Wall clock time and date at job start Tue Mar 31 2020 08:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47067 * 2 1 4 4 N 1.46505 * 109.46942 * 119.99811 * 2 1 3 5 5 C 1.34774 * 119.99841 * 275.00185 * 4 2 1 6 6 O 1.21365 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.49370 * 120.00097 * 180.02562 * 5 4 2 8 8 O 1.21358 * 119.99525 * 359.97438 * 7 5 4 9 9 N 1.34774 * 120.00097 * 179.97438 * 7 5 4 10 10 C 1.39112 * 119.99978 * 174.85461 * 9 7 5 11 11 C 1.39702 * 119.57907 * 185.38245 * 10 9 7 12 12 C 1.38655 * 119.49640 * 179.76615 * 11 10 9 13 13 C 1.38351 * 118.66654 * 0.50840 * 12 11 10 14 14 C 1.40593 * 119.13640 * 359.73993 * 13 12 11 15 15 C 1.41340 * 119.78383 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00163 * 359.97438 * 15 14 13 17 17 C 1.40036 * 119.99593 * 179.97438 * 15 14 13 18 18 N 1.30740 * 120.00021 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99516 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47367 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46957 * 120.00391 * 19 17 15 22 22 H 1.48500 * 109.47083 * 240.00176 * 19 17 15 23 23 N 1.31937 * 119.57712 * 5.66329 * 10 9 7 24 24 C 1.53001 * 109.47401 * 239.99633 * 2 1 3 25 25 C 1.53004 * 117.49372 * 60.00176 * 24 2 1 26 26 C 1.53000 * 60.03180 * 107.47770 * 25 24 2 27 27 H 1.09001 * 109.46846 * 60.00619 * 1 2 3 28 28 H 1.09001 * 109.47323 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47222 * 300.00236 * 1 2 3 30 30 H 0.96996 * 120.00451 * 94.99929 * 4 2 1 31 31 H 0.97002 * 119.99887 * 354.85357 * 9 7 5 32 32 H 1.08003 * 120.25850 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.66838 * 180.24749 * 12 11 10 34 34 H 1.08001 * 120.43033 * 179.76991 * 13 12 11 35 35 H 0.97006 * 119.99515 * 179.97438 * 18 17 15 36 36 H 1.08999 * 115.56395 * 274.31331 * 24 2 1 37 37 H 1.09001 * 117.48917 * 214.97983 * 25 24 2 38 38 H 1.08996 * 117.50226 * 359.97330 * 25 24 2 39 39 H 1.09001 * 117.49827 * 107.49614 * 26 25 24 40 40 H 1.08998 * 117.49822 * 252.52422 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8579 1.1593 2.4117 7 6 2.6454 -0.7221 3.5767 8 8 2.9340 -1.8996 3.5222 9 7 2.7745 -0.0496 4.7375 10 6 3.1356 -0.7272 5.8975 11 6 3.1572 -0.0449 7.1164 12 6 3.5127 -0.7232 8.2723 13 6 3.8476 -2.0624 8.1796 14 6 3.8117 -2.6915 6.9228 15 6 4.1508 -4.0592 6.8124 16 1 4.4365 -4.6174 7.6916 17 6 4.1160 -4.6905 5.5629 18 7 3.7705 -4.0146 4.4984 19 14 4.5648 -6.4979 5.4169 20 1 4.9173 -7.0303 6.7576 21 1 3.4072 -7.2530 4.8737 22 1 5.7260 -6.6474 4.5034 23 7 3.4587 -2.0047 5.8316 24 6 2.0401 -0.7213 -1.2492 25 6 1.6358 -0.1495 -2.6096 26 6 3.0744 0.0058 -2.1122 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.2490 -1.6317 1.1528 31 1 2.6157 0.9070 4.7641 32 1 2.8950 1.0019 7.1588 33 1 3.5318 -0.2153 9.2252 34 1 4.1324 -2.6173 9.0612 35 1 3.7469 -4.4519 3.6328 36 1 2.1272 -1.8045 -1.1642 37 1 1.4570 -0.8567 -3.4195 38 1 1.0062 0.7401 -2.6146 39 1 3.8419 -0.5991 -2.5950 40 1 3.3910 0.9976 -1.7896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889772626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:59 Heat of formation + Delta-G solvation = -6.601137 kcal Electronic energy + Delta-G solvation = -24342.477857 eV Core-core repulsion = 20737.269166 eV Total energy + Delta-G solvation = -3605.208691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76523 -40.43381 -39.17637 -38.52741 -36.27242 -35.42887 -34.78636 -32.27407 -31.37291 -31.00470 -27.67865 -26.53684 -24.88010 -23.45151 -23.16064 -22.71500 -21.56475 -20.93081 -19.87999 -18.83175 -18.26560 -17.60888 -16.93491 -16.74422 -16.44915 -16.29117 -15.69066 -15.40797 -15.32823 -15.21037 -14.82273 -14.63025 -14.28450 -13.85773 -13.76882 -13.35988 -13.05302 -12.89968 -12.74498 -12.56875 -12.55268 -12.32480 -12.28450 -11.88772 -11.74061 -11.61215 -11.39777 -11.11889 -10.92549 -10.58816 -10.25616 -9.93939 -9.20159 -8.92332 -8.08953 -6.42907 0.37646 1.02420 1.27076 1.38727 1.42820 1.53927 1.56640 2.27618 2.37841 2.61923 2.91769 2.98143 3.50729 3.57208 3.95140 4.01332 4.08840 4.15254 4.32725 4.37091 4.43974 4.66890 4.69550 4.81321 4.81779 4.90024 4.94093 4.98747 5.01619 5.10918 5.23875 5.26544 5.27324 5.38995 5.63243 5.71244 5.89590 6.00219 6.16679 6.29761 6.54919 6.72113 6.85746 7.03774 7.29264 8.24939 8.55460 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.004273 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.033985 B = 6551.074222 C = 8188.457381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.081 0.919 4 N -0.684 5.684 5 C 0.520 3.480 6 O -0.546 6.546 7 C 0.460 3.540 8 O -0.420 6.420 9 N -0.633 5.633 10 C 0.347 3.653 11 C -0.343 4.343 12 C -0.033 4.033 13 C -0.322 4.322 14 C 0.236 3.764 15 C -0.461 4.461 16 H 0.087 0.913 17 C 0.014 3.986 18 N -0.695 5.695 19 Si 0.977 3.023 20 H -0.257 1.257 21 H -0.270 1.270 22 H -0.270 1.270 23 N -0.506 5.506 24 C -0.177 4.177 25 C -0.150 4.150 26 C -0.183 4.183 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.416 0.584 31 H 0.424 0.576 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.274 0.726 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 5.676 -13.332 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.099 0.901 4 N -0.337 5.337 5 C 0.300 3.700 6 O -0.424 6.424 7 C 0.237 3.763 8 O -0.285 6.285 9 N -0.283 5.283 10 C 0.109 3.891 11 C -0.368 4.368 12 C -0.057 4.057 13 C -0.345 4.345 14 C 0.111 3.889 15 C -0.492 4.492 16 H 0.105 0.895 17 C -0.211 4.211 18 N -0.314 5.314 19 Si 0.798 3.202 20 H -0.180 1.180 21 H -0.195 1.195 22 H -0.195 1.195 23 N -0.226 5.226 24 C -0.195 4.195 25 C -0.187 4.187 26 C -0.220 4.220 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.253 0.747 31 H 0.262 0.738 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.391 5.174 -14.465 15.978 hybrid contribution 0.303 -0.196 1.022 1.084 sum -4.087 4.978 -13.443 14.907 Atomic orbital electron populations 1.22123 0.93725 1.02891 1.02727 1.20718 0.94819 0.96093 0.81613 0.90128 1.45866 1.64317 1.15120 1.08357 1.20102 0.78486 0.86528 0.84845 1.90685 1.50516 1.15955 1.85288 1.20778 0.82063 0.88376 0.85037 1.91203 1.40579 1.13796 1.82903 1.42992 1.66897 1.12369 1.06052 1.19007 0.93753 0.91152 0.85205 1.20963 1.22769 1.01152 0.91918 1.21049 0.93635 0.93384 0.97657 1.21854 1.17718 0.96859 0.98051 1.18871 0.88991 0.94030 0.86999 1.19950 1.39957 0.93841 0.95426 0.89458 1.26995 0.94660 1.04159 0.95306 1.70469 1.25160 1.36752 0.99021 0.85244 0.78446 0.77101 0.79441 1.17997 1.19474 1.19484 1.68604 1.19136 1.04368 1.30502 1.22420 1.06197 0.99780 0.91137 1.23048 0.97248 1.03421 0.94998 1.23143 0.93399 1.01911 1.03506 0.89019 0.91725 0.93877 0.74731 0.73784 0.85276 0.84270 0.87338 0.91544 0.86777 0.86980 0.87596 0.87963 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.32 71.98 0.67 -2.38 16 2 C 0.17 3.70 2.81 44.99 0.13 3.82 16 3 H 0.08 1.92 7.33 -2.39 -0.02 1.90 16 4 N -0.68 -19.00 5.07 -443.93 -2.25 -21.25 16 5 C 0.52 17.96 7.85 87.24 0.69 18.65 16 6 O -0.55 -19.64 16.15 -3.29 -0.05 -19.69 16 7 C 0.46 19.43 7.84 87.24 0.68 20.12 16 8 O -0.42 -20.68 12.24 -3.27 -0.04 -20.72 16 9 N -0.63 -26.67 5.37 -309.71 -1.66 -28.33 16 10 C 0.35 17.15 7.42 133.30 0.99 18.14 16 11 C -0.34 -15.00 9.95 22.72 0.23 -14.77 16 12 C -0.03 -1.44 10.15 22.40 0.23 -1.22 16 13 C -0.32 -16.05 9.83 22.87 0.22 -15.83 16 14 C 0.24 13.45 6.55 40.20 0.26 13.71 16 15 C -0.46 -25.59 9.14 23.47 0.21 -25.38 16 16 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 17 C 0.01 0.74 5.50 85.29 0.47 1.21 16 18 N -0.69 -38.11 8.99 21.84 0.20 -37.91 16 19 Si 0.98 39.14 29.56 68.60 2.03 41.17 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 23 N -0.51 -28.79 5.74 -186.43 -1.07 -29.86 16 24 C -0.18 -2.97 5.35 -10.77 -0.06 -3.03 16 25 C -0.15 -1.83 9.73 30.60 0.30 -1.54 16 26 C -0.18 -2.79 10.18 30.62 0.31 -2.48 16 27 H 0.09 1.32 7.29 -2.39 -0.02 1.30 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.42 11.37 8.02 -92.71 -0.74 10.63 16 31 H 0.42 15.03 8.18 -92.71 -0.76 14.27 16 32 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 34 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.27 13.82 8.29 -92.70 -0.77 13.05 16 36 H 0.11 1.89 8.07 -2.39 -0.02 1.87 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 1.13 7.61 -2.39 -0.02 1.11 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.48 8.05 -2.39 -0.02 1.47 16 Total: -1.00 -69.15 343.49 2.07 -67.08 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.41 Total: 40.48 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.33 Total: 9.03 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -4.79 Total: -117.35 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.09 Total: -40.41 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -69.15 2.07 -67.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889772626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.480 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds