Wall clock time and date at job start Tue Mar 31 2020 08:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.41647 * 2 1 4 4 C 1.52976 * 109.41089 * 240.14706 * 2 1 3 5 5 C 1.50578 * 110.08679 * 196.29201 * 4 2 1 6 6 O 1.21286 * 119.75930 * 255.52562 * 5 4 2 7 7 N 1.35080 * 120.47763 * 75.54869 * 5 4 2 8 8 C 1.39611 * 120.56994 * 355.55590 * 7 5 4 9 9 C 1.38740 * 120.71819 * 131.88859 * 8 7 5 10 10 C 1.37855 * 120.03192 * 178.40252 * 9 8 7 11 11 C 1.39717 * 120.09139 * 359.66209 * 10 9 8 12 12 C 1.47607 * 120.02172 * 180.45487 * 11 10 9 13 13 O 1.21586 * 120.00153 * 179.97438 * 12 11 10 14 14 N 1.34779 * 119.99925 * 0.02562 * 12 11 10 15 15 C 1.46497 * 120.00169 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47324 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00249 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00059 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99783 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46908 * 90.00721 * 20 18 16 22 22 H 1.48498 * 109.46881 * 210.00634 * 20 18 16 23 23 H 1.48498 * 109.47331 * 330.00631 * 20 18 16 24 24 C 1.39788 * 119.95968 * 0.48111 * 11 10 9 25 25 C 1.38132 * 119.72574 * 0.14446 * 24 11 10 26 26 N 1.40141 * 120.52702 * 178.15713 * 25 24 11 27 27 H 1.09000 * 109.47253 * 179.85818 * 1 2 3 28 28 H 1.09009 * 109.46780 * 299.84961 * 1 2 3 29 29 H 1.08995 * 109.47354 * 59.84728 * 1 2 3 30 30 H 1.09001 * 109.36735 * 76.10177 * 4 2 1 31 31 H 1.09001 * 109.26601 * 316.41835 * 4 2 1 32 32 H 0.96999 * 119.71541 * 175.53728 * 7 5 4 33 33 H 1.08003 * 119.98820 * 358.42630 * 9 8 7 34 34 H 1.08000 * 119.94952 * 179.38378 * 10 9 8 35 35 H 0.96996 * 119.99927 * 359.97438 * 14 12 11 36 36 H 1.08999 * 109.47089 * 299.99653 * 15 14 12 37 37 H 1.09000 * 109.47424 * 59.99182 * 15 14 12 38 38 H 0.96996 * 120.00228 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.13438 * 180.15545 * 24 11 10 40 40 H 0.97001 * 120.61054 * 72.85381 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 6 2.0384 -0.7182 -1.2514 5 6 3.4905 -1.0805 -1.0857 6 8 4.3411 -0.4378 -1.6639 7 7 3.8526 -2.1165 -0.2981 8 6 2.8970 -2.8098 0.4471 9 6 2.8582 -4.1966 0.4349 10 6 1.9297 -4.8676 1.2017 11 6 1.0308 -4.1532 1.9978 12 6 0.0438 -4.8736 2.8259 13 8 -0.7380 -4.2515 3.5189 14 7 0.0099 -6.2209 2.8147 15 6 -0.9699 -6.9358 3.6362 16 6 -0.7989 -8.4207 3.4438 17 1 -0.0368 -8.7944 2.7760 18 6 -1.6161 -9.3021 4.1195 19 7 -1.4665 -10.5979 3.9519 20 14 -2.9347 -8.6556 5.2739 21 1 -4.1970 -8.4516 4.5187 22 1 -3.1632 -9.6379 6.3639 23 1 -2.4922 -7.3635 5.8568 24 6 1.0663 -2.7559 2.0091 25 6 1.9901 -2.0879 1.2290 26 7 2.0153 -0.6870 1.1980 27 1 -0.3634 -1.0277 -0.0025 28 1 -0.3633 0.5115 0.8914 29 1 -0.3634 0.5162 -0.8886 30 1 1.9255 -0.0630 -2.1151 31 1 1.4549 -1.6256 -1.4073 32 1 4.7845 -2.3812 -0.2500 33 1 3.5561 -4.7508 -0.1752 34 1 1.8942 -5.9469 1.1836 35 1 0.6339 -6.7171 2.2622 36 1 -0.8162 -6.6851 4.6857 37 1 -1.9767 -6.6446 3.3368 38 1 -2.0411 -11.2180 4.4275 39 1 0.3744 -2.2009 2.6253 40 1 2.3485 -0.1821 1.9562 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907804321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:52 Heat of formation + Delta-G solvation = -37.365628 kcal Electronic energy + Delta-G solvation = -24130.564219 eV Core-core repulsion = 20524.021480 eV Total energy + Delta-G solvation = -3606.542740 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22053 -39.53148 -38.27797 -36.67292 -35.07362 -34.45658 -32.59395 -32.14026 -30.33526 -28.88394 -28.34871 -27.51839 -24.12704 -23.13856 -21.96529 -21.33409 -20.66978 -19.89230 -18.34358 -17.84202 -17.39004 -16.83851 -16.39459 -16.09871 -15.45364 -15.07309 -14.72072 -14.62805 -14.40829 -14.24756 -13.87572 -13.45934 -13.31945 -13.14124 -12.84839 -12.62785 -12.39868 -12.34564 -12.22681 -12.02451 -11.68497 -11.24378 -11.06845 -10.81768 -10.51917 -10.18954 -10.01484 -9.56096 -9.47921 -9.28777 -8.83375 -8.77265 -8.28611 -8.09646 -6.25471 -4.28311 0.64266 1.13700 2.19904 2.84341 2.99005 3.23568 3.25893 3.31198 3.38833 3.86598 3.91681 4.14340 4.29887 4.42176 4.61130 4.66395 4.96146 5.02283 5.04900 5.09945 5.09978 5.21225 5.31907 5.35000 5.44773 5.60232 5.69184 5.93495 5.99634 6.03956 6.23043 6.37861 6.49954 6.75776 6.86103 7.01126 7.11983 7.15158 7.32344 7.62475 7.77790 8.06258 8.42581 8.68618 8.81489 9.34081 10.86368 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.003039 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.389455 B = 9210.144482 C = 9867.226740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.175 3.825 3 H 0.087 0.913 4 C -0.157 4.157 5 C 0.536 3.464 6 O -0.539 6.539 7 N -0.667 5.667 8 C 0.134 3.866 9 C -0.130 4.130 10 C -0.074 4.074 11 C -0.118 4.118 12 C 0.541 3.459 13 O -0.553 6.553 14 N -0.697 5.697 15 C 0.220 3.780 16 C -0.546 4.546 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.057 4.057 25 C 0.143 3.857 26 N -0.785 5.785 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.408 0.592 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.396 0.604 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.142 0.858 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.431 18.809 -9.224 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.069 3.931 3 H 0.105 0.895 4 C -0.198 4.198 5 C 0.325 3.675 6 O -0.415 6.415 7 N -0.314 5.314 8 C 0.037 3.963 9 C -0.151 4.151 10 C -0.094 4.094 11 C -0.122 4.122 12 C 0.327 3.673 13 O -0.434 6.434 14 N -0.345 5.345 15 C 0.098 3.902 16 C -0.583 4.583 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 C -0.078 4.078 25 C 0.047 3.953 26 N -0.432 5.432 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.246 0.754 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.231 0.769 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.160 0.840 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.001 19.425 -9.178 22.926 hybrid contribution 0.058 -0.287 0.640 0.704 sum 8.060 19.138 -8.538 22.453 Atomic orbital electron populations 1.22331 0.95177 1.02981 1.02305 1.20611 0.93953 0.95532 0.83038 0.89500 1.22252 0.92569 1.03765 1.01216 1.20654 0.91601 0.78498 0.76764 1.90756 1.53275 1.50258 1.47189 1.43460 1.10342 1.32842 1.44804 1.18237 0.91884 0.91040 0.95120 1.20846 1.00851 0.91961 1.01439 1.21288 0.93411 1.00464 0.94213 1.20166 0.98268 0.93923 0.99889 1.18184 0.83843 0.82967 0.82326 1.90739 1.41960 1.67584 1.43068 1.46148 1.37169 1.05080 1.46104 1.19546 0.87718 0.92217 0.90753 1.21069 1.20329 0.87987 1.28946 0.90210 1.24789 0.97003 0.94630 0.96135 1.69873 1.39202 1.01467 1.42291 0.86821 0.82339 0.79500 0.81062 1.19807 1.20881 1.18454 1.21468 0.95677 0.92873 0.97805 1.17323 0.95917 0.84765 0.97263 1.44052 1.78377 1.01252 1.19479 0.91960 0.91691 0.91868 0.87365 0.88876 0.75352 0.84785 0.84495 0.76880 0.95437 0.95900 0.92203 0.84035 0.76024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.30 37.16 0.35 -0.86 16 2 C 0.17 1.29 3.55 -68.01 -0.24 1.05 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.16 -1.28 4.82 -27.95 -0.13 -1.41 16 5 C 0.54 5.64 7.01 -10.91 -0.08 5.56 16 6 O -0.54 -7.47 17.92 5.55 0.10 -7.37 16 7 N -0.67 -6.09 5.23 -9.71 -0.05 -6.14 16 8 C 0.13 1.29 5.58 -83.54 -0.47 0.82 16 9 C -0.13 -1.21 9.96 -39.54 -0.39 -1.60 16 10 C -0.07 -0.82 9.53 -39.17 -0.37 -1.20 16 11 C -0.12 -1.63 5.88 -104.94 -0.62 -2.25 16 12 C 0.54 10.00 7.76 -12.44 -0.10 9.91 16 13 O -0.55 -12.15 16.34 5.29 0.09 -12.07 16 14 N -0.70 -13.54 5.50 -62.51 -0.34 -13.88 16 15 C 0.22 5.23 4.50 -5.20 -0.02 5.20 16 16 C -0.55 -14.51 9.83 -34.44 -0.34 -14.85 16 17 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 20 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 24 C -0.06 -0.70 9.52 -39.04 -0.37 -1.07 16 25 C 0.14 1.47 5.43 -83.50 -0.45 1.01 16 26 N -0.79 -6.62 4.84 -52.09 -0.25 -6.87 16 27 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.09 0.76 7.50 -51.93 -0.39 0.37 16 32 H 0.41 3.23 8.91 -40.82 -0.36 2.87 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.14 1.37 6.38 -52.49 -0.33 1.04 16 35 H 0.40 6.64 6.33 -40.82 -0.26 6.38 16 36 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 37 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.14 1.86 7.65 -52.49 -0.40 1.46 16 40 H 0.40 3.01 8.96 -40.82 -0.37 2.65 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -33.09 335.47 -7.63 -40.72 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.99 Total: 7.04 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -3.34 Total: 2.38 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.13 Total: -52.04 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.19 Total: -19.43 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.09 -7.63 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907804321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.355 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds