Wall clock time and date at job start Tue Mar 31 2020 07:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47405 * 2 1 4 4 C 1.50710 * 109.46945 * 240.01002 * 2 1 3 5 5 H 1.08000 * 119.99349 * 241.20073 * 4 2 1 6 6 C 1.37873 * 120.00109 * 61.19343 * 4 2 1 7 7 N 1.31513 * 120.00056 * 194.19050 * 6 4 2 8 8 Si 1.86803 * 120.00220 * 14.18526 * 6 4 2 9 9 H 1.48503 * 109.46721 * 84.54037 * 8 6 4 10 10 H 1.48497 * 109.47365 * 204.53748 * 8 6 4 11 11 H 1.48496 * 109.47092 * 324.54163 * 8 6 4 12 12 C 1.52996 * 109.47646 * 120.00790 * 2 1 3 13 13 N 1.46505 * 109.46978 * 299.99730 * 12 2 1 14 14 C 1.33785 * 124.17494 * 90.01947 * 13 12 2 15 15 O 1.21542 * 123.77711 * 359.96903 * 14 13 12 16 16 N 1.34534 * 112.45703 * 179.69512 * 14 13 12 17 17 C 1.47314 * 106.61576 * 0.27027 * 16 14 13 18 18 H 1.08998 * 110.59549 * 118.68511 * 17 16 14 19 19 C 1.50702 * 110.59711 * 241.47180 * 17 16 14 20 20 C 1.38232 * 119.61460 * 243.27583 * 19 17 16 21 21 C 1.38627 * 119.15457 * 179.75586 * 20 19 17 22 22 C 1.38674 * 118.42230 * 0.51029 * 21 20 19 23 23 C 1.38179 * 119.16621 * 359.72894 * 22 21 20 24 24 N 1.31848 * 119.61811 * 63.55143 * 19 17 16 25 25 C 1.34770 * 124.17804 * 270.20433 * 13 12 2 26 26 O 1.21237 * 127.15679 * 359.97438 * 25 13 12 27 27 H 1.09000 * 109.46395 * 309.48098 * 1 2 3 28 28 H 1.08994 * 109.47248 * 69.47679 * 1 2 3 29 29 H 1.08994 * 109.47081 * 189.48392 * 1 2 3 30 30 H 1.08999 * 109.47304 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47374 * 300.01305 * 3 2 1 32 32 H 1.09003 * 109.46406 * 60.00594 * 3 2 1 33 33 H 0.97001 * 120.00219 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47171 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47298 * 59.99447 * 12 2 1 36 36 H 0.96996 * 126.69188 * 180.29076 * 16 14 13 37 37 H 1.07994 * 120.42016 * 359.97438 * 20 19 17 38 38 H 1.08005 * 120.78676 * 180.26090 * 21 20 19 39 39 H 1.08004 * 120.41924 * 179.75523 * 22 21 20 40 40 H 1.08000 * 119.62295 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.6371 -1.5995 -1.1318 6 6 1.7196 -0.2248 -2.4827 7 7 1.9094 -0.9759 -3.5454 8 14 1.0263 1.4997 -2.6695 9 1 2.1415 2.4793 -2.7137 10 1 0.2429 1.5846 -3.9281 11 1 0.1437 1.8061 -1.5153 12 6 2.0401 -0.7214 1.2491 13 7 1.5519 -0.0309 2.4454 14 6 0.3979 -0.3160 3.0593 15 8 -0.3700 -1.1813 2.6866 16 7 0.1850 0.4583 4.1387 17 6 1.3405 1.3665 4.2401 18 1 1.0207 2.4049 4.1538 19 6 2.0759 1.1460 5.5369 20 6 2.1431 2.1670 6.4663 21 6 2.8177 1.9521 7.6581 22 6 3.4112 0.7164 7.8670 23 6 3.3065 -0.2548 6.8897 24 7 2.6524 -0.0168 5.7695 25 6 2.2080 0.9723 3.0613 26 8 3.2734 1.4550 2.7423 27 1 -0.3632 0.6534 0.7932 28 1 -0.3633 0.3603 -0.9624 29 1 -0.3633 -1.0136 0.1693 30 1 3.1301 1.4425 -0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6898 -0.6343 -4.4263 34 1 3.1301 -0.7217 1.2488 35 1 1.6767 -1.7490 1.2490 36 1 -0.5799 0.4248 4.7342 37 1 1.6730 3.1188 6.2678 38 1 2.8829 2.7301 8.4045 39 1 3.9482 0.5154 8.7823 40 1 3.7656 -1.2200 7.0449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924925226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:22 Heat of formation + Delta-G solvation = -7.918383 kcal Electronic energy + Delta-G solvation = -25528.578112 eV Core-core repulsion = 21923.312301 eV Total energy + Delta-G solvation = -3605.265811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.57873 -41.03013 -39.60822 -38.42634 -37.20110 -35.28002 -33.65513 -33.39824 -32.51431 -28.85260 -28.13162 -27.93036 -26.98337 -24.60993 -24.27102 -23.14944 -22.20310 -20.53192 -18.99000 -18.65777 -18.23225 -18.02374 -17.53979 -16.96827 -16.78956 -16.52763 -16.35396 -16.19488 -15.29319 -15.07468 -14.88027 -14.83791 -14.70390 -14.68004 -14.31353 -14.01057 -13.92926 -13.75560 -12.80578 -12.76616 -12.70021 -12.52737 -12.03101 -12.01451 -11.74245 -11.32364 -11.14305 -11.01651 -10.85489 -10.70832 -10.61668 -10.34688 -10.22422 -10.05011 -8.33050 -6.33405 -0.01452 0.35411 0.60960 1.31752 1.32538 1.33695 1.44881 2.04039 2.15102 2.31370 2.67334 2.92547 3.02383 3.26045 3.66851 3.89423 4.03874 4.05283 4.14507 4.20098 4.26879 4.28257 4.44517 4.48484 4.60094 4.67285 4.70698 4.81511 4.82608 4.87323 4.93888 5.15868 5.19620 5.25740 5.35391 5.63414 5.70959 5.73848 5.83386 6.13694 6.25620 6.40016 6.68778 6.97482 7.15250 7.30952 8.83584 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.004206 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.634895 B = 6655.145305 C = 6823.272575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.023 3.977 3 C -0.133 4.133 4 C -0.514 4.514 5 H 0.040 0.960 6 C 0.025 3.975 7 N -0.939 5.939 8 Si 0.938 3.062 9 H -0.279 1.279 10 H -0.308 1.308 11 H -0.222 1.222 12 C 0.151 3.849 13 N -0.569 5.569 14 C 0.704 3.296 15 O -0.572 6.572 16 N -0.698 5.698 17 C 0.154 3.846 18 H 0.182 0.818 19 C 0.091 3.909 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.154 4.154 23 C 0.081 3.919 24 N -0.511 5.511 25 C 0.529 3.471 26 O -0.491 6.491 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.266 0.734 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.451 0.549 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 11.095 28.282 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.021 3.979 3 C -0.190 4.190 4 C -0.552 4.552 5 H 0.058 0.942 6 C -0.174 4.174 7 N -0.578 5.578 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.237 1.237 11 H -0.147 1.147 12 C 0.030 3.970 13 N -0.313 5.313 14 C 0.405 3.595 15 O -0.448 6.448 16 N -0.364 5.364 17 C 0.045 3.955 18 H 0.199 0.801 19 C -0.047 4.047 20 C -0.159 4.159 21 C -0.099 4.099 22 C -0.174 4.174 23 C -0.077 4.077 24 N -0.221 5.221 25 C 0.317 3.683 26 O -0.362 6.362 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.299 0.701 37 H 0.191 0.809 38 H 0.193 0.807 39 H 0.185 0.815 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.048 10.156 27.007 28.872 hybrid contribution -0.149 0.549 -0.176 0.596 sum -1.197 10.705 26.831 28.912 Atomic orbital electron populations 1.22077 0.96533 1.00085 0.99335 1.18802 0.93395 0.93023 0.92638 1.22198 1.00778 0.97094 0.98903 1.20914 1.32957 1.11373 0.89958 0.94162 1.25707 0.95240 1.01052 0.95351 1.70078 1.50461 1.37885 0.99365 0.86405 0.79367 0.80871 0.76594 1.20618 1.23671 1.14670 1.21543 0.98928 0.95712 0.80848 1.46420 1.21305 1.35214 1.28383 1.15935 0.81000 0.81679 0.80894 1.90982 1.49141 1.34976 1.69673 1.45268 1.24031 1.37667 1.29419 1.21055 0.85129 0.99042 0.90241 0.80083 1.20624 0.97976 0.91344 0.94737 1.22280 0.99694 1.00206 0.93719 1.22094 0.93238 0.97712 0.96854 1.22603 0.99615 0.94057 1.01124 1.23091 0.95091 1.00914 0.88566 1.67290 1.08498 1.22967 1.23353 1.21025 0.85279 0.78361 0.83622 1.90770 1.20394 1.56176 1.68849 0.94486 0.93877 0.93996 0.93285 0.94738 0.93494 0.92512 0.90080 0.90415 0.70140 0.80851 0.80701 0.81470 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 6.51 71.98 0.47 -5.20 16 2 C 0.02 1.10 0.57 -52.92 -0.03 1.07 16 3 C -0.13 -5.90 6.69 71.98 0.48 -5.42 16 4 C -0.51 -29.69 8.62 25.60 0.22 -29.47 16 5 H 0.04 2.55 7.99 -2.91 -0.02 2.52 16 6 C 0.02 1.46 5.32 84.65 0.45 1.91 16 7 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 8 Si 0.94 45.87 22.79 68.60 1.56 47.44 16 9 H -0.28 -13.30 7.10 99.48 0.71 -12.59 16 10 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 11 H -0.22 -9.83 4.65 99.48 0.46 -9.37 16 12 C 0.15 6.53 4.66 86.38 0.40 6.93 16 13 N -0.57 -20.63 2.16 -773.12 -1.67 -22.30 16 14 C 0.70 23.82 7.23 179.44 1.30 25.12 16 15 O -0.57 -23.51 16.09 -3.85 -0.06 -23.57 16 16 N -0.70 -15.65 6.23 -463.19 -2.88 -18.54 16 17 C 0.15 3.19 4.00 43.62 0.17 3.37 16 18 H 0.18 2.11 7.94 -2.39 -0.02 2.09 16 19 C 0.09 1.75 5.91 42.56 0.25 2.01 16 20 C -0.14 -1.52 9.73 22.36 0.22 -1.30 16 21 C -0.07 -0.59 10.18 22.47 0.23 -0.36 16 22 C -0.15 -1.57 10.11 22.36 0.23 -1.34 16 23 C 0.08 1.38 11.18 84.67 0.95 2.33 16 24 N -0.51 -12.19 9.97 -183.88 -1.83 -14.02 16 25 C 0.53 16.94 5.73 87.94 0.50 17.44 16 26 O -0.49 -18.23 16.85 -2.90 -0.05 -18.28 16 27 H 0.04 1.51 6.97 -2.39 -0.02 1.50 16 28 H 0.04 2.03 4.30 -2.39 -0.01 2.02 16 29 H 0.04 2.02 7.56 -2.39 -0.02 2.00 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.03 1.56 2.26 -2.39 -0.01 1.56 16 32 H 0.05 1.82 6.18 -2.39 -0.01 1.80 16 33 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.08 3.55 8.01 -2.39 -0.02 3.54 16 35 H 0.08 3.52 7.86 -2.39 -0.02 3.51 16 36 H 0.45 7.18 8.96 -92.71 -0.83 6.35 16 37 H 0.17 0.65 7.98 -2.91 -0.02 0.63 16 38 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -81.23 319.96 1.22 -80.01 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.02 Total: 11.41 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 5.84 Total: 17.09 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -6.09 Total: -114.10 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.11 Total: -41.85 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.56 Total: 47.44 kcal Total: -81.23 1.22 -80.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924925226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.088 kcal (2) G-P(sol) polarization free energy of solvation -81.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds