Wall clock time and date at job start Tue Mar 31 2020 08:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 112.96494 * 2 1 4 4 C 1.53946 * 113.76621 * 228.31961 * 2 1 3 5 5 C 1.53938 * 86.29136 * 269.19828 * 4 2 1 6 6 H 1.09004 * 113.76813 * 222.09550 * 5 4 2 7 7 C 1.52998 * 113.77225 * 90.69849 * 5 4 2 8 8 N 1.47574 * 86.11807 * 336.39556 * 5 4 2 9 9 C 1.34779 * 134.49441 * 204.64287 * 8 5 4 10 10 O 1.21359 * 120.00260 * 179.97438 * 9 8 5 11 11 C 1.49372 * 119.99951 * 359.97438 * 9 8 5 12 12 O 1.21359 * 119.99789 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99951 * 180.02562 * 11 9 8 14 14 C 1.39112 * 119.99884 * 183.47542 * 13 11 9 15 15 C 1.39707 * 119.57513 * 339.04122 * 14 13 11 16 16 C 1.38658 * 119.49116 * 179.72741 * 15 14 13 17 17 C 1.38352 * 118.67086 * 0.53298 * 16 15 14 18 18 C 1.40598 * 119.13188 * 359.73406 * 17 16 15 19 19 C 1.41338 * 119.78402 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99916 * 5.42834 * 19 18 17 21 21 C 1.40029 * 119.99832 * 185.42596 * 19 18 17 22 22 N 1.30741 * 120.00415 * 5.45077 * 21 19 18 23 23 Si 1.86806 * 119.99894 * 185.44416 * 21 19 18 24 24 H 1.48501 * 109.47023 * 94.99820 * 23 21 19 25 25 H 1.48499 * 109.47305 * 215.00209 * 23 21 19 26 26 H 1.48504 * 109.46920 * 335.00352 * 23 21 19 27 27 N 1.31933 * 119.57965 * 159.31228 * 14 13 11 28 28 H 1.08996 * 109.47182 * 183.22667 * 1 2 3 29 29 H 1.08997 * 109.47153 * 303.23003 * 1 2 3 30 30 H 1.09001 * 109.46775 * 63.22549 * 1 2 3 31 31 H 1.09008 * 113.74079 * 23.54579 * 4 2 1 32 32 H 1.09001 * 113.73533 * 154.74284 * 4 2 1 33 33 H 1.08998 * 109.47210 * 34.91798 * 7 5 4 34 34 H 1.08999 * 109.47577 * 154.92246 * 7 5 4 35 35 H 1.09003 * 109.47153 * 274.92172 * 7 5 4 36 36 H 0.96998 * 119.99974 * 3.47587 * 13 11 9 37 37 H 1.07998 * 120.26000 * 0.02562 * 15 14 13 38 38 H 1.07998 * 120.66766 * 180.24623 * 16 15 14 39 39 H 1.07990 * 120.43622 * 179.75097 * 17 16 15 40 40 H 0.97000 * 119.99949 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9553 1.0036 0.0000 4 6 2.1505 -0.9369 -1.0523 5 6 2.1300 -2.0177 0.0437 6 1 3.0345 -2.6251 0.0786 7 6 0.8475 -2.8517 0.0635 8 7 2.1271 -0.8992 1.0064 9 6 2.5144 -0.7563 2.2894 10 8 2.3896 0.3154 2.8451 11 6 3.0971 -1.9168 3.0274 12 8 3.2215 -2.9886 2.4718 13 7 3.4839 -1.7740 4.3106 14 6 4.0928 -2.8334 4.9755 15 6 3.9161 -4.1365 4.5038 16 6 4.5284 -5.1905 5.1646 17 6 5.2920 -4.9174 6.2855 18 6 5.4269 -3.5851 6.7138 19 6 6.2042 -3.2904 7.8569 20 1 6.7630 -4.0741 8.3466 21 6 6.2498 -1.9822 8.3542 22 7 5.4920 -1.0558 7.8280 23 14 7.3935 -1.5605 9.7698 24 1 8.6690 -1.0226 9.2323 25 1 6.7522 -0.5398 10.6371 26 1 7.6684 -2.7839 10.5653 27 7 4.8253 -2.5952 6.0466 28 1 -0.3633 -1.0260 0.0578 29 1 -0.3633 0.5631 0.8596 30 1 -0.3633 0.4630 -0.9175 31 1 1.4901 -1.1514 -1.8926 32 1 3.1532 -0.6441 -1.3637 33 1 0.4876 -2.9891 -0.9561 34 1 1.0534 -3.8244 0.5103 35 1 0.0876 -2.3358 0.6505 36 1 3.3377 -0.9325 4.7704 37 1 3.3111 -4.3211 3.6284 38 1 4.4079 -6.2049 4.8141 39 1 5.7783 -5.7171 6.8243 40 1 5.5234 -0.1497 8.1728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890241261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:25 Heat of formation + Delta-G solvation = 23.368469 kcal Electronic energy + Delta-G solvation = -24477.406874 eV Core-core repulsion = 20873.497763 eV Total energy + Delta-G solvation = -3603.909112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06664 -39.72715 -38.08941 -37.44183 -34.43264 -33.28893 -30.95059 -30.60880 -30.46211 -29.37064 -28.17339 -25.82659 -24.63229 -22.38879 -21.98462 -21.63750 -20.28743 -18.87433 -17.83114 -17.57061 -16.81114 -16.24177 -15.89477 -15.33248 -15.07158 -14.79817 -14.48966 -14.06272 -13.99016 -13.50302 -13.32419 -13.06820 -12.96193 -12.87911 -12.47293 -12.27153 -12.06561 -12.00366 -11.61045 -11.54850 -11.40556 -11.26174 -11.03396 -10.70351 -10.50140 -10.33837 -10.10221 -9.92958 -9.24566 -8.94226 -8.83436 -8.10635 -7.74117 -7.22341 -6.46278 -4.53806 1.55708 2.27194 2.74540 2.95267 3.09227 3.12359 3.21283 3.47771 3.63388 3.94179 4.08569 4.55311 4.63518 4.74583 4.79038 4.88078 5.01253 5.05222 5.29324 5.40276 5.42784 5.59553 5.66400 5.77268 5.84284 5.88194 6.00418 6.09326 6.14507 6.33064 6.66878 6.69318 6.75321 7.10828 7.33250 7.38684 7.45507 7.62802 7.80847 7.94221 8.04202 8.24289 8.45490 8.66421 8.90182 9.97738 10.28691 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.003511 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.607131 B = 7973.144328 C = 8859.678635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 H 0.092 0.908 4 C -0.150 4.150 5 C 0.135 3.865 6 H 0.105 0.895 7 C -0.161 4.161 8 N -0.615 5.615 9 C 0.533 3.467 10 O -0.520 6.520 11 C 0.507 3.493 12 O -0.500 6.500 13 N -0.613 5.613 14 C 0.351 3.649 15 C -0.314 4.314 16 C -0.050 4.050 17 C -0.283 4.283 18 C 0.279 3.721 19 C -0.434 4.434 20 H 0.087 0.913 21 C 0.071 3.929 22 N -0.721 5.721 23 Si 0.909 3.091 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 N -0.504 5.504 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.419 0.581 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 1.550 -15.283 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 H 0.110 0.890 4 C -0.188 4.188 5 C 0.032 3.968 6 H 0.123 0.877 7 C -0.219 4.219 8 N -0.352 5.352 9 C 0.317 3.683 10 O -0.395 6.395 11 C 0.288 3.712 12 O -0.375 6.375 13 N -0.259 5.259 14 C 0.117 3.883 15 C -0.338 4.338 16 C -0.075 4.075 17 C -0.306 4.306 18 C 0.153 3.847 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.154 4.154 22 N -0.342 5.342 23 Si 0.733 3.267 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.185 1.185 27 N -0.223 5.223 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.256 0.744 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.153 2.499 -14.837 17.113 hybrid contribution 0.393 -0.113 0.744 0.849 sum -7.761 2.386 -14.093 16.265 Atomic orbital electron populations 1.22310 0.93542 1.04091 1.02875 1.22719 0.94388 0.96145 0.83624 0.88975 1.23761 1.02419 0.96072 0.96526 1.22767 1.00349 0.90104 0.83560 0.87736 1.22240 0.96296 1.00737 1.02586 1.50077 1.60101 1.15565 1.09446 1.19940 0.79072 0.88584 0.80742 1.90767 1.54669 1.27888 1.66181 1.19829 0.80387 0.88462 0.82553 1.90606 1.53058 1.26369 1.67436 1.42884 1.55074 1.17004 1.10896 1.18440 0.93219 0.84516 0.92147 1.21764 1.13096 0.91407 1.07566 1.20828 0.95305 0.97036 0.94291 1.21764 1.09515 0.97541 1.01776 1.18180 0.89314 0.85994 0.91258 1.19585 1.24086 0.94680 1.08247 0.89518 1.26049 0.95377 0.96317 0.97652 1.70064 1.28476 1.02087 1.33599 0.86300 0.80490 0.79197 0.80740 1.19481 1.20143 1.18505 1.67982 1.11994 1.35048 1.07249 0.90359 0.91700 0.90762 0.89290 0.88778 0.90985 0.91082 0.91077 0.74403 0.84587 0.88153 0.88058 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.71 37.16 0.36 -1.00 16 2 C 0.13 1.31 5.01 -66.86 -0.33 0.97 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.15 -1.14 7.50 -25.81 -0.19 -1.34 16 5 C 0.14 1.44 3.92 -66.87 -0.26 1.17 16 6 H 0.10 1.25 7.41 -51.93 -0.38 0.87 16 7 C -0.16 -1.45 8.89 37.16 0.33 -1.12 16 8 N -0.62 -8.29 3.18 -164.28 -0.52 -8.81 16 9 C 0.53 9.28 8.12 -11.62 -0.09 9.18 16 10 O -0.52 -10.13 17.21 5.49 0.09 -10.04 16 11 C 0.51 9.98 7.78 -11.62 -0.09 9.89 16 12 O -0.50 -10.04 11.74 5.49 0.06 -9.97 16 13 N -0.61 -13.52 5.40 -11.83 -0.06 -13.58 16 14 C 0.35 8.90 7.50 -155.09 -1.16 7.73 16 15 C -0.31 -7.57 8.89 -38.88 -0.35 -7.91 16 16 C -0.05 -1.16 10.15 -39.38 -0.40 -1.56 16 17 C -0.28 -7.05 9.83 -38.65 -0.38 -7.43 16 18 C 0.28 7.71 6.53 -85.00 -0.56 7.15 16 19 C -0.43 -11.62 9.13 -37.73 -0.34 -11.97 16 20 H 0.09 2.16 7.85 -52.49 -0.41 1.75 16 21 C 0.07 1.82 5.48 -17.34 -0.10 1.72 16 22 N -0.72 -19.18 11.52 55.55 0.64 -18.54 16 23 Si 0.91 18.67 29.56 -169.99 -5.03 13.64 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 27 N -0.50 -14.04 7.95 -10.28 -0.08 -14.12 16 28 H 0.08 0.60 4.35 -51.93 -0.23 0.38 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.46 7.89 -51.92 -0.41 0.05 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.45 7.90 -51.93 -0.41 0.04 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.68 5.61 -51.93 -0.29 0.38 16 36 H 0.42 9.05 8.30 -40.82 -0.34 8.71 16 37 H 0.14 3.15 5.17 -52.91 -0.27 2.87 16 38 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.27 6.62 8.29 -40.82 -0.34 6.29 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -31.72 335.94 -8.24 -39.96 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -4.84 Total: 10.91 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -3.57 Total: 5.50 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.03 Total: -55.06 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.16 Total: -20.01 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.72 -8.24 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890241261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.324 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds