Wall clock time and date at job start Tue Mar 31 2020 07:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00062 * 2 1 4 4 C 1.53002 * 109.47169 * 124.99930 * 3 2 1 5 5 C 1.53002 * 109.47170 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47274 * 180.02562 * 5 4 3 7 7 C 1.34770 * 119.99885 * 180.02562 * 6 5 4 8 8 O 1.21359 * 120.00215 * 359.97438 * 7 6 5 9 9 C 1.49373 * 119.99747 * 179.97438 * 7 6 5 10 10 O 1.21358 * 119.99950 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99638 * 179.97438 * 9 7 6 12 12 C 1.39118 * 119.99790 * 185.58679 * 11 9 7 13 13 C 1.39709 * 119.57557 * 18.91536 * 12 11 9 14 14 C 1.38647 * 119.48972 * 180.02562 * 13 12 11 15 15 C 1.38350 * 118.67203 * 359.72852 * 14 13 12 16 16 C 1.40595 * 119.13613 * 0.53601 * 15 14 13 17 17 C 1.41333 * 119.78571 * 179.72507 * 16 15 14 18 18 H 1.08002 * 120.00182 * 8.66396 * 17 16 15 19 19 C 1.40031 * 119.99885 * 188.66450 * 17 16 15 20 20 N 1.30746 * 119.99929 * 195.97211 * 19 17 16 21 21 Si 1.86794 * 120.00171 * 15.97642 * 19 17 16 22 22 H 1.48508 * 109.47059 * 269.99943 * 21 19 17 23 23 H 1.48498 * 109.47289 * 29.99550 * 21 19 17 24 24 H 1.48490 * 109.47535 * 149.99946 * 21 19 17 25 25 N 1.31930 * 119.57673 * 198.94275 * 12 11 9 26 26 H 1.07997 * 119.99710 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99549 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00341 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47162 * 5.00165 * 3 2 1 30 30 H 1.09001 * 109.47467 * 244.99920 * 3 2 1 31 31 H 1.08999 * 109.46887 * 60.00066 * 4 3 2 32 32 H 1.08997 * 109.47210 * 299.99918 * 4 3 2 33 33 H 1.09003 * 109.46780 * 59.99680 * 5 4 3 34 34 H 1.09000 * 109.46763 * 300.00449 * 5 4 3 35 35 H 0.96997 * 119.99496 * 359.97438 * 6 5 4 36 36 H 0.96992 * 120.00148 * 5.58997 * 11 9 7 37 37 H 1.07997 * 120.25340 * 0.02562 * 13 12 11 38 38 H 1.07999 * 120.66477 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.43395 * 180.28729 * 15 14 13 40 40 H 0.96999 * 119.99567 * 354.93666 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7996 2.6584 1.1820 6 7 4.7303 2.6850 2.3131 7 6 5.5145 3.7622 2.5153 8 8 5.4500 4.7101 1.7602 9 6 6.4630 3.7895 3.6689 10 8 6.5278 2.8415 4.4237 11 7 7.2476 4.8667 3.8708 12 6 8.2120 4.8466 4.8733 13 6 8.6403 3.6229 5.3938 14 6 9.6010 3.6050 6.3932 15 6 10.1134 4.8089 6.8430 16 6 9.6374 6.0074 6.2830 17 6 10.1470 7.2452 6.7364 18 1 10.9943 7.2678 7.4058 19 6 9.5534 8.4424 6.3178 20 7 10.1888 9.5750 6.4690 21 14 7.8536 8.4212 5.5434 22 1 7.9817 8.2600 4.0727 23 1 7.0705 7.2885 6.0992 24 1 7.1574 9.6983 5.8425 25 7 8.7099 5.9835 5.3207 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9314 31 1 3.7400 0.5066 1.0921 32 1 2.4773 1.2356 2.1130 33 1 3.0944 3.4846 1.2718 34 1 4.3573 2.7563 0.2506 35 1 4.7816 1.9275 2.9168 36 1 7.1398 5.6558 3.3172 37 1 8.2261 2.6980 5.0205 38 1 9.9462 2.6699 6.8088 39 1 10.8662 4.8279 7.6171 40 1 11.0382 9.5958 6.9368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890238625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:09 Heat of formation + Delta-G solvation = -29.744150 kcal Electronic energy + Delta-G solvation = -23289.238889 eV Core-core repulsion = 19683.026641 eV Total energy + Delta-G solvation = -3606.212248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86118 -39.25585 -37.96848 -36.91112 -35.19474 -34.42243 -33.52799 -31.47077 -31.14118 -29.72681 -27.03867 -25.51808 -24.47885 -22.25027 -21.88018 -21.49353 -20.23430 -19.91052 -18.81351 -18.17736 -17.00886 -16.45904 -16.37112 -15.85373 -15.66879 -15.12376 -14.92447 -14.61134 -14.16369 -14.08078 -13.72713 -13.60262 -13.19407 -13.00962 -12.60694 -12.28831 -12.26980 -12.16641 -11.99262 -11.75270 -11.34517 -11.27959 -10.98215 -10.77667 -10.39924 -10.05293 -9.80436 -9.75930 -9.46004 -9.26884 -9.11345 -8.59152 -7.95996 -7.52074 -7.31404 -4.80848 1.27775 1.83675 2.28048 2.49821 2.61421 3.29604 3.49736 3.60647 3.63368 3.90368 4.25802 4.32570 4.43409 4.48838 4.55432 4.71727 4.81547 4.91694 5.13765 5.23060 5.40665 5.47789 5.48078 5.66409 5.74785 5.77465 5.95910 6.00364 6.20323 6.33179 6.34396 6.38839 6.46702 6.86413 7.02451 7.11955 7.38133 7.43146 7.50751 7.67546 7.72282 8.02293 8.11251 8.30290 8.59449 9.36445 9.94305 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.002780 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.593166 B =10067.887052 C =10924.159265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.092 4.092 4 C -0.129 4.129 5 C 0.116 3.884 6 N -0.703 5.703 7 C 0.513 3.487 8 O -0.514 6.514 9 C 0.508 3.492 10 O -0.496 6.496 11 N -0.622 5.622 12 C 0.378 3.622 13 C -0.309 4.309 14 C -0.036 4.036 15 C -0.272 4.272 16 C 0.273 3.727 17 C -0.477 4.477 18 H 0.085 0.915 19 C 0.050 3.950 20 N -0.800 5.800 21 Si 1.139 2.861 22 H -0.284 1.284 23 H -0.280 1.280 24 H -0.324 1.324 25 N -0.590 5.590 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.414 0.586 36 H 0.419 0.581 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.360 -15.266 -10.741 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.357 5.357 7 C 0.293 3.707 8 O -0.389 6.389 9 C 0.289 3.711 10 O -0.370 6.370 11 N -0.268 5.268 12 C 0.147 3.853 13 C -0.334 4.334 14 C -0.061 4.061 15 C -0.294 4.294 16 C 0.149 3.851 17 C -0.509 4.509 18 H 0.103 0.897 19 C -0.173 4.173 20 N -0.421 5.421 21 Si 0.972 3.028 22 H -0.211 1.211 23 H -0.208 1.208 24 H -0.257 1.257 25 N -0.315 5.315 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.257 0.743 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.642 -13.478 -11.773 23.768 hybrid contribution 1.682 -1.694 1.183 2.664 sum -13.961 -15.172 -10.589 23.178 Atomic orbital electron populations 1.23892 0.96010 1.01955 1.01200 1.22934 0.96041 0.98409 0.99848 1.20670 0.98055 0.95832 0.98385 1.21763 0.98400 0.96827 0.99662 1.21517 0.91737 0.98422 0.89001 1.45704 1.39519 1.19596 1.30879 1.20045 0.81731 0.83361 0.85588 1.90790 1.67107 1.34772 1.46255 1.19925 0.81886 0.83565 0.85768 1.90691 1.65974 1.35163 1.45174 1.42920 1.32921 1.17486 1.33499 1.18020 0.88179 0.90856 0.88273 1.21461 1.07793 0.96967 1.07181 1.20905 0.93900 0.96898 0.94354 1.21656 1.07918 0.92935 1.06900 1.18189 0.86589 0.93577 0.86741 1.20687 1.13967 0.90704 1.25563 0.89669 1.27667 1.05826 0.90889 0.92916 1.70617 1.15065 1.29227 1.27182 0.82192 0.71673 0.72013 0.76960 1.21150 1.20754 1.25653 1.66198 1.19471 1.26203 1.19624 0.88516 0.88513 0.87297 0.91006 0.90467 0.90735 0.90766 0.90767 0.90754 0.74973 0.74328 0.84505 0.87442 0.87516 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.07 14.32 29.01 0.42 -0.65 16 2 C -0.15 -0.86 9.52 -36.03 -0.34 -1.21 16 3 C -0.09 -0.49 5.66 -27.88 -0.16 -0.65 16 4 C -0.13 -0.74 5.31 -26.73 -0.14 -0.88 16 5 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 6 N -0.70 -7.33 5.55 -60.75 -0.34 -7.67 16 7 C 0.51 7.34 7.89 -11.62 -0.09 7.25 16 8 O -0.51 -8.42 16.48 5.49 0.09 -8.33 16 9 C 0.51 8.67 7.73 -11.62 -0.09 8.58 16 10 O -0.50 -8.95 13.27 5.49 0.07 -8.88 16 11 N -0.62 -12.21 5.40 -11.83 -0.06 -12.28 16 12 C 0.38 8.72 7.51 -155.09 -1.16 7.55 16 13 C -0.31 -6.80 8.83 -38.88 -0.34 -7.15 16 14 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 15 C -0.27 -6.38 9.83 -38.65 -0.38 -6.76 16 16 C 0.27 7.13 6.27 -85.00 -0.53 6.60 16 17 C -0.48 -12.89 9.51 -37.73 -0.36 -13.25 16 18 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 19 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16 20 N -0.80 -21.60 13.65 55.55 0.76 -20.84 16 21 Si 1.14 27.95 25.93 -169.99 -4.41 23.54 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -7.01 6.55 56.52 0.37 -6.64 16 24 H -0.32 -7.80 7.11 56.52 0.40 -7.40 16 25 N -0.59 -15.06 5.08 -10.28 -0.05 -15.11 16 26 H 0.10 0.50 7.84 -52.49 -0.41 0.09 16 27 H 0.10 0.46 8.06 -52.49 -0.42 0.03 16 28 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 29 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.41 3.75 7.94 -40.82 -0.32 3.43 16 36 H 0.42 7.86 8.30 -40.82 -0.34 7.52 16 37 H 0.14 2.85 5.33 -52.51 -0.28 2.57 16 38 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.28 7.34 8.73 -40.82 -0.36 6.98 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -30.47 346.75 -7.59 -38.06 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.17 Total: 5.85 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -3.71 Total: 0.43 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.31 Total: -55.90 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.16 Total: -17.21 kcal Atomic # 14 Polarization: 27.95 SS G_CDS: -4.41 Total: 23.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.47 -7.59 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890238625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.312 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds