Wall clock time and date at job start Tue Mar 31 2020 08:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 H 1.08997 * 109.47609 * 54.99665 * 3 2 1 5 5 O 1.42904 * 109.47182 * 294.99751 * 3 2 1 6 6 C 1.50695 * 109.46956 * 175.00080 * 3 2 1 7 7 C 1.35356 * 126.75017 * 125.00150 * 6 3 2 8 8 N 1.35316 * 106.17472 * 180.02562 * 7 6 3 9 9 C 1.46498 * 125.87048 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47235 * 124.99906 * 9 8 7 11 11 C 1.38305 * 119.92910 * 270.25475 * 10 9 8 12 12 C 1.38104 * 120.06272 * 180.25358 * 11 10 9 13 13 C 1.38874 * 119.93265 * 359.47314 * 12 11 10 14 14 O 1.35749 * 120.06890 * 180.29770 * 13 12 11 15 15 C 1.34834 * 117.00013 * 354.46142 * 14 13 12 16 16 H 1.07996 * 120.00021 * 5.05939 * 15 14 13 17 17 C 1.38654 * 119.99707 * 185.05824 * 15 14 13 18 18 N 1.31550 * 120.00182 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99577 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47416 * 119.99910 * 19 17 15 22 22 H 1.48499 * 109.47261 * 240.00285 * 19 17 15 23 23 C 1.38882 * 119.86301 * 0.27303 * 13 12 11 24 24 C 1.38094 * 119.92975 * 0.02562 * 23 13 12 25 25 N 1.28718 * 108.26262 * 0.25925 * 8 7 6 26 26 N 1.28632 * 110.17730 * 359.56132 * 25 8 7 27 27 H 1.09003 * 109.46671 * 59.99650 * 1 2 3 28 28 H 1.08993 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46970 * 300.00404 * 1 2 3 30 30 H 1.09000 * 109.46970 * 239.99596 * 2 1 3 31 31 H 1.08999 * 109.46690 * 119.99851 * 2 1 3 32 32 H 0.96701 * 114.00097 * 300.00446 * 5 3 2 33 33 H 1.07997 * 126.91234 * 0.03533 * 7 6 3 34 34 H 1.09006 * 109.47116 * 5.00055 * 9 8 7 35 35 H 1.08998 * 109.47244 * 245.00210 * 9 8 7 36 36 H 1.07990 * 119.96792 * 0.02562 * 11 10 9 37 37 H 1.08000 * 120.02708 * 179.74272 * 12 11 10 38 38 H 0.97006 * 119.99724 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.03486 * 180.02562 * 23 13 12 40 40 H 1.08006 * 119.96521 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 8 1.6621 2.0814 -1.2211 6 6 3.5419 1.4442 0.1238 7 6 4.4228 2.0411 -0.7127 8 7 5.6531 1.7808 -0.2130 9 6 6.9249 2.2265 -0.7873 10 6 7.7107 2.9791 0.2554 11 6 7.5500 4.3464 0.3870 12 6 8.2726 5.0396 1.3381 13 6 9.1531 4.3606 2.1702 14 8 9.8603 5.0383 3.1101 15 6 9.7492 6.3820 3.1089 16 1 9.0570 6.8660 2.4359 17 6 10.5237 7.1424 3.9717 18 7 11.3664 6.5528 4.7919 19 14 10.3693 9.0040 3.9705 20 1 9.3581 9.4162 2.9641 21 1 9.9445 9.4664 5.3162 22 1 11.6820 9.6094 3.6306 23 6 9.3083 2.9867 2.0391 24 6 8.5875 2.3002 1.0819 25 7 5.5141 1.0690 0.8505 26 7 4.2669 0.8557 1.0818 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0142 1.6541 -2.0139 33 1 4.1905 2.6108 -1.6004 34 1 6.7303 2.8803 -1.6376 35 1 7.4974 1.3602 -1.1187 36 1 6.8616 4.8731 -0.2571 37 1 8.1498 6.1079 1.4376 38 1 11.9085 7.0848 5.3953 39 1 9.9919 2.4558 2.6850 40 1 8.7074 1.2317 0.9797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881285896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:22 Heat of formation + Delta-G solvation = 13.433242 kcal Electronic energy + Delta-G solvation = -23432.299392 eV Core-core repulsion = 19827.959457 eV Total energy + Delta-G solvation = -3604.339935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.19261 -40.87683 -38.88434 -38.49649 -35.63318 -34.32853 -33.66280 -32.03651 -31.89088 -31.53671 -28.02578 -27.30448 -26.81059 -23.79945 -23.45880 -22.99457 -22.38106 -21.55791 -19.95067 -19.03878 -18.52953 -17.52880 -17.19016 -16.56813 -16.44776 -16.37591 -16.01378 -15.77904 -15.61072 -15.23377 -15.17817 -14.60141 -14.36795 -14.14783 -13.78344 -13.56477 -13.16995 -13.12137 -12.95860 -12.84666 -12.58497 -12.55503 -12.39157 -12.12406 -11.95564 -11.88914 -11.74890 -11.27215 -11.20609 -10.92994 -10.86890 -10.07180 -9.87324 -9.10889 -8.52970 -6.21964 0.37445 0.52419 0.75847 1.32849 1.39890 1.51391 1.53965 1.70196 2.13543 2.78161 3.10850 3.24986 3.37036 3.43173 3.69891 3.84491 3.89592 4.06565 4.10416 4.13316 4.17619 4.36314 4.40108 4.50031 4.58140 4.65815 4.77394 4.89739 4.93969 4.96190 5.07185 5.08477 5.18665 5.23571 5.31777 5.45758 5.45995 5.61384 5.62510 5.72709 5.96274 6.09746 6.81999 6.91284 7.59508 7.69656 8.70117 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002669 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.772347 B =10489.713276 C =10940.910593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.207 3.793 4 H 0.103 0.897 5 O -0.554 6.554 6 C -0.079 4.079 7 C -0.027 4.027 8 N -0.277 5.277 9 C 0.170 3.830 10 C -0.197 4.197 11 C -0.042 4.042 12 C -0.250 4.250 13 C 0.126 3.874 14 O -0.229 6.229 15 C -0.415 4.415 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.918 5.918 19 Si 1.021 2.979 20 H -0.250 1.250 21 H -0.270 1.270 22 H -0.266 1.266 23 C -0.213 4.213 24 C -0.032 4.032 25 N -0.115 5.115 26 N -0.303 5.303 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.392 0.608 33 H 0.233 0.767 34 H 0.154 0.846 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.274 0.726 39 H 0.112 0.888 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -8.640 -18.378 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.120 0.880 5 O -0.360 6.360 6 C -0.218 4.218 7 C -0.179 4.179 8 N -0.071 5.071 9 C 0.052 3.948 10 C -0.199 4.199 11 C -0.061 4.061 12 C -0.269 4.269 13 C 0.075 3.925 14 O -0.135 6.135 15 C -0.491 4.491 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.556 5.556 19 Si 0.840 3.160 20 H -0.173 1.173 21 H -0.195 1.195 22 H -0.191 1.191 23 C -0.232 4.232 24 C -0.051 4.051 25 N -0.094 5.094 26 N -0.170 5.170 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.242 0.758 33 H 0.249 0.751 34 H 0.171 0.829 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.439 -8.992 -16.509 24.973 hybrid contribution 0.500 0.961 -0.288 1.121 sum -15.939 -8.030 -16.797 24.509 Atomic orbital electron populations 1.21694 0.93969 1.02093 1.02465 1.22076 0.97410 0.95416 1.03027 1.19835 0.83267 0.94143 0.88254 0.87971 1.86599 1.76121 1.57556 1.15724 1.23250 0.99842 1.03385 0.95367 1.23948 0.82911 1.06206 1.04793 1.47924 1.09196 1.32704 1.17237 1.21186 0.78637 1.01011 0.93992 1.19484 1.03586 0.93663 1.03165 1.21013 0.95964 0.93679 0.95436 1.21252 1.03044 1.00950 1.01659 1.20017 0.91133 0.92978 0.88419 1.83951 1.61058 1.21448 1.47007 1.21894 1.24865 0.78565 1.23799 0.87856 1.26650 0.94491 1.06276 0.94638 1.70190 1.24343 1.38600 1.22463 0.84501 0.79194 0.73198 0.79137 1.17286 1.19472 1.19104 1.20455 1.06868 0.91373 1.04500 1.20870 0.92782 0.99595 0.91813 1.78309 1.13685 1.13034 1.04345 1.74966 0.97049 1.21373 1.23578 0.91531 0.92025 0.92967 0.90846 0.91946 0.75806 0.75103 0.82874 0.85721 0.83333 0.86101 0.91694 0.87000 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.81 71.98 0.71 -1.11 16 2 C -0.14 -2.12 5.59 30.60 0.17 -1.95 16 3 C 0.21 3.51 3.52 29.84 0.11 3.61 16 4 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 5 O -0.55 -7.07 12.35 -148.98 -1.84 -8.91 16 6 C -0.08 -1.74 6.45 41.60 0.27 -1.47 16 7 C -0.03 -0.47 10.79 83.49 0.90 0.43 16 8 N -0.28 -6.14 3.43 -351.46 -1.20 -7.35 16 9 C 0.17 2.86 6.58 85.63 0.56 3.43 16 10 C -0.20 -5.47 5.26 -19.83 -0.10 -5.58 16 11 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 12 C -0.25 -10.51 9.17 22.39 0.21 -10.31 16 13 C 0.13 6.24 6.65 22.58 0.15 6.39 16 14 O -0.23 -13.80 9.76 -22.77 -0.22 -14.02 16 15 C -0.42 -24.06 9.49 67.92 0.64 -23.41 16 16 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 17 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 18 N -0.92 -56.35 13.67 21.61 0.30 -56.06 16 19 Si 1.02 42.47 29.55 68.60 2.03 44.50 16 20 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 23 C -0.21 -9.09 9.99 22.39 0.22 -8.87 16 24 C -0.03 -1.05 9.69 22.25 0.22 -0.84 16 25 N -0.11 -3.54 12.93 37.02 0.48 -3.06 16 26 N -0.30 -9.25 12.39 -48.60 -0.60 -9.85 16 27 H 0.07 0.76 7.82 -2.39 -0.02 0.74 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.39 1.84 8.86 -74.06 -0.66 1.19 16 33 H 0.23 1.68 7.94 -2.91 -0.02 1.66 16 34 H 0.15 1.24 8.01 -2.38 -0.02 1.22 16 35 H 0.12 1.61 8.08 -2.39 -0.02 1.59 16 36 H 0.15 3.40 8.06 -2.92 -0.02 3.38 16 37 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 38 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -80.27 348.31 4.08 -76.19 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.41 Total: 20.16 kcal Atomic # 6 Polarization: -46.32 SS G_CDS: 4.73 Total: -41.59 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.03 Total: -76.32 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -2.06 Total: -22.93 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -80.27 4.08 -76.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881285896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.620 kcal (2) G-P(sol) polarization free energy of solvation -80.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds