Wall clock time and date at job start Tue Mar 31 2020 08:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 112.96494 * 2 1 4 4 C 1.53946 * 113.76621 * 228.31961 * 2 1 3 5 5 C 1.53938 * 86.29136 * 269.19828 * 4 2 1 6 6 H 1.09004 * 113.76813 * 222.09550 * 5 4 2 7 7 C 1.52998 * 113.77225 * 90.69849 * 5 4 2 8 8 N 1.47574 * 86.11807 * 336.39556 * 5 4 2 9 9 C 1.34779 * 134.49441 * 204.64287 * 8 5 4 10 10 O 1.21359 * 120.00260 * 179.97438 * 9 8 5 11 11 C 1.49372 * 119.99951 * 359.97438 * 9 8 5 12 12 O 1.21359 * 119.99789 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99951 * 180.02562 * 11 9 8 14 14 C 1.39112 * 119.99884 * 183.47542 * 13 11 9 15 15 C 1.39707 * 119.57513 * 339.04122 * 14 13 11 16 16 C 1.38658 * 119.49116 * 179.72741 * 15 14 13 17 17 C 1.38352 * 118.67086 * 0.53298 * 16 15 14 18 18 C 1.40598 * 119.13188 * 359.73406 * 17 16 15 19 19 C 1.41338 * 119.78402 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99916 * 5.42834 * 19 18 17 21 21 C 1.40029 * 119.99832 * 185.42596 * 19 18 17 22 22 N 1.30741 * 120.00415 * 5.45077 * 21 19 18 23 23 Si 1.86806 * 119.99894 * 185.44416 * 21 19 18 24 24 H 1.48501 * 109.47023 * 94.99820 * 23 21 19 25 25 H 1.48499 * 109.47305 * 215.00209 * 23 21 19 26 26 H 1.48504 * 109.46920 * 335.00352 * 23 21 19 27 27 N 1.31933 * 119.57965 * 159.31228 * 14 13 11 28 28 H 1.08996 * 109.47182 * 183.22667 * 1 2 3 29 29 H 1.08997 * 109.47153 * 303.23003 * 1 2 3 30 30 H 1.09001 * 109.46775 * 63.22549 * 1 2 3 31 31 H 1.09008 * 113.74079 * 23.54579 * 4 2 1 32 32 H 1.09001 * 113.73533 * 154.74284 * 4 2 1 33 33 H 1.08998 * 109.47210 * 34.91798 * 7 5 4 34 34 H 1.08999 * 109.47577 * 154.92246 * 7 5 4 35 35 H 1.09003 * 109.47153 * 274.92172 * 7 5 4 36 36 H 0.96998 * 119.99974 * 3.47587 * 13 11 9 37 37 H 1.07998 * 120.26000 * 0.02562 * 15 14 13 38 38 H 1.07998 * 120.66766 * 180.24623 * 16 15 14 39 39 H 1.07990 * 120.43622 * 179.75097 * 17 16 15 40 40 H 0.97000 * 119.99949 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9553 1.0036 0.0000 4 6 2.1505 -0.9369 -1.0523 5 6 2.1300 -2.0177 0.0437 6 1 3.0345 -2.6251 0.0786 7 6 0.8475 -2.8517 0.0635 8 7 2.1271 -0.8992 1.0064 9 6 2.5144 -0.7563 2.2894 10 8 2.3896 0.3154 2.8451 11 6 3.0971 -1.9168 3.0274 12 8 3.2215 -2.9886 2.4718 13 7 3.4839 -1.7740 4.3106 14 6 4.0928 -2.8334 4.9755 15 6 3.9161 -4.1365 4.5038 16 6 4.5284 -5.1905 5.1646 17 6 5.2920 -4.9174 6.2855 18 6 5.4269 -3.5851 6.7138 19 6 6.2042 -3.2904 7.8569 20 1 6.7630 -4.0741 8.3466 21 6 6.2498 -1.9822 8.3542 22 7 5.4920 -1.0558 7.8280 23 14 7.3935 -1.5605 9.7698 24 1 8.6690 -1.0226 9.2323 25 1 6.7522 -0.5398 10.6371 26 1 7.6684 -2.7839 10.5653 27 7 4.8253 -2.5952 6.0466 28 1 -0.3633 -1.0260 0.0578 29 1 -0.3633 0.5631 0.8596 30 1 -0.3633 0.4630 -0.9175 31 1 1.4901 -1.1514 -1.8926 32 1 3.1532 -0.6441 -1.3637 33 1 0.4876 -2.9891 -0.9561 34 1 1.0534 -3.8244 0.5103 35 1 0.0876 -2.3358 0.6505 36 1 3.3377 -0.9325 4.7704 37 1 3.3111 -4.3211 3.6284 38 1 4.4079 -6.2049 4.8141 39 1 5.7783 -5.7171 6.8243 40 1 5.5234 -0.1497 8.1728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890241261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:24 Heat of formation + Delta-G solvation = 2.859977 kcal Electronic energy + Delta-G solvation = -24478.296189 eV Core-core repulsion = 20873.497763 eV Total energy + Delta-G solvation = -3604.798427 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30904 -41.15572 -39.69158 -39.00152 -36.20847 -35.16508 -32.42316 -31.97315 -31.40292 -31.24413 -28.93623 -27.67886 -26.15470 -23.63351 -23.41004 -23.17101 -21.82011 -20.27356 -19.41636 -18.90886 -18.25532 -17.92260 -17.20871 -16.85927 -16.49973 -16.30353 -16.19308 -15.58364 -15.23846 -14.96926 -14.69154 -14.23178 -14.10682 -13.96492 -13.88315 -13.72093 -13.30424 -13.14499 -12.95133 -12.84066 -12.71361 -12.65611 -12.29534 -12.15102 -11.99632 -11.82667 -11.71097 -11.13367 -11.09057 -10.42281 -10.06145 -9.99119 -9.70839 -9.14421 -8.36708 -6.55160 0.02570 0.85264 1.03393 1.13874 1.40740 1.52869 1.55902 2.01748 2.21543 2.22582 2.82234 3.08097 3.34606 3.83919 3.85093 4.05499 4.11495 4.22159 4.24897 4.28450 4.48974 4.52453 4.69692 4.80563 4.83577 4.85730 4.86357 4.98693 5.01797 5.04348 5.08646 5.18971 5.32930 5.45420 5.50374 5.53941 5.83497 5.90273 6.16885 6.24060 6.30289 6.54545 6.71089 6.81405 6.93929 8.02052 8.40987 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.003511 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.607131 B = 7973.144328 C = 8859.678635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.122 3.878 6 H 0.087 0.913 7 C -0.156 4.156 8 N -0.613 5.613 9 C 0.531 3.469 10 O -0.552 6.552 11 C 0.507 3.493 12 O -0.504 6.504 13 N -0.621 5.621 14 C 0.337 3.663 15 C -0.320 4.320 16 C -0.046 4.046 17 C -0.298 4.298 18 C 0.244 3.756 19 C -0.465 4.465 20 H 0.096 0.904 21 C 0.025 3.975 22 N -0.759 5.759 23 Si 0.991 3.009 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.251 1.251 27 N -0.537 5.537 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.417 0.583 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 1.232 -17.158 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.108 0.892 4 C -0.162 4.162 5 C 0.020 3.980 6 H 0.105 0.895 7 C -0.213 4.213 8 N -0.348 5.348 9 C 0.314 3.686 10 O -0.431 6.431 11 C 0.289 3.711 12 O -0.379 6.379 13 N -0.266 5.266 14 C 0.103 3.897 15 C -0.345 4.345 16 C -0.070 4.070 17 C -0.320 4.320 18 C 0.118 3.882 19 C -0.496 4.496 20 H 0.114 0.886 21 C -0.197 4.197 22 N -0.381 5.381 23 Si 0.811 3.189 24 H -0.191 1.191 25 H -0.194 1.194 26 H -0.174 1.174 27 N -0.256 5.256 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.254 0.746 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.690 2.148 -16.798 19.035 hybrid contribution 0.474 -0.069 1.140 1.237 sum -8.216 2.078 -15.658 17.804 Atomic orbital electron populations 1.22310 0.91731 1.04506 1.03741 1.23159 0.95805 0.96102 0.82586 0.89219 1.23713 1.03482 0.92864 0.96128 1.23123 1.00675 0.90441 0.83785 0.89460 1.22231 0.95122 0.99236 1.04725 1.50508 1.58133 1.18096 1.08068 1.19490 0.79828 0.87210 0.82097 1.90744 1.56631 1.28391 1.67305 1.20399 0.79559 0.89377 0.81797 1.90564 1.53079 1.26958 1.67324 1.42953 1.55543 1.16328 1.11814 1.18815 0.93034 0.85924 0.91974 1.22020 1.13292 0.91283 1.07914 1.21238 0.93818 0.98653 0.93281 1.21980 1.10281 0.97083 1.02690 1.18717 0.90038 0.87296 0.92132 1.19993 1.24856 0.95992 1.08779 0.88554 1.27022 0.96719 0.95629 1.00312 1.70171 1.29965 1.02662 1.35263 0.85074 0.77797 0.79183 0.76894 1.19119 1.19369 1.17429 1.67973 1.13278 1.35900 1.08457 0.89816 0.93608 0.87454 0.85217 0.88254 0.87228 0.92785 0.91531 0.74645 0.83655 0.84311 0.86307 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.71 71.98 0.70 -1.48 16 2 C 0.12 2.16 5.01 45.10 0.23 2.38 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.45 7.50 31.25 0.23 -1.21 16 5 C 0.12 2.36 3.92 45.09 0.18 2.54 16 6 H 0.09 2.02 7.41 -2.38 -0.02 2.00 16 7 C -0.16 -2.43 8.89 71.98 0.64 -1.79 16 8 N -0.61 -16.07 3.18 -792.01 -2.52 -18.59 16 9 C 0.53 18.93 8.12 87.24 0.71 19.64 16 10 O -0.55 -22.33 17.21 -3.28 -0.06 -22.38 16 11 C 0.51 20.58 7.78 87.24 0.68 21.26 16 12 O -0.50 -20.56 11.74 -3.28 -0.04 -20.60 16 13 N -0.62 -28.69 5.40 -309.70 -1.67 -30.36 16 14 C 0.34 17.68 7.50 133.30 1.00 18.68 16 15 C -0.32 -15.62 8.89 22.73 0.20 -15.42 16 16 C -0.05 -2.10 10.15 22.40 0.23 -1.87 16 17 C -0.30 -14.95 9.83 22.87 0.22 -14.73 16 18 C 0.24 13.92 6.53 40.20 0.26 14.18 16 19 C -0.46 -25.43 9.13 23.47 0.21 -25.22 16 20 H 0.10 4.86 7.85 -2.91 -0.02 4.84 16 21 C 0.02 1.29 5.48 85.29 0.47 1.75 16 22 N -0.76 -41.68 11.52 21.84 0.25 -41.43 16 23 Si 0.99 38.58 29.56 68.60 2.03 40.60 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 25 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 26 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 27 N -0.54 -31.10 7.95 -186.43 -1.48 -32.58 16 28 H 0.08 1.03 4.35 -2.39 -0.01 1.02 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.13 0.58 7.89 -2.38 -0.02 0.56 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 0.89 7.90 -2.39 -0.02 0.87 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.13 5.61 -2.39 -0.01 1.11 16 36 H 0.42 19.23 8.30 -92.71 -0.77 18.46 16 37 H 0.15 6.74 5.17 -9.57 -0.05 6.69 16 38 H 0.14 5.20 8.06 -2.91 -0.02 5.17 16 39 H 0.12 5.37 8.06 -2.92 -0.02 5.35 16 40 H 0.28 13.94 8.29 -92.71 -0.77 13.17 16 Total: -1.00 -72.26 335.94 2.76 -69.51 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.29 Total: 37.11 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 5.96 Total: 18.72 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -5.42 Total: -122.96 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.09 Total: -42.98 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.60 kcal Total: -72.26 2.76 -69.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890241261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.366 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds