Wall clock time and date at job start Tue Mar 31 2020 08:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 H 1.08997 * 109.47609 * 54.99665 * 3 2 1 5 5 O 1.42904 * 109.47182 * 294.99751 * 3 2 1 6 6 C 1.50695 * 109.46956 * 175.00080 * 3 2 1 7 7 C 1.35356 * 126.75017 * 125.00150 * 6 3 2 8 8 N 1.35316 * 106.17472 * 180.02562 * 7 6 3 9 9 C 1.46498 * 125.87048 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47235 * 124.99906 * 9 8 7 11 11 C 1.38305 * 119.92910 * 270.25475 * 10 9 8 12 12 C 1.38104 * 120.06272 * 180.25358 * 11 10 9 13 13 C 1.38874 * 119.93265 * 359.47314 * 12 11 10 14 14 O 1.35749 * 120.06890 * 180.29770 * 13 12 11 15 15 C 1.34834 * 117.00013 * 354.46142 * 14 13 12 16 16 H 1.07996 * 120.00021 * 5.05939 * 15 14 13 17 17 C 1.38654 * 119.99707 * 185.05824 * 15 14 13 18 18 N 1.31550 * 120.00182 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99577 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47416 * 119.99910 * 19 17 15 22 22 H 1.48499 * 109.47261 * 240.00285 * 19 17 15 23 23 C 1.38882 * 119.86301 * 0.27303 * 13 12 11 24 24 C 1.38094 * 119.92975 * 0.02562 * 23 13 12 25 25 N 1.28718 * 108.26262 * 0.25925 * 8 7 6 26 26 N 1.28632 * 110.17730 * 359.56132 * 25 8 7 27 27 H 1.09003 * 109.46671 * 59.99650 * 1 2 3 28 28 H 1.08993 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46970 * 300.00404 * 1 2 3 30 30 H 1.09000 * 109.46970 * 239.99596 * 2 1 3 31 31 H 1.08999 * 109.46690 * 119.99851 * 2 1 3 32 32 H 0.96701 * 114.00097 * 300.00446 * 5 3 2 33 33 H 1.07997 * 126.91234 * 0.03533 * 7 6 3 34 34 H 1.09006 * 109.47116 * 5.00055 * 9 8 7 35 35 H 1.08998 * 109.47244 * 245.00210 * 9 8 7 36 36 H 1.07990 * 119.96792 * 0.02562 * 11 10 9 37 37 H 1.08000 * 120.02708 * 179.74272 * 12 11 10 38 38 H 0.97006 * 119.99724 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.03486 * 180.02562 * 23 13 12 40 40 H 1.08006 * 119.96521 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 8 1.6621 2.0814 -1.2211 6 6 3.5419 1.4442 0.1238 7 6 4.4228 2.0411 -0.7127 8 7 5.6531 1.7808 -0.2130 9 6 6.9249 2.2265 -0.7873 10 6 7.7107 2.9791 0.2554 11 6 7.5500 4.3464 0.3870 12 6 8.2726 5.0396 1.3381 13 6 9.1531 4.3606 2.1702 14 8 9.8603 5.0383 3.1101 15 6 9.7492 6.3820 3.1089 16 1 9.0570 6.8660 2.4359 17 6 10.5237 7.1424 3.9717 18 7 11.3664 6.5528 4.7919 19 14 10.3693 9.0040 3.9705 20 1 9.3581 9.4162 2.9641 21 1 9.9445 9.4664 5.3162 22 1 11.6820 9.6094 3.6306 23 6 9.3083 2.9867 2.0391 24 6 8.5875 2.3002 1.0819 25 7 5.5141 1.0690 0.8505 26 7 4.2669 0.8557 1.0818 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0142 1.6541 -2.0139 33 1 4.1905 2.6108 -1.6004 34 1 6.7303 2.8803 -1.6376 35 1 7.4974 1.3602 -1.1187 36 1 6.8616 4.8731 -0.2571 37 1 8.1498 6.1079 1.4376 38 1 11.9085 7.0848 5.3953 39 1 9.9919 2.4558 2.6850 40 1 8.7074 1.2317 0.9797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881285896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:23 Heat of formation + Delta-G solvation = 37.510342 kcal Electronic energy + Delta-G solvation = -23431.255331 eV Core-core repulsion = 19827.959457 eV Total energy + Delta-G solvation = -3603.295874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.19135 -39.22290 -38.07788 -36.99058 -34.47612 -33.02018 -32.41042 -31.08690 -30.38148 -30.17386 -26.72370 -26.27024 -25.19678 -22.58509 -22.12684 -22.01888 -21.31810 -20.39349 -18.15498 -17.77504 -17.16284 -16.50023 -16.33552 -15.74085 -15.24751 -14.83057 -14.69720 -14.44789 -14.38031 -13.75808 -13.68753 -13.51334 -13.19547 -12.86066 -12.67407 -12.36837 -12.28222 -11.84966 -11.74986 -11.45861 -11.34324 -11.19014 -11.12748 -11.02295 -10.82466 -10.73791 -10.51242 -10.44897 -9.90588 -9.48313 -9.13297 -8.97235 -8.34086 -7.42381 -6.57957 -4.16612 1.64102 1.86090 2.09251 2.54404 2.73851 3.06300 3.06748 3.12620 3.86426 3.99966 4.15505 4.40688 4.61724 4.64282 4.80045 4.83224 4.94482 4.96843 5.12946 5.14502 5.22216 5.23742 5.46313 5.50702 5.53436 5.68300 5.75454 5.78467 5.98396 6.04839 6.05936 6.08661 6.24956 6.51392 6.66136 6.72082 6.88885 7.07038 7.15252 7.28501 7.29020 7.63981 7.86571 8.62200 8.87020 9.54102 10.59292 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002669 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.772347 B =10489.713276 C =10940.910593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.199 3.801 4 H 0.114 0.886 5 O -0.553 6.553 6 C -0.068 4.068 7 C -0.046 4.046 8 N -0.276 5.276 9 C 0.172 3.828 10 C -0.228 4.228 11 C -0.046 4.046 12 C -0.238 4.238 13 C 0.166 3.834 14 O -0.169 6.169 15 C -0.394 4.394 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.856 5.856 19 Si 0.943 3.057 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.195 4.195 24 C -0.035 4.035 25 N -0.065 5.065 26 N -0.270 5.270 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.374 0.626 33 H 0.187 0.813 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.272 0.728 39 H 0.121 0.879 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 -8.646 -14.270 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.138 3.862 4 H 0.132 0.868 5 O -0.357 6.357 6 C -0.207 4.207 7 C -0.198 4.198 8 N -0.069 5.069 9 C 0.054 3.946 10 C -0.230 4.230 11 C -0.065 4.065 12 C -0.258 4.258 13 C 0.111 3.889 14 O -0.071 6.071 15 C -0.470 4.470 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.490 5.490 19 Si 0.768 3.232 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.215 4.215 24 C -0.054 4.054 25 N -0.045 5.045 26 N -0.138 5.138 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.221 0.779 33 H 0.204 0.796 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.688 -8.943 -12.352 20.492 hybrid contribution -0.095 1.282 -1.254 1.796 sum -13.784 -7.661 -13.606 20.828 Atomic orbital electron populations 1.21721 0.94933 1.01545 1.02384 1.22150 0.96675 0.96197 1.03504 1.19964 0.84827 0.93681 0.87769 0.86823 1.86615 1.76117 1.57421 1.15501 1.22736 0.98507 1.03643 0.95819 1.23259 0.84352 1.07737 1.04430 1.47927 1.08138 1.33172 1.17683 1.20859 0.79414 0.99501 0.94864 1.18928 1.05862 0.93868 1.04336 1.20562 0.96581 0.92927 0.96419 1.21109 1.02808 1.00970 1.00895 1.19457 0.90054 0.91842 0.87548 1.83980 1.58097 1.21011 1.44009 1.21427 1.24279 0.78076 1.23202 0.88812 1.25348 0.95076 1.00758 0.95290 1.70046 1.22067 1.36446 1.20415 0.85608 0.78635 0.80248 0.78725 1.19020 1.19980 1.19974 1.20212 1.05975 0.92031 1.03248 1.20468 0.93615 0.98205 0.93090 1.78335 1.13200 1.10695 1.02308 1.75024 0.96584 1.20200 1.21949 0.92145 0.92762 0.92551 0.91816 0.90026 0.77868 0.79627 0.87752 0.88274 0.87583 0.85293 0.91807 0.86117 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.81 37.16 0.36 -0.72 16 2 C -0.15 -1.25 5.59 -26.73 -0.15 -1.40 16 3 C 0.20 1.95 3.52 -27.89 -0.10 1.85 16 4 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 5 O -0.55 -4.66 12.35 -35.23 -0.43 -5.09 16 6 C -0.07 -0.85 6.45 -82.78 -0.53 -1.39 16 7 C -0.05 -0.52 10.79 -17.04 -0.18 -0.71 16 8 N -0.28 -3.70 3.43 -62.44 -0.21 -3.91 16 9 C 0.17 1.98 6.58 -5.19 -0.03 1.94 16 10 C -0.23 -3.60 5.26 -104.57 -0.55 -4.15 16 11 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 12 C -0.24 -5.01 9.17 -39.40 -0.36 -5.37 16 13 C 0.17 3.93 6.65 -39.11 -0.26 3.67 16 14 O -0.17 -4.74 9.76 0.04 0.00 -4.73 16 15 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -24.62 13.67 55.48 0.76 -23.87 16 19 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.20 -4.04 9.99 -39.40 -0.39 -4.44 16 24 C -0.03 -0.60 9.69 -39.61 -0.38 -0.99 16 25 N -0.07 -1.09 12.93 60.35 0.78 -0.31 16 26 N -0.27 -4.33 12.39 33.29 0.41 -3.92 16 27 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.81 8.13 -51.93 -0.42 0.38 16 32 H 0.37 1.81 8.86 45.56 0.40 2.22 16 33 H 0.19 1.37 7.94 -52.49 -0.42 0.96 16 34 H 0.10 0.86 8.01 -51.93 -0.42 0.45 16 35 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -32.94 348.31 -5.58 -38.52 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.34 Total: 5.38 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.77 Total: -22.36 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 1.74 Total: -32.00 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.43 Total: -9.83 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.94 -5.58 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881285896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.032 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds