540 * 23 5 4 39 39 H 1.09003 * 109.67265 * 169.16098 * 24 23 5 40 40 H 1.09006 * 109.67047 * 289.65567 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0412 -0.7326 1.2410 5 7 1.7643 -2.1677 1.0983 6 6 1.0250 -2.8143 2.0212 7 8 0.6653 -2.2341 3.0272 8 7 0.6892 -4.1057 1.8316 9 6 -0.1685 -4.7406 2.7260 10 6 -0.9688 -3.9738 3.5763 11 6 -1.8226 -4.6078 4.4659 12 6 -1.8549 -5.9909 4.4838 13 6 -1.0251 -6.7063 3.6031 14 6 -1.0473 -8.1194 3.6093 15 1 -1.7001 -8.6462 4.2896 16 6 -0.2230 -8.8364 2.7336 17 7 0.5677 -8.1987 1.9104 18 14 -0.2518 -10.7042 2.7423 19 1 -1.2242 -11.1795 3.7592 20 1 -0.6562 -11.1993 1.4020 21 1 1.1015 -11.2187 3.0724 22 7 -0.2189 -6.0584 2.7558 23 6 2.2972 -2.8889 -0.0647 24 6 1.7872 -2.2104 -1.3425 25 6 2.0393 -0.7231 -1.2275 26 8 2.6324 -0.1274 -2.0945 27 1 -0.3634 -1.0276 0.0090 28 1 -0.3633 0.5216 0.8855 29 1 -0.3633 0.5061 -0.8945 30 1 1.5327 -0.3484 2.1252 31 1 3.1156 -0.5756 1.3377 32 1 1.0449 -4.5929 1.0719 33 1 -0.9234 -2.8955 3.5404 34 1 -2.4493 -4.0335 5.1321 35 1 -2.5091 -6.5140 5.1656 36 1 1.1384 -8.6954 1.3035 37 1 3.3866 -2.8595 -0.0452 38 1 1.9571 -3.9242 -0.0400 39 1 2.3203 -2.6073 -2.2065 40 1 0.7186 -2.3945 -1.4543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:34 Heat of formation + Delta-G solvation = -27.737988 kcal Electronic energy + Delta-G solvation = -24780.261076 eV Core-core repulsion = 21174.135822 eV Total energy + Delta-G solvation = -3606.125254 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10272 -40.80572 -39.66022 -37.65656 -36.12532 -35.22382 -34.07858 -32.34430 -32.25600 -30.91847 -27.94695 -27.23994 -25.49658 -24.32978 -23.47810 -23.34417 -21.42291 -20.08759 -19.23256 -19.15743 -18.06491 -17.22126 -16.98207 -16.64121 -16.53171 -16.25008 -15.92843 -15.74513 -15.68918 -15.29738 -15.06926 -14.62939 -14.21492 -14.00274 -13.82517 -13.58264 -13.18528 -13.13213 -12.90697 -12.81643 -12.67060 -12.60853 -12.54005 -12.36741 -12.08769 -11.79484 -11.61802 -11.06226 -10.79635 -10.48487 -9.97698 -9.85452 -9.59723 -8.90272 -8.28146 -6.47398 0.78349 0.86218 1.15305 1.40482 1.45160 1.56095 1.59192 2.09535 2.26451 2.71790 2.91504 2.96927 3.62526 3.68402 3.73489 3.95902 3.97885 4.17045 4.29985 4.34904 4.52066 4.56385 4.64074 4.67377 4.70573 4.85215 4.86690 4.89500 4.93565 4.97917 5.04316 5.21646 5.26701 5.42877 5.57813 5.71245 5.77675 6.01624 6.19112 6.31486 6.35791 6.71702 6.84951 7.00914 7.45072 8.13620 8.47606 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003849 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.480210 B = 7272.333450 C = 8308.215735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.147 4.147 3 H 0.122 0.878 4 C 0.136 3.864 5 N -0.620 5.620 6 C 0.712 3.288 7 O -0.595 6.595 8 N -0.655 5.655 9 C 0.364 3.636 10 C -0.325 4.325 11 C -0.048 4.048 12 C -0.311 4.311 13 C 0.247 3.753 14 C -0.467 4.467 15 H 0.089 0.911 16 C 0.029 3.971 17 N -0.752 5.752 18 Si 0.986 3.014 19 H -0.257 1.257 20 H -0.266 1.266 21 H -0.268 1.268 22 N -0.533 5.533 23 C 0.113 3.887 24 C -0.181 4.181 25 C 0.376 3.624 26 O -0.485 6.485 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.411 0.589 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.279 0.721 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 9.857 -7.444 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 H 0.140 0.860 4 C 0.014 3.986 5 N -0.357 5.357 6 C 0.414 3.586 7 O -0.474 6.474 8 N -0.305 5.305 9 C 0.128 3.872 10 C -0.349 4.349 11 C -0.072 4.072 12 C -0.334 4.334 13 C 0.121 3.879 14 C -0.498 4.498 15 H 0.108 0.892 16 C -0.193 4.193 17 N -0.375 5.375 18 Si 0.806 3.194 19 H -0.181 1.181 20 H -0.190 1.190 21 H -0.193 1.193 22 N -0.253 5.253 23 C -0.010 4.010 24 C -0.219 4.219 25 C 0.253 3.747 26 O -0.360 6.360 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.250 0.750 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.843 10.119 -7.941 13.745 hybrid contribution -0.456 -0.597 0.310 0.813 sum 4.387 9.522 -7.631 12.967 Atomic orbital electron populations 1.21679 0.91968 1.02383 1.03316 1.22281 0.98781 1.01667 0.93956 0.86021 1.21565 1.01947 0.77171 0.97941 1.47274 1.54292 1.10288 1.23868 1.15733 0.78849 0.80777 0.83219 1.90789 1.59826 1.67659 1.29128 1.42375 1.48473 1.10754 1.28890 1.18554 0.88929 0.90027 0.89713 1.21869 1.05806 1.01134 1.06140 1.21168 0.95874 0.93970 0.96216 1.21873 1.09027 0.94699 1.07777 1.18650 0.87628 0.94233 0.87381 1.19953 1.21130 0.90177 1.18565 0.89242 1.26892 0.93329 1.05580 0.93503 1.70182 1.14964 1.38856 1.13465 0.85103 0.79128 0.75826 0.79295 1.18070 1.19031 1.19314 1.68036 1.25368 1.04948 1.26922 1.21825 1.00487 0.96264 0.82451 1.22715 1.05513 0.93532 1.00144 1.24950 0.73039 0.91486 0.85186 1.90412 1.33108 1.71100 1.41361 0.93248 0.90817 0.91307 0.88346 0.88908 0.74980 0.84441 0.85306 0.87102 0.91028 0.88153 0.88797 0.86365 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.01 71.98 0.65 -1.76 16 2 C -0.15 -2.46 3.20 -11.38 -0.04 -2.49 16 3 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 4 C 0.14 2.64 5.77 86.28 0.50 3.14 16 5 N -0.62 -14.76 2.57 -837.43 -2.15 -16.92 16 6 C 0.71 24.63 8.13 179.05 1.46 26.09 16 7 O -0.60 -24.49 12.51 -3.94 -0.05 -24.54 16 8 N -0.66 -25.41 5.32 -322.12 -1.71 -27.12 16 9 C 0.36 17.84 7.52 133.26 1.00 18.84 16 10 C -0.32 -15.65 8.84 22.72 0.20 -15.45 16 11 C -0.05 -2.23 10.15 22.40 0.23 -2.00 16 12 C -0.31 -15.64 9.83 22.87 0.22 -15.41 16 13 C 0.25 13.70 6.55 40.19 0.26 13.96 16 14 C -0.47 -24.89 9.14 23.46 0.21 -24.68 16 15 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 16 C 0.03 1.42 5.50 85.29 0.47 1.89 16 17 N -0.75 -38.29 11.46 21.84 0.25 -38.04 16 18 Si 0.99 36.82 29.56 68.60 2.03 38.85 16 19 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 20 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 21 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 22 N -0.53 -28.98 7.89 -186.37 -1.47 -30.45 16 23 C 0.11 2.00 6.45 86.45 0.56 2.56 16 24 C -0.18 -2.83 6.04 30.17 0.18 -2.65 16 25 C 0.38 7.07 6.04 29.48 0.18 7.25 16 26 O -0.48 -12.03 17.89 -1.44 -0.03 -12.05 16 27 H 0.05 1.04 7.30 -2.38 -0.02 1.02 16 28 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 2.21 6.94 -2.39 -0.02 2.19 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 14.14 6.25 -92.70 -0.58 13.56 16 33 H 0.14 6.50 5.29 -3.88 -0.02 6.48 16 34 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.28 12.64 8.29 -92.71 -0.77 11.87 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.76 5.51 -2.38 -0.01 1.74 16 39 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 1.70 7.73 -2.38 -0.02 1.68 16 Total: -1.00 -69.37 330.81 3.45 -65.92 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.50 Total: 35.07 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.09 Total: 9.29 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -5.09 Total: -112.53 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.07 Total: -36.59 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -69.37 3.45 -65.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.181 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds