Wall clock time and date at job start Tue Mar 31 2020 08:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.41647 * 2 1 4 4 C 1.52976 * 109.41089 * 240.14706 * 2 1 3 5 5 C 1.50578 * 110.08679 * 196.29201 * 4 2 1 6 6 O 1.21286 * 119.75930 * 255.52562 * 5 4 2 7 7 N 1.35080 * 120.47763 * 75.54869 * 5 4 2 8 8 C 1.39611 * 120.56994 * 355.55590 * 7 5 4 9 9 C 1.38740 * 120.71819 * 131.88859 * 8 7 5 10 10 C 1.37855 * 120.03192 * 178.40252 * 9 8 7 11 11 C 1.39717 * 120.09139 * 359.66209 * 10 9 8 12 12 C 1.47607 * 120.02172 * 180.45487 * 11 10 9 13 13 O 1.21586 * 120.00153 * 179.97438 * 12 11 10 14 14 N 1.34779 * 119.99925 * 0.02562 * 12 11 10 15 15 C 1.46497 * 120.00169 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47324 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00249 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00059 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99783 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46908 * 90.00721 * 20 18 16 22 22 H 1.48498 * 109.46881 * 210.00634 * 20 18 16 23 23 H 1.48498 * 109.47331 * 330.00631 * 20 18 16 24 24 C 1.39788 * 119.95968 * 0.48111 * 11 10 9 25 25 C 1.38132 * 119.72574 * 0.14446 * 24 11 10 26 26 N 1.40141 * 120.52702 * 178.15713 * 25 24 11 27 27 H 1.09000 * 109.47253 * 179.85818 * 1 2 3 28 28 H 1.09009 * 109.46780 * 299.84961 * 1 2 3 29 29 H 1.08995 * 109.47354 * 59.84728 * 1 2 3 30 30 H 1.09001 * 109.36735 * 76.10177 * 4 2 1 31 31 H 1.09001 * 109.26601 * 316.41835 * 4 2 1 32 32 H 0.96999 * 119.71541 * 175.53728 * 7 5 4 33 33 H 1.08003 * 119.98820 * 358.42630 * 9 8 7 34 34 H 1.08000 * 119.94952 * 179.38378 * 10 9 8 35 35 H 0.96996 * 119.99927 * 359.97438 * 14 12 11 36 36 H 1.08999 * 109.47089 * 299.99653 * 15 14 12 37 37 H 1.09000 * 109.47424 * 59.99182 * 15 14 12 38 38 H 0.96996 * 120.00228 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.13438 * 180.15545 * 24 11 10 40 40 H 0.97001 * 120.61054 * 72.85381 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 6 2.0384 -0.7182 -1.2514 5 6 3.4905 -1.0805 -1.0857 6 8 4.3411 -0.4378 -1.6639 7 7 3.8526 -2.1165 -0.2981 8 6 2.8970 -2.8098 0.4471 9 6 2.8582 -4.1966 0.4349 10 6 1.9297 -4.8676 1.2017 11 6 1.0308 -4.1532 1.9978 12 6 0.0438 -4.8736 2.8259 13 8 -0.7380 -4.2515 3.5189 14 7 0.0099 -6.2209 2.8147 15 6 -0.9699 -6.9358 3.6362 16 6 -0.7989 -8.4207 3.4438 17 1 -0.0368 -8.7944 2.7760 18 6 -1.6161 -9.3021 4.1195 19 7 -1.4665 -10.5979 3.9519 20 14 -2.9347 -8.6556 5.2739 21 1 -4.1970 -8.4516 4.5187 22 1 -3.1632 -9.6379 6.3639 23 1 -2.4922 -7.3635 5.8568 24 6 1.0663 -2.7559 2.0091 25 6 1.9901 -2.0879 1.2290 26 7 2.0153 -0.6870 1.1980 27 1 -0.3634 -1.0277 -0.0025 28 1 -0.3633 0.5115 0.8914 29 1 -0.3634 0.5162 -0.8886 30 1 1.9255 -0.0630 -2.1151 31 1 1.4549 -1.6256 -1.4073 32 1 4.7845 -2.3812 -0.2500 33 1 3.5561 -4.7508 -0.1752 34 1 1.8942 -5.9469 1.1836 35 1 0.6339 -6.7171 2.2622 36 1 -0.8162 -6.6851 4.6857 37 1 -1.9767 -6.6446 3.3368 38 1 -2.0411 -11.2180 4.4275 39 1 0.3744 -2.2009 2.6253 40 1 2.3485 -0.1821 1.9562 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907804321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:52 Heat of formation + Delta-G solvation = -62.450017 kcal Electronic energy + Delta-G solvation = -24131.651960 eV Core-core repulsion = 20524.021480 eV Total energy + Delta-G solvation = -3607.630480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.06511 -40.79911 -39.38271 -37.43287 -36.23449 -35.97953 -34.44515 -33.06472 -31.36354 -30.19348 -29.05774 -28.80276 -25.35041 -24.17807 -23.35752 -22.41419 -21.43584 -21.16052 -19.52873 -18.92149 -18.29215 -18.15058 -17.52972 -17.29114 -16.54208 -16.40167 -16.20846 -15.82529 -15.55099 -15.37762 -14.85553 -14.70431 -14.35492 -14.26124 -14.17693 -13.93393 -13.61485 -13.32433 -13.07277 -13.01758 -12.76463 -12.68604 -12.54555 -11.92560 -11.89368 -11.64212 -11.42395 -11.05540 -11.00455 -10.90648 -10.12790 -10.01196 -9.58828 -8.93250 -8.38585 -6.45556 -0.33667 0.28519 1.33719 1.34943 1.37081 1.49121 1.85583 2.06818 2.28970 2.33371 2.62296 2.79708 2.97438 3.38552 3.78977 3.80982 3.85928 4.01033 4.13459 4.31900 4.34528 4.47707 4.52683 4.66549 4.79022 4.81340 4.95063 5.02523 5.03243 5.12319 5.15085 5.25043 5.32372 5.38897 5.44335 5.53664 5.73919 6.06552 6.09765 6.41526 6.54904 6.79852 6.95909 6.99207 7.15680 7.34296 8.75925 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.003039 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.389455 B = 9210.144482 C = 9867.226740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.103 0.897 4 C -0.155 4.155 5 C 0.536 3.464 6 O -0.573 6.573 7 N -0.659 5.659 8 C 0.144 3.856 9 C -0.117 4.117 10 C -0.068 4.068 11 C -0.137 4.137 12 C 0.542 3.458 13 O -0.594 6.594 14 N -0.697 5.697 15 C 0.231 3.769 16 C -0.546 4.546 17 H 0.062 0.938 18 C 0.028 3.972 19 N -0.930 5.930 20 Si 0.935 3.065 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.059 4.059 25 C 0.150 3.850 26 N -0.785 5.785 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.416 0.584 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.409 0.591 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.141 20.200 -10.130 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.070 3.930 3 H 0.121 0.879 4 C -0.196 4.196 5 C 0.326 3.674 6 O -0.452 6.452 7 N -0.306 5.306 8 C 0.047 3.953 9 C -0.137 4.137 10 C -0.088 4.088 11 C -0.141 4.141 12 C 0.331 3.669 13 O -0.477 6.477 14 N -0.347 5.347 15 C 0.107 3.893 16 C -0.584 4.584 17 H 0.080 0.920 18 C -0.173 4.173 19 N -0.569 5.569 20 Si 0.759 3.241 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.081 4.081 25 C 0.053 3.947 26 N -0.432 5.432 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.112 0.888 32 H 0.255 0.745 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.246 0.754 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.739 20.818 -10.099 24.733 hybrid contribution -0.063 -0.667 0.841 1.075 sum 8.676 20.151 -9.258 23.813 Atomic orbital electron populations 1.22284 0.94923 1.02006 1.03099 1.20718 0.94029 0.96065 0.82179 0.87907 1.22304 0.90897 1.04263 1.02133 1.21023 0.92179 0.78061 0.76108 1.90749 1.54391 1.51407 1.48628 1.43412 1.10688 1.32353 1.44126 1.18290 0.91338 0.91294 0.94346 1.21066 1.00293 0.91770 1.00566 1.21371 0.92883 1.00959 0.93566 1.19796 0.98811 0.94238 1.01300 1.18822 0.83897 0.82308 0.81863 1.90705 1.43840 1.68196 1.44917 1.45951 1.36900 1.05693 1.46125 1.19150 0.88449 0.90906 0.90781 1.21275 1.19541 0.89469 1.28119 0.91959 1.25570 0.99173 0.94789 0.97738 1.69971 1.40573 1.02651 1.43709 0.85890 0.79907 0.78955 0.79360 1.18991 1.19962 1.18374 1.21367 0.96108 0.92290 0.98371 1.17257 0.95226 0.85639 0.96546 1.44147 1.78289 1.00565 1.20170 0.93750 0.91846 0.90180 0.85933 0.88764 0.74457 0.81776 0.83475 0.75391 0.96708 0.96792 0.91854 0.85407 0.75390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.30 71.98 0.67 -1.38 16 2 C 0.18 2.19 3.55 45.01 0.16 2.35 16 3 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.16 -2.14 4.82 29.80 0.14 -2.00 16 5 C 0.54 10.02 7.01 87.57 0.61 10.63 16 6 O -0.57 -14.84 17.92 -3.05 -0.05 -14.89 16 7 N -0.66 -10.21 5.23 -302.86 -1.58 -11.79 16 8 C 0.14 2.38 5.58 38.41 0.21 2.60 16 9 C -0.12 -1.79 9.96 22.30 0.22 -1.56 16 10 C -0.07 -1.37 9.53 22.54 0.21 -1.16 16 11 C -0.14 -3.70 5.88 -20.07 -0.12 -3.81 16 12 C 0.54 20.17 7.76 86.72 0.67 20.85 16 13 O -0.59 -26.60 16.34 -3.99 -0.07 -26.66 16 14 N -0.70 -27.17 5.50 -469.94 -2.58 -29.76 16 15 C 0.23 11.07 4.50 85.63 0.38 11.46 16 16 C -0.55 -29.39 9.83 25.60 0.25 -29.13 16 17 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 18 C 0.03 1.54 5.47 84.66 0.46 2.00 16 19 N -0.93 -54.60 13.96 21.45 0.30 -54.30 16 20 Si 0.94 43.25 27.47 68.60 1.88 45.13 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 24 C -0.06 -1.43 9.52 22.62 0.22 -1.21 16 25 C 0.15 2.79 5.43 38.17 0.21 3.00 16 26 N -0.78 -11.72 4.84 -318.71 -1.54 -13.27 16 27 H 0.04 0.72 8.06 -2.39 -0.02 0.70 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.12 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.09 1.31 7.50 -2.39 -0.02 1.29 16 32 H 0.42 5.39 8.91 -92.71 -0.83 4.57 16 33 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.15 2.64 6.38 -2.91 -0.02 2.62 16 35 H 0.41 13.59 6.33 -92.71 -0.59 13.01 16 36 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 37 H 0.01 0.70 7.57 -2.39 -0.02 0.69 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.13 3.41 7.65 -2.91 -0.02 3.39 16 40 H 0.41 5.35 8.96 -92.71 -0.83 4.52 16 Total: -1.00 -71.75 335.47 -0.52 -72.27 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -1.19 Total: 20.64 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 4.32 Total: 12.63 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -5.41 Total: -109.12 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.12 Total: -41.55 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Total: -71.75 -0.52 -72.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907804321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.818 kcal (2) G-P(sol) polarization free energy of solvation -71.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds