Wall clock time and date at job start Tue Mar 31 2020 08:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.08999 * 115.54685 * 29.42168 * 3 2 1 5 5 C 1.53004 * 117.50202 * 243.74542 * 3 2 1 6 6 C 1.53000 * 117.49769 * 175.08603 * 3 2 1 7 7 H 1.08998 * 117.49925 * 0.02562 * 6 3 2 8 8 N 1.46504 * 117.49788 * 214.98126 * 6 3 2 9 9 C 1.34780 * 119.99618 * 155.00621 * 8 6 3 10 10 O 1.21360 * 120.00327 * 359.97438 * 9 8 6 11 11 C 1.49367 * 119.99532 * 180.02562 * 9 8 6 12 12 O 1.21357 * 120.00252 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99955 * 179.97438 * 11 9 8 14 14 C 1.39112 * 120.00124 * 174.85100 * 13 11 9 15 15 C 1.39710 * 119.58007 * 185.38988 * 14 13 11 16 16 C 1.38647 * 119.49228 * 179.79449 * 15 14 13 17 17 C 1.38348 * 118.67513 * 0.47292 * 16 15 14 18 18 C 1.40598 * 119.12998 * 359.75512 * 17 16 15 19 19 C 1.41340 * 119.77922 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.40038 * 119.99645 * 180.02562 * 19 18 17 22 22 N 1.30743 * 119.99617 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99920 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47209 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47156 * 119.99927 * 23 21 19 26 26 H 1.48499 * 109.47437 * 240.00121 * 23 21 19 27 27 N 1.31936 * 119.57907 * 5.66501 * 14 13 11 28 28 H 1.09001 * 109.47073 * 60.00055 * 1 2 3 29 29 H 1.09000 * 109.46744 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46711 * 299.99627 * 1 2 3 31 31 H 1.09005 * 109.47563 * 120.00506 * 2 1 3 32 32 H 1.09004 * 109.47206 * 240.00367 * 2 1 3 33 33 H 1.08999 * 117.49575 * 0.02562 * 5 3 2 34 34 H 1.08991 * 117.49916 * 145.01839 * 5 3 2 35 35 H 0.96999 * 119.99991 * 334.99831 * 8 6 3 36 36 H 0.96998 * 119.99885 * 354.85638 * 13 11 9 37 37 H 1.08003 * 120.24908 * 0.02562 * 15 14 13 38 38 H 1.08006 * 120.66117 * 180.22791 * 16 15 14 39 39 H 1.07992 * 120.43457 * 179.76922 * 17 16 15 40 40 H 0.97003 * 119.99220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1712 0.4831 5 6 2.8415 1.9085 -1.2171 6 6 3.5503 1.6578 0.1163 7 1 4.1806 0.7718 0.1923 8 7 4.0109 2.8280 0.8678 9 6 5.2333 2.8259 1.4354 10 8 5.9523 1.8545 1.3243 11 6 5.7027 4.0187 2.2022 12 8 4.9835 4.9899 2.3137 13 7 6.9249 4.0165 2.7702 14 6 7.4050 5.1645 3.3921 15 6 8.7145 5.1893 3.8782 16 6 9.1925 6.3359 4.4940 17 6 8.3477 7.4245 4.6173 18 6 7.0387 7.3358 4.1120 19 6 6.1639 8.4395 4.2311 20 1 6.5018 9.3473 4.7086 21 6 4.8590 8.3559 3.7298 22 7 4.4502 7.2570 3.1512 23 14 3.7026 9.8143 3.8879 24 1 4.4023 10.9286 4.5762 25 1 3.2773 10.2576 2.5359 26 1 2.5089 9.4164 4.6765 27 7 6.6160 6.2142 3.5203 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.0051 1.1875 -2.0181 34 1 2.7181 2.9439 -1.5346 35 1 3.4361 3.6043 0.9568 36 1 7.4698 3.2145 2.7453 37 1 9.3508 4.3231 3.7718 38 1 10.2029 6.3770 4.8733 39 1 8.6893 8.3306 5.0953 40 1 3.5464 7.1993 2.8037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890257233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:14 Heat of formation + Delta-G solvation = 8.118016 kcal Electronic energy + Delta-G solvation = -23996.125072 eV Core-core repulsion = 20391.554651 eV Total energy + Delta-G solvation = -3604.570421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28705 -38.91221 -37.85899 -37.11149 -34.51587 -33.63712 -33.01357 -31.42738 -30.39358 -29.22651 -25.88113 -24.93642 -24.04019 -22.30181 -21.46672 -20.96871 -20.77492 -19.53844 -18.29909 -17.18862 -16.80012 -16.04677 -15.41218 -15.28783 -14.77904 -14.68657 -14.56516 -14.47665 -13.76994 -13.64914 -13.42963 -12.94241 -12.84788 -12.78096 -12.33806 -12.06313 -12.01509 -11.52840 -11.33115 -11.24794 -11.20297 -11.05316 -10.99436 -10.68641 -10.53816 -10.24761 -9.96893 -9.82339 -9.11403 -9.02708 -8.80496 -8.04804 -7.34997 -7.07382 -6.23551 -4.46385 1.85384 2.67761 2.79521 3.06208 3.13294 3.16821 3.21742 3.59469 3.97977 3.98980 4.01019 4.47933 4.58276 4.73708 4.85262 4.92038 4.95045 5.09101 5.23027 5.46074 5.57659 5.69425 5.75430 5.83505 5.87553 5.95626 6.05495 6.08606 6.37082 6.43176 6.56424 6.73940 6.78594 7.14111 7.25262 7.47960 7.51469 7.75169 7.88007 8.02734 8.15172 8.35669 8.61165 8.91603 9.00110 10.13105 10.39909 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003948 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.605561 B = 7091.084002 C = 8818.931251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.158 4.158 4 H 0.109 0.891 5 C -0.187 4.187 6 C 0.082 3.918 7 H 0.139 0.861 8 N -0.678 5.678 9 C 0.514 3.486 10 O -0.532 6.532 11 C 0.468 3.532 12 O -0.387 6.387 13 N -0.638 5.638 14 C 0.368 3.632 15 C -0.348 4.348 16 C -0.036 4.036 17 C -0.300 4.300 18 C 0.271 3.729 19 C -0.423 4.423 20 H 0.084 0.916 21 C 0.059 3.941 22 N -0.663 5.663 23 Si 0.898 3.102 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.275 1.275 27 N -0.475 5.475 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.415 0.585 36 H 0.412 0.588 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 -10.747 -6.710 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.177 4.177 4 H 0.128 0.872 5 C -0.225 4.225 6 C -0.024 4.024 7 H 0.156 0.844 8 N -0.330 5.330 9 C 0.296 3.704 10 O -0.409 6.409 11 C 0.244 3.756 12 O -0.249 6.249 13 N -0.286 5.286 14 C 0.130 3.870 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.323 4.323 18 C 0.146 3.854 19 C -0.454 4.454 20 H 0.102 0.898 21 C -0.169 4.169 22 N -0.282 5.282 23 Si 0.722 3.278 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.194 5.194 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.579 -10.819 -7.159 15.025 hybrid contribution 0.381 0.573 0.327 0.762 sum -7.198 -10.246 -6.832 14.264 Atomic orbital electron populations 1.21745 0.95321 1.01586 1.02029 1.21114 0.96075 0.93604 1.02263 1.22940 0.93658 0.98862 1.02262 0.87247 1.23648 1.03768 1.03090 0.92044 1.21770 0.94058 0.91218 0.95357 0.84379 1.45130 1.16974 1.18502 1.52353 1.20836 0.81731 0.88416 0.79456 1.90686 1.54692 1.35569 1.59936 1.20065 0.84222 0.88198 0.83138 1.91213 1.51059 1.30832 1.51812 1.42980 1.17076 1.14093 1.54493 1.18544 0.89254 0.87398 0.91817 1.20517 0.96319 1.00908 1.19649 1.20587 0.97210 0.92760 0.95466 1.21654 0.97124 0.99385 1.14158 1.18377 0.89441 0.90171 0.87457 1.19630 0.95490 0.98592 1.31691 0.89779 1.26171 0.99103 0.96675 0.94970 1.70321 1.16013 1.23041 1.18831 0.86424 0.80418 0.82228 0.78694 1.18549 1.20036 1.20032 1.68637 1.31811 0.98463 1.20480 0.92598 0.92695 0.92571 0.91355 0.91610 0.87916 0.88265 0.74801 0.75279 0.88692 0.88339 0.88354 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.87 37.16 0.37 -0.68 16 2 C -0.09 -0.73 6.22 -26.73 -0.17 -0.89 16 3 C -0.16 -1.45 5.66 -90.62 -0.51 -1.96 16 4 H 0.11 1.01 8.08 -51.93 -0.42 0.60 16 5 C -0.19 -1.73 10.11 -26.69 -0.27 -2.00 16 6 C 0.08 0.94 6.16 -67.89 -0.42 0.53 16 7 H 0.14 1.67 7.40 -51.93 -0.38 1.29 16 8 N -0.68 -9.58 5.56 -54.22 -0.30 -9.88 16 9 C 0.51 8.87 7.89 -11.62 -0.09 8.78 16 10 O -0.53 -9.71 16.05 5.49 0.09 -9.62 16 11 C 0.47 9.65 7.84 -11.62 -0.09 9.56 16 12 O -0.39 -9.16 12.24 5.49 0.07 -9.10 16 13 N -0.64 -13.29 5.37 -11.83 -0.06 -13.35 16 14 C 0.37 9.00 7.42 -155.09 -1.15 7.85 16 15 C -0.35 -7.84 9.96 -38.88 -0.39 -8.23 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.42 9.83 -38.65 -0.38 -7.80 16 18 C 0.27 7.46 6.55 -85.00 -0.56 6.91 16 19 C -0.42 -11.36 9.14 -37.73 -0.34 -11.70 16 20 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 21 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 22 N -0.66 -17.58 8.99 55.55 0.50 -17.08 16 23 Si 0.90 18.65 29.56 -169.99 -5.02 13.63 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 N -0.47 -13.09 5.73 -10.28 -0.06 -13.15 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 33 H 0.10 0.81 8.03 -51.93 -0.42 0.40 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.42 5.67 8.30 -40.82 -0.34 5.33 16 36 H 0.41 7.34 8.18 -40.82 -0.33 7.00 16 37 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -31.06 345.99 -9.31 -40.37 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.23 Total: 12.39 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -4.50 Total: 0.57 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.08 Total: -53.46 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.06 -9.31 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890257233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.490 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds