Wall clock time and date at job start Tue Mar 31 2020 07:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47405 * 2 1 4 4 C 1.50710 * 109.46945 * 240.01002 * 2 1 3 5 5 H 1.08000 * 119.99349 * 241.20073 * 4 2 1 6 6 C 1.37873 * 120.00109 * 61.19343 * 4 2 1 7 7 N 1.31513 * 120.00056 * 194.19050 * 6 4 2 8 8 Si 1.86803 * 120.00220 * 14.18526 * 6 4 2 9 9 H 1.48503 * 109.46721 * 84.54037 * 8 6 4 10 10 H 1.48497 * 109.47365 * 204.53748 * 8 6 4 11 11 H 1.48496 * 109.47092 * 324.54163 * 8 6 4 12 12 C 1.52996 * 109.47646 * 120.00790 * 2 1 3 13 13 N 1.46505 * 109.46978 * 299.99730 * 12 2 1 14 14 C 1.33785 * 124.17494 * 90.01947 * 13 12 2 15 15 O 1.21542 * 123.77711 * 359.96903 * 14 13 12 16 16 N 1.34534 * 112.45703 * 179.69512 * 14 13 12 17 17 C 1.47314 * 106.61576 * 0.27027 * 16 14 13 18 18 H 1.08998 * 110.59549 * 118.68511 * 17 16 14 19 19 C 1.50702 * 110.59711 * 241.47180 * 17 16 14 20 20 C 1.38232 * 119.61460 * 243.27583 * 19 17 16 21 21 C 1.38627 * 119.15457 * 179.75586 * 20 19 17 22 22 C 1.38674 * 118.42230 * 0.51029 * 21 20 19 23 23 C 1.38179 * 119.16621 * 359.72894 * 22 21 20 24 24 N 1.31848 * 119.61811 * 63.55143 * 19 17 16 25 25 C 1.34770 * 124.17804 * 270.20433 * 13 12 2 26 26 O 1.21237 * 127.15679 * 359.97438 * 25 13 12 27 27 H 1.09000 * 109.46395 * 309.48098 * 1 2 3 28 28 H 1.08994 * 109.47248 * 69.47679 * 1 2 3 29 29 H 1.08994 * 109.47081 * 189.48392 * 1 2 3 30 30 H 1.08999 * 109.47304 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47374 * 300.01305 * 3 2 1 32 32 H 1.09003 * 109.46406 * 60.00594 * 3 2 1 33 33 H 0.97001 * 120.00219 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47171 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47298 * 59.99447 * 12 2 1 36 36 H 0.96996 * 126.69188 * 180.29076 * 16 14 13 37 37 H 1.07994 * 120.42016 * 359.97438 * 20 19 17 38 38 H 1.08005 * 120.78676 * 180.26090 * 21 20 19 39 39 H 1.08004 * 120.41924 * 179.75523 * 22 21 20 40 40 H 1.08000 * 119.62295 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.6371 -1.5995 -1.1318 6 6 1.7196 -0.2248 -2.4827 7 7 1.9094 -0.9759 -3.5454 8 14 1.0263 1.4997 -2.6695 9 1 2.1415 2.4793 -2.7137 10 1 0.2429 1.5846 -3.9281 11 1 0.1437 1.8061 -1.5153 12 6 2.0401 -0.7214 1.2491 13 7 1.5519 -0.0309 2.4454 14 6 0.3979 -0.3160 3.0593 15 8 -0.3700 -1.1813 2.6866 16 7 0.1850 0.4583 4.1387 17 6 1.3405 1.3665 4.2401 18 1 1.0207 2.4049 4.1538 19 6 2.0759 1.1460 5.5369 20 6 2.1431 2.1670 6.4663 21 6 2.8177 1.9521 7.6581 22 6 3.4112 0.7164 7.8670 23 6 3.3065 -0.2548 6.8897 24 7 2.6524 -0.0168 5.7695 25 6 2.2080 0.9723 3.0613 26 8 3.2734 1.4550 2.7423 27 1 -0.3632 0.6534 0.7932 28 1 -0.3633 0.3603 -0.9624 29 1 -0.3633 -1.0136 0.1693 30 1 3.1301 1.4425 -0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6898 -0.6343 -4.4263 34 1 3.1301 -0.7217 1.2488 35 1 1.6767 -1.7490 1.2490 36 1 -0.5799 0.4248 4.7342 37 1 1.6730 3.1188 6.2678 38 1 2.8829 2.7301 8.4045 39 1 3.9482 0.5154 8.7823 40 1 3.7656 -1.2200 7.0449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924925226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:23 Heat of formation + Delta-G solvation = 19.663776 kcal Electronic energy + Delta-G solvation = -25527.382060 eV Core-core repulsion = 21923.312301 eV Total energy + Delta-G solvation = -3604.069759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32135 -40.32509 -38.23607 -36.71548 -35.84132 -33.77314 -32.81002 -31.89116 -31.39749 -27.66637 -26.55975 -26.22793 -24.82627 -23.94605 -23.29645 -22.02321 -20.84159 -18.83294 -17.73368 -17.67871 -17.00193 -16.55093 -16.17638 -15.93683 -15.41583 -15.36006 -15.01101 -14.83888 -14.08065 -13.92548 -13.85218 -13.55116 -13.35114 -13.08451 -12.76446 -12.71869 -12.21794 -12.07327 -11.84457 -10.96625 -10.94371 -10.80290 -10.28050 -10.20362 -10.10799 -10.03044 -9.85967 -9.73959 -9.49567 -9.38866 -9.26824 -9.03095 -8.47633 -8.36243 -6.08454 -4.04975 0.61176 0.90380 1.87677 2.57782 3.21644 3.32678 3.37083 3.40977 3.45111 3.46018 3.67595 4.27261 4.31123 4.43887 4.48950 4.65489 4.72621 4.89053 5.07442 5.23548 5.31155 5.45464 5.66154 5.76232 5.89377 5.97966 6.03702 6.19336 6.26181 6.48132 6.52724 6.66407 6.74958 6.80039 6.86755 7.09674 7.27386 7.41738 7.58389 7.60438 7.67859 7.81186 8.43036 8.50254 8.94672 9.56384 11.04479 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.004206 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.634895 B = 6655.145305 C = 6823.272575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.025 3.975 3 C -0.141 4.141 4 C -0.511 4.511 5 H 0.077 0.923 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.250 1.250 12 C 0.140 3.860 13 N -0.560 5.560 14 C 0.708 3.292 15 O -0.532 6.532 16 N -0.724 5.724 17 C 0.141 3.859 18 H 0.136 0.864 19 C 0.122 3.878 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.166 4.166 23 C 0.106 3.894 24 N -0.463 5.463 25 C 0.538 3.462 26 O -0.462 6.462 27 H 0.014 0.986 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.435 0.565 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 7.659 24.740 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.023 3.977 3 C -0.197 4.197 4 C -0.548 4.548 5 H 0.095 0.905 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.021 3.979 13 N -0.304 5.304 14 C 0.410 3.590 15 O -0.405 6.405 16 N -0.389 5.389 17 C 0.031 3.969 18 H 0.153 0.847 19 C -0.018 4.018 20 C -0.170 4.170 21 C -0.101 4.101 22 C -0.186 4.186 23 C -0.052 4.052 24 N -0.172 5.172 25 C 0.324 3.676 26 O -0.331 6.331 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.279 0.721 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.194 6.685 23.380 24.318 hybrid contribution -0.536 1.721 0.781 1.965 sum -0.730 8.406 24.162 25.593 Atomic orbital electron populations 1.22232 0.97251 1.00394 0.99220 1.18863 0.93020 0.92373 0.93411 1.22327 1.01261 0.98100 0.98052 1.20650 1.33971 1.12315 0.87908 0.90476 1.24915 0.94549 0.97221 0.95757 1.69948 1.48322 1.35821 0.98719 0.87316 0.79399 0.85750 0.75919 1.21321 1.23396 1.17596 1.22023 0.99471 0.96294 0.80102 1.46466 1.20433 1.34557 1.28950 1.15812 0.81711 0.81561 0.79964 1.91006 1.48048 1.33153 1.68270 1.45419 1.23395 1.39011 1.31118 1.20848 0.86678 0.97477 0.91905 0.84674 1.20678 0.96274 0.90374 0.94443 1.21932 1.00597 1.00078 0.94361 1.21596 0.94616 0.97192 0.96647 1.22244 1.00712 0.94548 1.01050 1.22811 0.94494 0.99523 0.88347 1.67421 1.06917 1.21404 1.21491 1.20190 0.85290 0.79382 0.82783 1.90791 1.19141 1.55390 1.67815 0.96694 0.92989 0.92604 0.92471 0.94244 0.96029 0.92602 0.89375 0.88984 0.72117 0.84153 0.84342 0.84430 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 6.51 37.16 0.24 -2.88 16 2 C 0.02 0.59 0.57 -155.65 -0.09 0.50 16 3 C -0.14 -3.22 6.69 37.16 0.25 -2.97 16 4 C -0.51 -14.22 8.62 -34.44 -0.30 -14.52 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 6 C 0.08 2.26 5.32 -17.82 -0.09 2.16 16 7 N -0.89 -27.30 13.96 55.43 0.77 -26.53 16 8 Si 0.88 22.34 22.79 -169.99 -3.87 18.47 16 9 H -0.29 -7.17 7.10 56.52 0.40 -6.77 16 10 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 11 H -0.25 -5.95 4.65 56.52 0.26 -5.69 16 12 C 0.14 2.95 4.66 -4.04 -0.02 2.93 16 13 N -0.56 -10.28 2.16 -120.73 -0.26 -10.54 16 14 C 0.71 12.31 7.23 -88.02 -0.64 11.68 16 15 O -0.53 -10.91 16.09 5.33 0.09 -10.83 16 16 N -0.72 -9.03 6.23 -60.33 -0.38 -9.40 16 17 C 0.14 1.69 4.00 -69.36 -0.28 1.41 16 18 H 0.14 1.15 7.94 -51.93 -0.41 0.74 16 19 C 0.12 1.34 5.91 -82.59 -0.49 0.85 16 20 C -0.15 -1.16 9.73 -39.44 -0.38 -1.55 16 21 C -0.07 -0.48 10.18 -39.28 -0.40 -0.88 16 22 C -0.17 -1.13 10.11 -39.44 -0.40 -1.53 16 23 C 0.11 0.99 11.18 -17.55 -0.20 0.79 16 24 N -0.46 -5.82 9.97 -9.47 -0.09 -5.91 16 25 C 0.54 9.02 5.73 -10.56 -0.06 8.96 16 26 O -0.46 -8.82 16.85 5.59 0.09 -8.72 16 27 H 0.01 0.31 6.97 -51.93 -0.36 -0.05 16 28 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 29 H 0.05 1.33 7.56 -51.93 -0.39 0.94 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.04 0.94 2.26 -51.93 -0.12 0.82 16 32 H 0.02 0.44 6.18 -51.93 -0.32 0.12 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.09 1.84 8.01 -51.93 -0.42 1.42 16 35 H 0.09 1.97 7.86 -51.93 -0.41 1.56 16 36 H 0.44 4.10 8.96 -40.82 -0.37 3.74 16 37 H 0.14 0.70 7.98 -52.49 -0.42 0.28 16 38 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -35.45 319.96 -6.50 -41.95 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.82 Total: 1.74 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.85 Total: 4.96 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.04 Total: -52.38 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.55 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -3.87 Total: 18.47 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.45 -6.50 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924925226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.610 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds