Wall clock time and date at job start Tue Mar 31 2020 08:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.08999 * 115.54685 * 29.42168 * 3 2 1 5 5 C 1.53004 * 117.50202 * 243.74542 * 3 2 1 6 6 C 1.53000 * 117.49769 * 175.08603 * 3 2 1 7 7 H 1.08998 * 117.49925 * 0.02562 * 6 3 2 8 8 N 1.46504 * 117.49788 * 214.98126 * 6 3 2 9 9 C 1.34780 * 119.99618 * 155.00621 * 8 6 3 10 10 O 1.21360 * 120.00327 * 359.97438 * 9 8 6 11 11 C 1.49367 * 119.99532 * 180.02562 * 9 8 6 12 12 O 1.21357 * 120.00252 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99955 * 179.97438 * 11 9 8 14 14 C 1.39112 * 120.00124 * 174.85100 * 13 11 9 15 15 C 1.39710 * 119.58007 * 185.38988 * 14 13 11 16 16 C 1.38647 * 119.49228 * 179.79449 * 15 14 13 17 17 C 1.38348 * 118.67513 * 0.47292 * 16 15 14 18 18 C 1.40598 * 119.12998 * 359.75512 * 17 16 15 19 19 C 1.41340 * 119.77922 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.40038 * 119.99645 * 180.02562 * 19 18 17 22 22 N 1.30743 * 119.99617 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99920 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47209 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47156 * 119.99927 * 23 21 19 26 26 H 1.48499 * 109.47437 * 240.00121 * 23 21 19 27 27 N 1.31936 * 119.57907 * 5.66501 * 14 13 11 28 28 H 1.09001 * 109.47073 * 60.00055 * 1 2 3 29 29 H 1.09000 * 109.46744 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46711 * 299.99627 * 1 2 3 31 31 H 1.09005 * 109.47563 * 120.00506 * 2 1 3 32 32 H 1.09004 * 109.47206 * 240.00367 * 2 1 3 33 33 H 1.08999 * 117.49575 * 0.02562 * 5 3 2 34 34 H 1.08991 * 117.49916 * 145.01839 * 5 3 2 35 35 H 0.96999 * 119.99991 * 334.99831 * 8 6 3 36 36 H 0.96998 * 119.99885 * 354.85638 * 13 11 9 37 37 H 1.08003 * 120.24908 * 0.02562 * 15 14 13 38 38 H 1.08006 * 120.66117 * 180.22791 * 16 15 14 39 39 H 1.07992 * 120.43457 * 179.76922 * 17 16 15 40 40 H 0.97003 * 119.99220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1712 0.4831 5 6 2.8415 1.9085 -1.2171 6 6 3.5503 1.6578 0.1163 7 1 4.1806 0.7718 0.1923 8 7 4.0109 2.8280 0.8678 9 6 5.2333 2.8259 1.4354 10 8 5.9523 1.8545 1.3243 11 6 5.7027 4.0187 2.2022 12 8 4.9835 4.9899 2.3137 13 7 6.9249 4.0165 2.7702 14 6 7.4050 5.1645 3.3921 15 6 8.7145 5.1893 3.8782 16 6 9.1925 6.3359 4.4940 17 6 8.3477 7.4245 4.6173 18 6 7.0387 7.3358 4.1120 19 6 6.1639 8.4395 4.2311 20 1 6.5018 9.3473 4.7086 21 6 4.8590 8.3559 3.7298 22 7 4.4502 7.2570 3.1512 23 14 3.7026 9.8143 3.8879 24 1 4.4023 10.9286 4.5762 25 1 3.2773 10.2576 2.5359 26 1 2.5089 9.4164 4.6765 27 7 6.6160 6.2142 3.5203 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.0051 1.1875 -2.0181 34 1 2.7181 2.9439 -1.5346 35 1 3.4361 3.6043 0.9568 36 1 7.4698 3.2145 2.7453 37 1 9.3508 4.3231 3.7718 38 1 10.2029 6.3770 4.8733 39 1 8.6893 8.3306 5.0953 40 1 3.5464 7.1993 2.8037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890257233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:14 Heat of formation + Delta-G solvation = -11.141053 kcal Electronic energy + Delta-G solvation = -23996.960208 eV Core-core repulsion = 20391.554651 eV Total energy + Delta-G solvation = -3605.405557 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75754 -40.42225 -39.20564 -38.55580 -36.20070 -35.09180 -34.51060 -32.29656 -32.22819 -31.08178 -27.70503 -26.44441 -24.72734 -23.80678 -23.17079 -22.25786 -21.70029 -20.96798 -19.95412 -18.85979 -18.24752 -17.58778 -16.79031 -16.68430 -16.45948 -16.29384 -15.63551 -15.42334 -15.37837 -15.14629 -14.98698 -14.66246 -13.93866 -13.78582 -13.67562 -13.54612 -12.97841 -12.90589 -12.74833 -12.59774 -12.55971 -12.31849 -12.18735 -12.15762 -11.95090 -11.74388 -11.62237 -11.02011 -10.93199 -10.62415 -9.94525 -9.84782 -9.21309 -8.93134 -8.09625 -6.43240 0.32828 1.00725 1.25959 1.32591 1.42610 1.53514 1.56398 2.27235 2.30875 2.60236 2.85678 2.97799 3.44020 3.64993 3.80759 3.97144 4.00834 4.25871 4.32273 4.47563 4.53389 4.66421 4.74982 4.81263 4.81629 4.93349 4.93902 4.98257 5.15952 5.20213 5.24854 5.25949 5.30913 5.48272 5.62722 5.70278 5.89131 5.97630 6.14482 6.28446 6.53009 6.70071 6.82644 7.03200 7.26913 8.24231 8.54823 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003948 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.605561 B = 7091.084002 C = 8818.931251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.143 4.143 4 H 0.109 0.891 5 C -0.171 4.171 6 C 0.053 3.947 7 H 0.133 0.867 8 N -0.664 5.664 9 C 0.523 3.477 10 O -0.544 6.544 11 C 0.461 3.539 12 O -0.420 6.420 13 N -0.632 5.632 14 C 0.346 3.654 15 C -0.342 4.342 16 C -0.033 4.033 17 C -0.321 4.321 18 C 0.236 3.764 19 C -0.460 4.460 20 H 0.088 0.912 21 C 0.014 3.986 22 N -0.695 5.695 23 Si 0.977 3.023 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.270 1.270 27 N -0.506 5.506 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.417 0.583 36 H 0.425 0.575 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 -11.586 -7.431 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.162 4.162 4 H 0.127 0.873 5 C -0.209 4.209 6 C -0.052 4.052 7 H 0.151 0.849 8 N -0.314 5.314 9 C 0.304 3.696 10 O -0.422 6.422 11 C 0.239 3.761 12 O -0.285 6.285 13 N -0.282 5.282 14 C 0.108 3.892 15 C -0.367 4.367 16 C -0.057 4.057 17 C -0.344 4.344 18 C 0.110 3.890 19 C -0.491 4.491 20 H 0.106 0.894 21 C -0.211 4.211 22 N -0.315 5.315 23 Si 0.798 3.202 24 H -0.180 1.180 25 H -0.195 1.195 26 H -0.195 1.195 27 N -0.226 5.226 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.254 0.746 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.127 0.873 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.984 -11.705 -7.898 16.222 hybrid contribution 0.584 0.709 0.528 1.059 sum -7.401 -10.996 -7.370 15.166 Atomic orbital electron populations 1.21736 0.94585 1.02245 1.01996 1.21151 0.96656 0.92512 1.02704 1.23007 0.91718 0.99874 1.01596 0.87284 1.23732 1.01818 1.03725 0.91642 1.22001 0.95689 0.90096 0.97374 0.84911 1.45117 1.15634 1.19376 1.51299 1.20096 0.82747 0.87021 0.79774 1.90680 1.55296 1.35424 1.60829 1.20692 0.83775 0.88914 0.82703 1.91208 1.51873 1.32439 1.52957 1.42971 1.17512 1.13678 1.54025 1.19005 0.90172 0.87787 0.92208 1.20966 0.95863 1.02078 1.17815 1.21049 0.98663 0.91716 0.94282 1.21853 0.96797 1.00879 1.14872 1.18878 0.90979 0.90777 0.88337 1.19947 0.96787 0.98987 1.33387 0.89439 1.27000 1.00250 0.99624 0.94251 1.70470 1.16453 1.25009 1.19553 0.85237 0.77837 0.78390 0.78728 1.17987 1.19489 1.19495 1.68592 1.33288 0.99293 1.21426 0.92203 0.91739 0.93051 0.91711 0.90437 0.86006 0.88204 0.74585 0.73716 0.85219 0.84246 0.87319 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.87 71.98 0.71 -1.07 16 2 C -0.09 -1.26 6.22 30.59 0.19 -1.07 16 3 C -0.14 -2.37 5.66 -10.79 -0.06 -2.43 16 4 H 0.11 1.86 8.08 -2.39 -0.02 1.84 16 5 C -0.17 -2.81 10.11 30.62 0.31 -2.50 16 6 C 0.05 1.16 6.16 45.02 0.28 1.44 16 7 H 0.13 3.09 7.40 -2.39 -0.02 3.07 16 8 N -0.66 -18.60 5.56 -443.82 -2.47 -21.07 16 9 C 0.52 18.10 7.89 87.24 0.69 18.78 16 10 O -0.54 -19.63 16.05 -3.28 -0.05 -19.68 16 11 C 0.46 19.44 7.84 87.24 0.68 20.13 16 12 O -0.42 -20.62 12.24 -3.27 -0.04 -20.66 16 13 N -0.63 -26.47 5.37 -309.70 -1.66 -28.13 16 14 C 0.35 17.05 7.42 133.30 0.99 18.04 16 15 C -0.34 -14.89 9.96 22.72 0.23 -14.66 16 16 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 17 C -0.32 -15.95 9.83 22.87 0.22 -15.73 16 18 C 0.24 13.37 6.55 40.20 0.26 13.63 16 19 C -0.46 -25.49 9.14 23.47 0.21 -25.28 16 20 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 21 C 0.01 0.74 5.50 85.29 0.47 1.20 16 22 N -0.70 -38.09 8.99 21.84 0.20 -37.90 16 23 Si 0.98 39.08 29.56 68.60 2.03 41.11 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 25 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 N -0.51 -28.70 5.73 -186.43 -1.07 -29.76 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.08 0.89 7.88 -2.38 -0.02 0.87 16 33 H 0.12 1.57 8.03 -2.39 -0.02 1.55 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.42 11.46 8.30 -92.71 -0.77 10.69 16 36 H 0.42 14.92 8.18 -92.71 -0.76 14.16 16 37 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 39 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 40 H 0.27 13.79 8.29 -92.71 -0.77 13.02 16 Total: -1.00 -68.75 345.99 1.91 -66.85 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.44 Total: 39.96 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.41 Total: 9.29 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -5.00 Total: -116.86 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.09 Total: -40.34 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -68.75 1.91 -66.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890257233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.707 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds